Radil (Rap associating with DIL domain)

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Gene: Radil (Rap associating with DIL domain) Rattus norvegicus

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Symbol:

Radil

Name:

Rap associating with DIL domain

RGD ID:

1306155

Description:

Predicted to enable GTPase binding activity. Predicted to be involved in neural crest cell migration and substrate adhesion-dependent cell spreading. Predicted to be part of protein-containing complex. Predicted to be active in microtubule. Orthologous to human RADIL (Rap associating with DIL domain); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC304299; Rap GTPase interactor; Ras association and DIL domains; ras-associating and dilute domain-containing protein; RGD1306155; similar to scaffolding protein SLIPR

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	17,137,872 - 17,202,021 (+)	NCBI		GRCr8
mRatBN7.2	12	12,024,395 - 12,088,540 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	12,024,395 - 12,088,540 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	12,826,887 - 12,890,790 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	13,450,118 - 13,514,021 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	12,481,238 - 12,545,147 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	14,092,541 - 14,156,704 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	14,092,541 - 14,156,704 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	16,120,532 - 16,185,309 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	12,420,877 - 12,485,651 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	12,450,944 - 12,515,270 (+)	NCBI
Celera	12	13,807,057 - 13,871,056 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Baraitser-Winter syndrome 1 (ISO)

megacolon (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

doxorubicin (ISO)

endosulfan (EXP)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

neural crest cell migration (IBA)

signal transduction (IEA)

substrate adhesion-dependent cell spreading (IBA,ISO)

Cellular Component

microtubule (IBA,ISO)

protein-containing complex (ISO)

Molecular Function

GTPase binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17704304	PMID:23209302	PMID:26780829	PMID:30361391

Genomics

Comparative Map Data

Radil
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	17,137,872 - 17,202,021 (+)	NCBI		GRCr8
mRatBN7.2	12	12,024,395 - 12,088,540 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	12,024,395 - 12,088,540 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	12,826,887 - 12,890,790 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	13,450,118 - 13,514,021 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	12,481,238 - 12,545,147 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	14,092,541 - 14,156,704 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	14,092,541 - 14,156,704 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	16,120,532 - 16,185,309 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	12,420,877 - 12,485,651 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	12,450,944 - 12,515,270 (+)	NCBI
Celera	12	13,807,057 - 13,871,056 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

RADIL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	4,797,055 - 4,883,716 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	4,797,055 - 4,883,716 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	4,836,686 - 4,923,347 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	4,805,266 - 4,889,861 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	4,798,391 - 4,882,417 (-)	NCBI		Celera
Cytogenetic Map	7	p22.1	NCBI
HuRef	7	4,755,550 - 4,838,928 (-)	NCBI		HuRef
CHM1_1	7	4,838,485 - 4,923,073 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	4,914,262 - 5,000,912 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	4,885,095 - 4,969,690 (-)	NCBI

Radil
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	142,470,594 - 142,536,873 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	142,470,594 - 142,536,853 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	142,483,795 - 142,551,098 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	142,484,839 - 142,551,098 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	142,960,795 - 143,027,031 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	142,737,315 - 142,803,551 (-)	NCBI		MGSCv36	mm8
Celera	5	139,539,520 - 139,606,082 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	81.53	NCBI

Radil
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	10,931,901 - 10,994,178 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	10,906,944 - 10,990,369 (+)	NCBI	ChiLan1.0	ChiLan1.0

RADIL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	9,765,330 - 9,849,949 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	58,090,038 - 58,174,653 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	5,051,784 - 5,136,345 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	5,092,131 - 5,130,716 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	5,092,131 - 5,130,716 (-)	Ensembl	panpan1.1		panPan2

LOC479761
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	12,718,243 - 12,845,186 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	12,717,693 - 12,845,196 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	14,188,679 - 14,316,046 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	12,854,072 - 12,981,532 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	12,853,662 - 12,981,542 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	12,664,990 - 12,792,207 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	12,597,907 - 12,725,235 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	12,900,295 - 13,001,428 (+)	NCBI		UU_Cfam_GSD_1.0

