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Gene: Zfp319 (zinc finger protein 319) Rattus norvegicus

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Symbol:

Zfp319

Name:

zinc finger protein 319

RGD ID:

1306198

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF319 (zinc finger protein 319); INTERACTS WITH 17alpha-ethynylestradiol; aflatoxin B1; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC291849

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF319 (zinc finger protein 319)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF319 (zinc finger protein 319)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp319 (zinc finger protein 319)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf319b (zinc finger protein 319b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf319b (zinc finger protein 319b)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf319	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf319	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,708,881 - 9,712,860 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	9,707,983 - 9,728,711 (+)	Ensembl				GRCr8
mRatBN7.2	19	9,702,827 - 9,706,806 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,702,144 - 9,713,198 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	9,667,826 - 9,671,808 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,434,655 - 10,438,637 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,720,986 - 9,724,968 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,119,253 - 10,123,232 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,119,253 - 10,123,232 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	10,103,086 - 10,107,065 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	10,162,638 - 10,166,617 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	9,595,697 - 9,599,676 (+)	NCBI		Celera
RGSC_v3.1	19	10,169,697 - 10,171,443 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (EXP)

amphetamine (EXP)

atrazine (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

disodium selenite (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

iron dichloride (ISO)

methyl methanesulfonate (ISO)

N-ethyl-N-nitrosourea (ISO)

orphenadrine (EXP)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

sunitinib (ISO)

thiram (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

transcription cis-regulatory region binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11161788

Genomics

Comparative Map Data

Zfp319
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,708,881 - 9,712,860 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	9,707,983 - 9,728,711 (+)	Ensembl				GRCr8
mRatBN7.2	19	9,702,827 - 9,706,806 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,702,144 - 9,713,198 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	9,667,826 - 9,671,808 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,434,655 - 10,438,637 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,720,986 - 9,724,968 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,119,253 - 10,123,232 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,119,253 - 10,123,232 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	10,103,086 - 10,107,065 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	10,162,638 - 10,166,617 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	9,595,697 - 9,599,676 (+)	NCBI		Celera
RGSC_v3.1	19	10,169,697 - 10,171,443 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

ZNF319
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	57,994,676 - 58,000,672 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	57,994,673 - 58,000,672 (-)	Ensembl			hg38	GRCh38
GRCh37	16	58,028,580 - 58,034,576 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	56,586,074 - 56,591,263 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	56,586,073 - 56,591,263	NCBI
Celera	16	42,525,897 - 42,531,086 (-)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	43,895,562 - 43,900,755 (-)	NCBI		HuRef
CHM1_1	16	59,435,643 - 59,440,836 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	63,789,961 - 63,795,961 (-)	NCBI		T2T-CHM13v2.0

Zfp319
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	96,052,759 - 96,058,439 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	96,049,639 - 96,058,578 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	95,326,131 - 95,331,811 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	95,323,011 - 95,331,950 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	97,850,036 - 97,855,850 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	98,215,265 - 98,221,079 (-)	NCBI		MGSCv36	mm8
Celera	8	99,647,100 - 99,652,917 (-)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	47.12	NCBI

Znf319
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,561,801 - 15,567,417 (-)	Ensembl
ChiLan1.0	NW_004955433	15,561,801 - 15,567,417 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF319
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	67,465,739 - 67,472,449 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	73,386,612 - 73,393,324 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	38,271,321 - 38,277,306 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	57,402,775 - 57,408,189 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	57,404,624 - 57,406,372 (-)	Ensembl			panPan2	panpan1.1

ZNF319
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,549,931 - 58,556,406 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,551,659 - 58,557,037 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	55,179,448 - 55,186,214 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	59,088,382 - 59,095,149 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	59,088,357 - 59,095,149 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	55,919,773 - 55,926,540 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	56,927,290 - 56,934,057 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	57,820,559 - 57,827,330 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf319
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	49,656,542 - 49,662,040 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	9,927,055 - 9,931,905 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	9,926,867 - 9,932,477 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF319
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	19,842,585 - 19,851,288 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	19,845,190 - 19,865,842 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	17,761,912 - 17,767,354 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF319
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	43,926,105 - 43,932,069 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	43,927,948 - 43,929,696 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	32,246,686 - 32,252,717 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf319
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	28,167,741 - 28,174,604 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	28,166,141 - 28,174,623 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf319
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	2,187,457 - 2,193,229 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp319
26 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	62
Count of miRNA genes:	57
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000017971
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31969901	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24694445	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27361636	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	67	160	91	90	59	92	59	6	354	191	9	139	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017971 ⟹ ENSRNOP00000017971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	10,119,253 - 10,123,232 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095417 ⟹ ENSRNOP00000079552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	9,702,350 - 9,713,198 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115558 ⟹ ENSRNOP00000082031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	9,702,144 - 9,713,198 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121895 ⟹ ENSRNOP00000105540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	9,708,414 - 9,728,711 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000145498 ⟹ ENSRNOP00000100673