Radil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	141,029,892 - 141,113,057 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936765	1,051,351 - 1,104,618 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936765	1,050,471 - 1,104,117 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RADIL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	3,641,112 - 3,716,141 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	3,642,294 - 3,716,139 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	4,292,918 - 4,366,769 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RADIL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	16,765,646 - 16,846,934 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	16,771,061 - 16,846,664 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666090	5,072,668 - 5,154,585 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Radil
299 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	39
Count of miRNA genes:	35
Interacting mature miRNAs:	36
Transcripts:	ENSRNOT00000033998
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	9318216	12829686	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
1600391	Edcs2	Endometrial carcinoma susceptibility QTL2	3.5	0.01	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	12	6833190	17870186	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	36247923	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat

Markers in Region

BF409203

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	12,046,254 - 12,046,454 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	14,114,406 - 14,114,605	NCBI	Rnor6.0
Rnor_5.0	12	16,142,397 - 16,142,596	UniSTS	Rnor5.0
RGSC_v3.4	12	12,442,742 - 12,442,941	UniSTS	RGSC3.4
Celera	12	13,828,922 - 13,829,121	UniSTS
RH 3.4 Map	12	162.9	UniSTS
Cytogenetic Map	12	p11	UniSTS

AU049765

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	12,064,941 - 12,065,143 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	14,133,092 - 14,133,293	NCBI	Rnor6.0
Rnor_5.0	12	16,161,601 - 16,161,802	UniSTS	Rnor5.0
RGSC_v3.4	12	12,461,946 - 12,462,147	UniSTS	RGSC3.4
Celera	12	13,847,518 - 13,847,719	UniSTS
Cytogenetic Map	12	p11	UniSTS

Papolb

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	12,044,779 - 12,045,100 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	14,112,931 - 14,113,251	NCBI	Rnor6.0
Rnor_5.0	12	16,140,922 - 16,141,242	UniSTS	Rnor5.0
RGSC_v3.4	12	12,441,267 - 12,441,587	UniSTS	RGSC3.4
Celera	12	13,827,447 - 13,827,767	UniSTS
Cytogenetic Map	12	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	66	65	34	25	34	6	193	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV116605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033998 ⟹ ENSRNOP00000033795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	12,024,395 - 12,088,540 (+)	Ensembl
Rnor_6.0 Ensembl	12	14,092,541 - 14,156,704 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095294 ⟹ ENSRNOP00000083450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	12,029,981 - 12,088,540 (+)	Ensembl

RefSeq Acc Id:

NM_001037218 ⟹ NP_001032295

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	17,137,872 - 17,202,021 (+)	NCBI
mRatBN7.2	12	12,024,395 - 12,088,540 (+)	NCBI
Rnor_6.0	12	14,092,541 - 14,156,704 (+)	NCBI
Rnor_5.0	12	16,120,532 - 16,185,309 (+)	NCBI
RGSC_v3.4	12	12,420,877 - 12,485,651 (+)	RGD
Celera	12	13,807,057 - 13,871,056 (+)	RGD

Sequence:

show sequence

GCGCGGCCGGCAGGAGGCGCCTGGAGCCGGGCGCTAGCTCGGCTAACGGCGGGCGTGGGAGCCG
CGCGCGGGGGACGCCGCTGACGGGCTGCGCTGAGGCTCCAGCCTTCCCCCAGCCACTGGTTGAA
AGCCTCAGTGGTTATTTATGAGGACGCACTCACCATGTTTTATGGGACTCAGTTCATCATGTCT
CCTCCCACCAAGAATAAACTGAAGCGACAGAGCCAGCTACTATCTTCTATGCTGTCCCGGACAC
TGAGCTACAAGTATCGTGACCTAGACTCCACCTTCTGCAGCCTAGGTGCCAGTGATGACCCCTC
GGAGCTCTCCACGCAGCTCTCAGCCCCTGGGGTCCTGAAGGTGTTTGGGGACAGTGTCTGTACA
GGCACCCACTATAAGAGCGTCCTGGCCACTGGCGCTTCCAGCGCCCAGGAGCTGGTGAAAGAGG
CACTGGAGCGCTATGCCCTGGATCCCGAGTGTGCCAGCCAGTATGTGCTATGTGATGTTGTGGG
CCAGGCTGGGGACTCTGGGCAGCGGTGGCAGGCCCAGTGCTTCCGAGTGTTTGGGGACAATGAG
AAGCCCCTCTTGATTCAGGAGTTATGGAAGCCCCGAGAAGGCTTGTCCCGGAGGTTTGAGCTAA
GGAAGAAGTCAGATGTGGAAGAGCTGGCGGCGAGGGATGTGGATACCACCACAGCAGGGATAAA
CGCCCAAGCTCGGAGGCTACAGCGTATCCGTGCCAAAGGAACCCCAGCCCTCACCTCTGAGACT
GCCCAAAGCTCCCCACCAACCGGGCTGCGCCGTACAGTCAGCGAGACCAGCCTAAGCCCAACAC
CAACGCTACCTGAGGCTGCCCAGAGGCCTGAGGAGCCCCTCCCTGACAGCATGCGTTACTCACT
GTACCAGTGCCCGCACCTGCTGCTGTTGCAGGGCTACAACCAGCAGCACGACAGCCTGGTGTAC
GTGCTCAGCCGGGAGCGGCACACAGTGGGCCAGCGCACGCCCTCCAGCAAACCCAGCATCAGCT
TGTCTGCCCCAGACATCCTGCCTCTGCACTGCACCATTCGCCGCCACCAGTCCCCAGATGGTGG
CCCGGCGGGGACCAGGCTAGTGCTGGAGCCCATCGCAGGGGCACCGGTGTCAGTCAACTTCTCA
GAAGTGGGAAGGAACCCCGTGGTGCTACAACATGGCGACCTGCTCTCCCTGGGTCTCTACTACC
TGCTGCTGTTCAAGGACCCAGGGCAGGCGCAGCCACTGCCTGCCTGTGCCCTCGCCCGTCTTGG
GGCAGCACCCCAGAGCTGTAGAATGTGTGGTGCGGCGCTCAAAGCCCGCGGGCCGGCTTCCTTG
CCTGCTGCTGTGGTGCGGCGGCGGTCACTGTTCCTGGAGTTTGAGCCCGACGTGGAGGACACAC
TGCTGCAGAGGATCATGACACTGATTGAGCCTGGAGGGGATGACCACAAGCTGACACCCGCCTT
CCTCCTCTGCCTCTGCATCCAGCACTCTGCCACTCACTTCCAGCCGGGTACCTTCAGGCATCTC
CTGCTCAAGATCGCCAAAAGGATCCGAGACACTGTCTGGGAGAAGACCAAAGAACTAGCAGAAA
AGCAGGCGCAACTGCAGGAACCCATCTCCTGGGCCAGCTTCCCCATGGCCGACCTGGTTCCTGA
CCTGCAGCACATTCTCTTTTGGATGTCAAACTGCATCGAACTCCTGTACTTCATCCAACAGAAG
TCGCCACTGTACGTGCAGAGCATGGAGGAGGAGCTGGATGTCACAGGCTCCAAGGAGTCGCTGT
TCTCCTGCACGCTGACAGCCAGTGAGGAGGCCATGGCGGCCCTGGAGGAGGTGGTGCTGTACGC