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	9,707,983 - 9,722,084 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168752 ⟹ ENSRNOP00000107887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	9,708,243 - 9,724,838 (+)	Ensembl

RefSeq Acc Id:

NM_001170478 ⟹ NP_001163949

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,708,881 - 9,712,860 (+)	NCBI
mRatBN7.2	19	9,702,827 - 9,706,806 (+)	NCBI
Rnor_6.0	19	10,119,253 - 10,123,232 (+)	NCBI
Rnor_5.0	19	10,103,086 - 10,107,065 (+)	NCBI
RGSC_v3.4	19	10,162,638 - 10,166,617 (+)	RGD
Celera	19	9,595,697 - 9,599,676 (+)	RGD

Sequence:

show sequence

GTCCGCCGGTCTCTGCAGGACCGTCGGTCTGTCCGCTCGCCCGTCCGTCCGCTCGCCCGGTCCC
GCTAACCCGAGTGCGCGCGTCGATTCGTCGGTTCCGGCTGCCACAAACCTGTCTCCCGATTCCG
CGCCGCCTGCCTCTGCTACGCGAGGCCGAGGATTGGCAGGGCGCGTAGGCCGCGCCGCGGCGGA
TGGAGCCGGAATAAAGAGGCGGCAGAGAAAGCAGCTGGTCTCCGCTTGCCCCGCGCCTGACCCC
TGGAGCAGAATCGATTACTGGGGAAGGCAGAGCCTTCTTGGCATTGCTGGGACCCTGTCTCGAA
GAGCCCCCTGTCCTGTAGGCTATCTTCTTGGCTAATGACAAGGGCTATCTGACAAGACCTCTGT
GCCTTGTGTGAGGTTCTTGTCTGTTCCTGAGATCCGGTAGCTTCTCTCTCAGGGTTAGGTTCAC
CTTAAGCGGGAAACTGAAGCCATTACTTTCCAAACCCAGTTTCATCTTCCCAAGCATGTCAGAA
AGCTGGCAGCAGCCACCGCAGACTCAGCCACAACAGCCGCAGGCACCACAGCCTCAGCACCATG
CAGAGCCCCCGCCAGCCCTGGCTGAACACACGCTGCCCCCGGGCACGGCTGAGAACCCACTGGG
CTGTGCTGTCTATGGTATACTCCTGCAACCCGACCCAGGCCTACAGCCCCCACAGCATGCACCC
CTGCAAGCAGGGGAGCCAGGCCCCAAATGTGGCGTGTGTGGCCATGATCTGGCACACCTGTCCA
GCCCACATGAGCACCAGTGCCTAGCAGGCCATGACCGCTCATTTCAGTGCACCCAGTGTCTCAA
GATATTTCATCAGGCCACCGACCTGCTGGAGCACCAGTGTGTGCAGGCGGAGCAGAAGCCTTTT
GTCTGTGGTGTTTGCAAAATGGGCTTCTCGCTGCTCACCTCACTGGCCCAACACCACAGCTCCC
ACACCGGCATGGTCAAGTGCTCCATTTGTGATAAGACCTACAAGCCAGCTGAGGCTGCTGAGCC
TGCCACCACTACTGCCCCATCGCTGCCCTCAGCACCTCCCCCCACGAATGTGGCCCCTGTGGAA
CAACCAGAAAAACCCTATAGCTGTCCCATTTGCCAGAAGCCCTTCAAGCACCTGTCGGAGCTCT
CCCGGCATGAACGGATCCACACCGGAGAGAAGCCGTACAAGTGCACTCTGTGTGACAAGAGTTT
CAGTCAGTCCTCTCACCTAGTGCACCACAAGCGCACGCACAGCTCAGAGCGGCCCTACAAGTGT
GCTGTCTGTGAGAAGACGTTCAAGCACCGCTCCCACCTGGTGCGCCACATGTACGCGCATTCCG
GTGAGCACCACCTGTTCCGCTGCAATGTGTGCGAGCTGCATTTCAAAGAGTCGTCAGAGCTGCT
GCAGCACCCGTGTACCCCCAGTGGGGAGCGGCCCTTTCGCTGCGGTGAGTGCCAGAAGGCCTTC
AAGCGGCCGTCGGACCTGAGGCAGCATGAGCGCACGCACAGTGCAGAGAGGCCCTTCAAGTGTG
ATCTGTGCCCCATGGGCTTCAAGCAGCAGTACGCACTGATGAGGCACCGGCGCACGCACAAGAC
GGAAGAGCCCTTTAAATGCGGCCTGTGTGAGAAGGGCTTCGGACAGCCCAGCCACCTGCTCTAC
CACCAGCACGTGCACACCCTGGAGACTCTCTTCAAGTGCCCGGTGTGCCAGAAGGGCTTCGACC
AGTCCGCTGAGCTGCTGCGGCACAAGTGCCTCCCAGGCTCCACAGAGCGGCCCTTCAAGTGCCC
CGTGTGTAACAAGGCCTACAAGCGGGCGTCCGCCCTGCAGAAGCACCAGCTGTCTCACTGTGCT
GCGGCCGAGAAGCCTCTGCGTTGCACCCTGTGTGAGCGCCGCTTTTTTTCCTCCTCCGAGTTCG
TGCAGCACCGCTGTGACCCCACCCGGGAGAAGCCACTCAAGTGTCCAGACTGCGAGAAGCGCTT
TAAGTACGCTTCAGACCTGCAGCGCCACCGGCGGGTGCACACGGGTGAGAAGCCCTACAAGTGT
CCCAACTGCGACAAAGCCTTCAAGCAGCGGGAGCATCTCAACAAGCACCAGGGTGTGCACGCCA
GAGAGCAGCAGTTCAAGTGTGTGTGGTGCGGCGAACGCTTTCTGGATGTGGCACTGCTACAGGA
GCACAGTGCCCAGCACAGTGCTGCCGCTGCAGCCGCGGAGGGCGCCTACCAGGTGGCAGCCTGC
TTGCCCTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001163949	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87291	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000100673.1
	ENSRNOP00000105540.1
	ENSRNOP00000107887
	ENSRNOP00000107887.1