TTTCCAGCAGTGTGTGTATTACCTCTCCAAGTGCCTGTATGTCTGCCTCCCGGCCCTCTTGGAA
TGCCCCCCATTTCAGACAGAGCGCAGGGAGAGCTGGCGCTCGGGCCCCGCTCTGCCTGAAGAGC
TTCGGCGCGTGGTGTCGGTGTTCCAGGCCACCATGGACCTCCTGCAGCAGCTGCAGATGCATCC
TGAGGTGGCCTCTCAGATGCTCGCTTACCTCTTCTTCTTCTCTGGTACACTGCTCCTCAATCAG
GTGCTGGACAAGGGGCCCTCCCTGAGCTGCTTCCACTGGCCCAGGGGTGTCCAGGTGTGTGCCC
GCCTGCAGCAGTTTCTGGAGTGGGCCCGCAGCGCTGGCCTCGGAGCACCTGCCGAGCGCTTCTT
TCGGAAGCTTTCCTGCACCCTGCATCTGCTGGCCACTCCCCGTGCTCAGCTTGTCCAGATGAGC
TGGGCCACCCTACGAGCCACCTTCCCTGCCCTGAACCCTGCTCAGCTGCACCGGCTGCTGACTC
AGTACCAACTGGCCTCTGCCATGGGCCCTGTGAGCGCTTGGGATCCAGGAGCCCAAGAGAGCCC
TGAGGCCTTCCAGACAGAGGACATCCTGGAGTCCTATGAGAACCCGCCACCCATCGTTCTGCCG
AGCCAGGGCTTCCAGGTGGACCTGGAGGCCGACTGCCCGGAGGACAGCATCTACCAGCACCTGC
TCTACATCCGCCACTTCCTGTGGGGACTGCGGGGCCAAGCAAGCCCTGAGAGTGGGCCTGCCCA
GCCTGACAGCATCGAGGGCCTGTACCACACAATTCCTGAGGGGCATCTGGAAGGCCATGGCTGC
CCCTTGACTAATAGAGAACAAGGCAGAGGAGCTGTGGAAACTGCTCCTGGCCATTCTCTTCCTG
TGCCTGGAGCTCCCCGGGCACAGGGTCCCCCTGGAAGACAGCCTCCCCGAGGGGACCGCAGGGG
CTCCCAGGCTGGCTCTCTGCACACTGACTCCTCCTGCCTGCTCACTCCTCCCAGCACACCACTG
GGCCTGGAGCCTGGAGGCCCCACCTGGCCAGAGCCCAGCGGCCTCTGTGGAAAAGCGCTCCTCG
AAGGGCAGAGGAATGGACCAGGTGGTCTTCCTGGTGCAGTTCTAGAAGGAGACGCGGTTCAGGC
TGCGGCTGAGCCTCCTGCCGAGGCCTCCAGCCCCAGCTCCAGCACAGAGGACTTCTGCTACGTG
TTCATGGTGGAGCTGGAGCGAGGCCCCTCGGGGCTGGGGATGGGCCTGATCGATGGCATGCACA
CACCTCTGGAGGCCCCGGGACTCTACATACAGACCTTGCTTCCTGGGAGCCCCGCGGCATCTGA
TGGACGGCTGTCCCTGGGAGACCAAATCCTGGAGGTGAACGGCAGCAGCCTGATGGGTGTCAGC
TACATGAGGGCAGTGGATCTCATCCGACATGGAGGCAAGAAGATGCGATTTCTGGTTGCCAAGT
CTGACATGGAAACGGCCAAGAAAATCCGCTTCCGCAAACCCCCTTCCTAATAGACCAATGGACC
CTTGCCCCCACCACCTGCTTCCTGTATCCCCTCCAGGTGCCTCCAACAGCCACCCACAGCACCC
CTCGCCCTGCCCCTCCCTCACTCCCCAGTCCAGCCAGTCCTGAGTTGTAAAGTTGACTGCGTCC
CTGTGTTGTGGCCTCACGTTGAGGACACCTGTTGATAGTGTGCATCTTAGTGTATATTTATTTA
TATGACAGATGACACTAAGTTGTGACATTTCCTACAGAGATTTTATGTTTAAAGGCTTTAATGG
AGAATTTAGATTCAATAAACTATCTTTCGTATTCTTATA

hide sequence

RefSeq Acc Id:

XM_017598319 ⟹ XP_017453808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	17,143,298 - 17,202,021 (+)	NCBI
mRatBN7.2	12	12,029,796 - 12,088,540 (+)	NCBI
Rnor_6.0	12	14,097,942 - 14,156,704 (+)	NCBI

Sequence:

show sequence

ATGTGGTGGGTGGAATGCACACATTCCAAGGATGCTTCCACCAGCCTTGGAGGCACCCTTTGTG
TTGTTCCTCCTGGCCTAGTGGACGAGCCCAGCTTCAGCCCTAGGGAAATGTCTCTTCTGATGGG
ACAAACCTCCTCTACCAGGGATCTCTTCCAGTCAAGATCAGTTTCCTCTGCCAAGTCATGGGGA
GCAGCATTTTCTTGGGGCTCCAGCCTTCCCCCAGCCACTGGTTGAAAGCCTCAGTGGTTATTTA
TGAGGACGCACTCACCATGTTTTATGGGACTCAGTTCATCATGTCTCCTCCCACCAAGAATAAA
CTGAAGCGACAGAGCCAGCTACTATCTTCTATGCTGTCCCGGACACTGAGCTACAAGTATCGTG
ACCTAGACTCCACCTTCTGCAGCCTAGGTGCCAGTGATGACCCCTCGGAGCTCTCCACGCAGCT
CTCAGCCCCTGGGGTCCTGAAGGTGTTTGGGGACAGTGTCTGTACAGGCACCCACTATAAGAGC
GTCCTGGCCACTGGCGCTTCCAGCGCCCAGGAGCTGGTGAAAGAGGCACTGGAGCGCTATGCCC
TGGATCCCGAGTGTGCCAGCCAGTATGTGCTATGTGATGTTGTGGGCCAGGCTGGGGACTCTGG
GCAGCGGTGGCAGGCCCAGTGCTTCCGAGTGTTTGGGGACAATGAGAAGCCCCTCTTGATTCAG
GAGTTATGGAAGCCCCGAGAAGGCTTGTCCCGGAGGTTTGAGCTAAGGAAGAAGTCAGATGTGG
AAGAGCTGGCGGCGAGGGATGTGGATACCACCACAGCAGGGATAAACGCCCAAGCTCGGAGGCT
ACAGCGTATCCGTGCCAAAGGAACCCCAGCCCTCACCTCTGAGACTGCCCAAAGCTCCCCACCA
ACCGGGCTGCGCCGTACAGTCAGCGAGACCAGCCTAAGCCCAACACCAACGCTACCTGAGGCTG
CCCAGAGGCCTGAGGAGCCCCTCCCTGACAGCATGCGTTACTCACTGTACCAGTGCCCGCACCT
GCTGCTGTTGCAGGGCTACAACCAGCAGCACGACAGCCTGGTGTACGTGCTCAGCCGGGAGCGG
CACACAGTGGGCCAGCGCACGCCCTCCAGCAAACCCAGCATCAGCTTGTCTGCCCCAGACATCC
TGCCTCTGCACTGCACCATTCGCCGCCACCAGTCCCCAGATGGTGGCCCGGCGGGGACCAGGCT
AGTGCTGGAGCCCATCGCAGGGGCACCGGTGTCAGTCAACTTCTCAGAAGTGGGAAGGAACCCC
GTGGTGCTACAACATGGCGACCTGCTCTCCCTGGGTCTCTACTACCTGCTGCTGTTCAAGGACC
CAGGGCAGGCGCAGCCACTGCCTGCCTGTGCCCTCGCCCGTCTTGGGGCAGCACCCCAGAGCTG
TAGAATGTGTGGTGCGGCGCTCAAAGCCCGCGGGCCGGCTTCCTTGCCTGCTGCTGTGGTGCGG
CGGCGGTCACTGTTCCTGGAGTTTGAGCCCGACGTGGAGGACACACTGCTGCAGAGGATCATGA
CACTGATTGAGCCTGGAGGGGATGACCACAAGCTGACACCCGCCTTCCTCCTCTGCCTCTGCAT
CCAGCACTCTGCCACTCACTTCCAGCCGGGTACCTTCAGGCATCTCCTGCTCAAGATCGCCAAA
AGGATCCGAGACACTGTCTGGGAGAAGACCAAAGAACTAGCAGAAAAGCAGGCGCAACTGCAGG
AACCCATCTCCTGGGCCAGCTTCCCCATGGCCGACCTGGTTCCTGACCTGCAGCACATTCTCTT
TTGGATGTCAAACTGCATCGAACTCCTGTACTTCATCCAACAGAAGTCGCCACTGTACGTGCAG
AGCATGGAGGAGGAGCTGGATGTCACAGGCTCCAAGGAGTCGCTGTTCTCCTGCACGCTGACAG