RefSeq Acc Id:

NP_001163949 ⟸ NM_001170478

- UniProtKB:

D4AEC6 (UniProtKB/TrEMBL), A6JY13 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSESWQQPPQTQPQQPQAPQPQHHAEPPPALAEHTLPPGTAENPLGCAVYGILLQPDPGLQPPQ
HAPLQAGEPGPKCGVCGHDLAHLSSPHEHQCLAGHDRSFQCTQCLKIFHQATDLLEHQCVQAEQ
KPFVCGVCKMGFSLLTSLAQHHSSHTGMVKCSICDKTYKPAEAAEPATTTAPSLPSAPPPTNVA
PVEQPEKPYSCPICQKPFKHLSELSRHERIHTGEKPYKCTLCDKSFSQSSHLVHHKRTHSSERP
YKCAVCEKTFKHRSHLVRHMYAHSGEHHLFRCNVCELHFKESSELLQHPCTPSGERPFRCGECQ
KAFKRPSDLRQHERTHSAERPFKCDLCPMGFKQQYALMRHRRTHKTEEPFKCGLCEKGFGQPSH
LLYHQHVHTLETLFKCPVCQKGFDQSAELLRHKCLPGSTERPFKCPVCNKAYKRASALQKHQLS
HCAAAEKPLRCTLCERRFFSSSEFVQHRCDPTREKPLKCPDCEKRFKYASDLQRHRRVHTGEKP
YKCPNCDKAFKQREHLNKHQGVHAREQQFKCVWCGERFLDVALLQEHSAQHSAAAAAAEGAYQV
AACLP

hide sequence

Ensembl Acc Id:

ENSRNOP00000017971 ⟸ ENSRNOT00000017971

Ensembl Acc Id:

ENSRNOP00000082031 ⟸ ENSRNOT00000115558

Ensembl Acc Id:

ENSRNOP00000079552 ⟸ ENSRNOT00000095417

Ensembl Acc Id:

ENSRNOP00000100673 ⟸ ENSRNOT00000145498

Ensembl Acc Id:

ENSRNOP00000105540 ⟸ ENSRNOT00000121895

Ensembl Acc Id:

ENSRNOP00000107887 ⟸ ENSRNOT00000168752

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AEC6-F1-model_v2	AlphaFold	D4AEC6	1-581	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700931

Promoter ID:

EPDNEW_R11455

Type:

initiation region

Name:

Zfp319_1

Description:

zinc finger protein 319

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	10,119,240 - 10,119,300	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306198	AgrOrtholog
BioCyc Gene	G2FUF-6529	BioCyc
Ensembl Genes	ENSRNOG00000013460	Ensembl
	ENSRNOG00000062825	Ensembl
	ENSRNOG00000079756	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000121895.1	UniProtKB/TrEMBL
	ENSRNOT00000145498.1	UniProtKB/TrEMBL
	ENSRNOT00000168752	ENTREZGENE
	ENSRNOT00000168752.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:291849	UniProtKB/TrEMBL
NCBI Gene	291849	ENTREZGENE
PANTHER	KRAB AND ZINC FINGER DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 319-LIKE	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PhenoGen	Zfp319	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013460	RatGTEx
	ENSRNOG00000062825	RatGTEx
	ENSRNOG00000079756	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A6JY13	ENTREZGENE, UniProtKB/TrEMBL
	D4AEC6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zfp319	zinc finger protein 319	Zfp319_predicted	zinc finger protein 319 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zfp319_predicted	zinc finger protein 319 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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