CCAGTGAGGAGGCCATGGCGGCCCTGGAGGAGGTGGTGCTGTACGCTTTCCAGCAGTGTGTGTA
TTACCTCTCCAAGTGCCTGTATGTCTGCCTCCCGGCCCTCTTGGAATGCCCCCCATTTCAGACA
GAGCGCAGGGAGAGCTGGCGCTCGGGCCCCGCTCTGCCTGAAGAGCTTCGGCGCGTGGTGTCGG
TGTTCCAGGCCACCATGGACCTCCTGCAGCAGCTGCAGATGCATCCTGAGGTGGCCTCTCAGAT
GCTCGCTTACCTCTTCTTCTTCTCTGGTACACTGCTCCTCAATCAGGTGCTGGACAAGGGGCCC
TCCCTGAGCTGCTTCCACTGGCCCAGGGGTGTCCAGGTGTGTGCCCGCCTGCAGCAGTTTCTGG
AGTGGGCCCGCAGCGCTGGCCTCGGAGCACCTGCCGAGCGCTTCTTTCGGAAGCTTTCCTGCAC
CCTGCATCTGCTGGCCACTCCCCGTGCTCAGCTTGTCCAGATGAGCTGGGCCACCCTACGAGCC
ACCTTCCCTGCCCTGAACCCTGCTCAGCTGCACCGGCTGCTGACTCAGTACCAACTGGCCTCTG
CCATGGGCCCTGTGAGCGCTTGGGATCCAGGAGCCCAAGAGAGCCCTGAGGCCTTCCAGACAGA
GGACATCCTGGAGTCCTATGAGAACCCGCCACCCATCGTTCTGCCGAGCCAGGGCTTCCAGGTG
GACCTGGAGGCCGACTGCCCGGAGGACAGCATCTACCAGCACCTGCTCTACATCCGCCACTTCC
TGTGGGGACTGCGGGGCCAAGCAAGCCCTGAGAGTGGGCCTGCCCAGCCTGACAGCATCGAGGG
CCTGTACCACACAATTCCTGAGGGGCATCTGGAAGGCCATGGCTGCCCCTTGACTAATAGAGAA
CAAGGCAGAGGAGCTGTGGAAACTGCTCCTGGCCATTCTCTTCCTGTGCCTGGAGCTCCCCGGG
CACAGGGTCCCCCTGGAAGACAGCCTCCCCGAGGGGACCGCAGGGGCTCCCAGGCTGGCTCTCT
GCACACTGACTCCTCCTGCCTGCTCACTCCTCCCAGCACACCACTGGGCCTGGAGCCTGGAGGC
CCCACCTGGCCAGAGCCCAGCGGCCTCTGTGGAAAAGCGCTCCTCGAAGGGCAGAGGAATGGAC
CAGGTGGTCTTCCTGGTGCAGTTCTAGAAGGAGACGCGGTTCAGGCTGCGGCTGAGCCTCCTGC
CGAGGCCTCCAGCCCCAGCTCCAGCACAGAGGACTTCTGCTACGTGTTCATGGTGGAGCTGGAG
CGAGGCCCCTCGGGGCTGGGGATGGGCCTGATCGATGGCATGCACACACCTCTGGAGGCCCCGG
GACTCTACATACAGACCTTGCTTCCTGGGAGCCCCGCGGCATCTGATGGACGGCTGTCCCTGGG
AGACCAAATCCTGGAGGTGAACGGCAGCAGCCTGATGGGTGTCAGCTACATGAGGGCAGTGGAT
CTCATCCGACATGGAGGCAAGAAGATGCGATTTCTGGTTGCCAAGTCTGACATGGAAACGGCCA
AGAAAATCCGCTTCCGCAAACCCCCTTCCTAATAGACCAATGGACCCTTGCCCCCACCACCTGC
TTCCTGTATCCCCTCCAGGTGCCTCCAACAGCCACCCACAGCACCCCTCGCCCTGCCCCTCCCT
CACTCCCCAGTCCAGCCAGTCCTGAGTTGTAAAGTTGACTGCGTCCCTGTGTTGTGGCCTCACG
TTGAGGACACCTGTTGATAGTGTGCATCTTAGTGTATATTTATTTATATGACAGATGACACTAA
GTTGTGACATTTCCTACAGAGATTTTATGTTTAAAGGCTTTAATGGAGAATTTAGATTCAATAA
ACTATCTTTCGTATTCTTATA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001032295	(Get FASTA)	NCBI Sequence Viewer
	XP_017453808	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89708	(Get FASTA)	NCBI Sequence Viewer
	EDL89709	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033795.5
	ENSRNOP00000083450.1

RefSeq Acc Id:

NP_001032295 ⟸ NM_001037218

- UniProtKB:

D4A1Z8 (UniProtKB/TrEMBL), A6K1Q1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFYGTQFIMSPPTKNKLKRQSQLLSSMLSRTLSYKYRDLDSTFCSLGASDDPSELSTQLSAPGV
LKVFGDSVCTGTHYKSVLATGASSAQELVKEALERYALDPECASQYVLCDVVGQAGDSGQRWQA
QCFRVFGDNEKPLLIQELWKPREGLSRRFELRKKSDVEELAARDVDTTTAGINAQARRLQRIRA
KGTPALTSETAQSSPPTGLRRTVSETSLSPTPTLPEAAQRPEEPLPDSMRYSLYQCPHLLLLQG
YNQQHDSLVYVLSRERHTVGQRTPSSKPSISLSAPDILPLHCTIRRHQSPDGGPAGTRLVLEPI
AGAPVSVNFSEVGRNPVVLQHGDLLSLGLYYLLLFKDPGQAQPLPACALARLGAAPQSCRMCGA
ALKARGPASLPAAVVRRRSLFLEFEPDVEDTLLQRIMTLIEPGGDDHKLTPAFLLCLCIQHSAT
HFQPGTFRHLLLKIAKRIRDTVWEKTKELAEKQAQLQEPISWASFPMADLVPDLQHILFWMSNC
IELLYFIQQKSPLYVQSMEEELDVTGSKESLFSCTLTASEEAMAALEEVVLYAFQQCVYYLSKC
LYVCLPALLECPPFQTERRESWRSGPALPEELRRVVSVFQATMDLLQQLQMHPEVASQMLAYLF
FFSGTLLLNQVLDKGPSLSCFHWPRGVQVCARLQQFLEWARSAGLGAPAERFFRKLSCTLHLLA
TPRAQLVQMSWATLRATFPALNPAQLHRLLTQYQLASAMGPVSAWDPGAQESPEAFQTEDILES
YENPPPIVLPSQGFQVDLEADCPEDSIYQHLLYIRHFLWGLRGQASPESGPAQPDSIEGLYHTI
PEGHLEGHGCPLTNREQGRGAVETAPGHSLPVPGAPRAQGPPGRQPPRGDRRGSQAGSLHTDSS
CLLTPPSTPLGLEPGGPTWPEPSGLCGKALLEGQRNGPGGLPGAVLEGDAVQAAAEPPAEASSP
SSSTEDFCYVFMVELERGPSGLGMGLIDGMHTPLEAPGLYIQTLLPGSPAASDGRLSLGDQILE
VNGSSLMGVSYMRAVDLIRHGGKKMRFLVAKSDMETAKKIRFRKPPS

hide sequence

RefSeq Acc Id:	XP_017453808 ⟸ XM_017598319
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWZ1 (UniProtKB/TrEMBL), A6K1Q0 (UniProtKB/TrEMBL), D4A1Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSSIFLGLQPSPSHWLKASVVIYEDALTMFYGTQFIMSPPTKNKLKRQSQLLSSMLSRTLSYK YRDLDSTFCSLGASDDPSELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGASSAQELVKEALER YALDPECASQYVLCDVVGQAGDSGQRWQAQCFRVFGDNEKPLLIQELWKPREGLSRRFELRKKS DVEELAARDVDTTTAGINAQARRLQRIRAKGTPALTSETAQSSPPTGLRRTVSETSLSPTPTLP EAAQRPEEPLPDSMRYSLYQCPHLLLLQGYNQQHDSLVYVLSRERHTVGQRTPSSKPSISLSAP DILPLHCTIRRHQSPDGGPAGTRLVLEPIAGAPVSVNFSEVGRNPVVLQHGDLLSLGLYYLLLF KDPGQAQPLPACALARLGAAPQSCRMCGAALKARGPASLPAAVVRRRSLFLEFEPDVEDTLLQR IMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFRHLLLKIAKRIRDTVWEKTKELAEKQAQ LQEPISWASFPMADLVPDLQHILFWMSNCIELLYFIQQKSPLYVQSMEEELDVTGSKESLFSCT LTASEEAMAALEEVVLYAFQQCVYYLSKCLYVCLPALLECPPFQTERRESWRSGPALPEELRRV VSVFQATMDLLQQLQMHPEVASQMLAYLFFFSGTLLLNQVLDKGPSLSCFHWPRGVQVCARLQQ FLEWARSAGLGAPAERFFRKLSCTLHLLATPRAQLVQMSWATLRATFPALNPAQLHRLLTQYQL ASAMGPVSAWDPGAQESPEAFQTEDILESYENPPPIVLPSQGFQVDLEADCPEDSIYQHLLYIR HFLWGLRGQASPESGPAQPDSIEGLYHTIPEGHLEGHGCPLTNREQGRGAVETAPGHSLPVPGA PRAQGPPGRQPPRGDRRGSQAGSLHTDSSCLLTPPSTPLGLEPGGPTWPEPSGLCGKALLEGQR NGPGGLPGAVLEGDAVQAAAEPPAEASSPSSSTEDFCYVFMVELERGPSGLGMGLIDGMHTPLE APGLYIQTLLPGSPAASDGRLSLGDQILEVNGSSLMGVSYMRAVDLIRHGGKKMRFLVAKSDME TAKKIRFRKPPS hide sequence

Ensembl Acc Id:

ENSRNOP00000033795 ⟸ ENSRNOT00000033998

Ensembl Acc Id:

ENSRNOP00000083450 ⟸ ENSRNOT00000095294

Protein Domains

Dilute PDZ Ras-associating

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A1Z8-F1-model_v2	AlphaFold	D4A1Z8	1-1071	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698449

Promoter ID:

EPDNEW_R8974

Type:

initiation region

Name:

Radil_1

Description:

Rap associating with DIL domain

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	14,092,520 - 14,092,580	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306155	AgrOrtholog
BioCyc Gene	G2FUF-19970	BioCyc
Ensembl Genes	ENSRNOG00000024456	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033998.5	UniProtKB/TrEMBL
	ENSRNOT00000095294.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	2.60.200.20	UniProtKB/TrEMBL
InterPro	CBD_Rasip1/Radil	UniProtKB/TrEMBL
	Dilute	UniProtKB/TrEMBL
	FHA_dom	UniProtKB/TrEMBL
	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	Ras-assoc	UniProtKB/TrEMBL
	SMAD_FHA_domain	UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
	Vascular_dev_regulator	UniProtKB/TrEMBL
KEGG Report	rno:304299	UniProtKB/TrEMBL
NCBI Gene	304299	ENTREZGENE
PANTHER	DILUTE DOMAIN-CONTAINING PROTEIN YPR089W	UniProtKB/TrEMBL
	RAS-ASSOCIATING AND DILUTE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	DIL	UniProtKB/TrEMBL
	FHA	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PF00788	UniProtKB/TrEMBL
PhenoGen	Radil	PhenoGen
PROSITE	DILUTE	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PS50200	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000024456	RatGTEx
SMART	DIL	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	SM00314	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
	SMAD_FHA	UniProtKB/TrEMBL
	SSF54236	UniProtKB/TrEMBL
UniProt	A0A8I5ZWZ1	ENTREZGENE, UniProtKB/TrEMBL
	A6K1Q0	ENTREZGENE, UniProtKB/TrEMBL
	A6K1Q1	ENTREZGENE, UniProtKB/TrEMBL
	D4A1Z8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	Radil	Rap associating with DIL domain	Radil	Ras association and DIL domains	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Radil	Ras association and DIL domains	Radil	Rap GTPase interactor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Radil	Rap GTPase interactor	RGD1306155_predicted	similar to scaffolding protein SLIPR (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1306155_predicted	similar to scaffolding protein SLIPR (predicted)	LOC304299_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC304299_predicted	similar to scaffolding protein SLIPR (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar