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Gene: Ninl (ninein-like) Rattus norvegicus

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Symbol:

Ninl

Name:

ninein-like

RGD ID:

1306152

Description:

Predicted to enable calcium ion binding activity. Predicted to be involved in microtubule anchoring at centrosome. Predicted to be located in cytoplasm and microtubule. Predicted to be active in centrosome. Orthologous to human NINL (ninein like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; cocaine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC311529; Nlp; RGD1306152; similar to KIAA0980 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NINL (ninein like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Ninl (ninein-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ninl (ninein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NINL (ninein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NINL (ninein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ninl (ninein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NINL (ninein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NINL (ninein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ninl (ninein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ninl (ninein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ninl (ninein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NINL (ninein like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ninl (ninein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ninl (ninein-like)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Bsg25D	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Bsg25D	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T04F8.6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	T04F8.6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ninl	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	160,208,757 - 160,275,077 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	160,196,883 - 160,275,108 (-)	Ensembl				GRCr8
mRatBN7.2	3	139,748,353 - 139,814,683 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	139,748,355 - 139,814,622 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	146,719,210 - 146,785,450 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	146,719,911 - 146,764,015 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	153,080,068 - 153,143,870 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	141,560,515 - 141,625,609 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	138,509,138 - 138,575,455 (-)	NCBI		Celera
RGSC_v3.1	3	141,466,087 - 141,532,767 (-)	NCBI
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-phenylprop-2-enal (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

clobetasol (ISO)

clothianidin (ISO)

cobalt dichloride (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

DDE (ISO)

dexamethasone (ISO)

endosulfan (EXP)

Enterolactone (ISO)

fulvestrant (ISO)

GSK-J4 (ISO)

indometacin (ISO)

Lasiocarpine (ISO)

lead(0) (ISO)

leflunomide (ISO)

maneb (ISO)

methapyrilene (ISO)

methotrexate (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

resveratrol (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

microtubule anchoring at centrosome (IBA)

Cellular Component

centrosome (IBA,IEA,ISO)

cytosol (IEA,ISO)

microtubule (IEA)

microtubule organizing center (IEA)

Molecular Function

calcium ion binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Genomics

Comparative Map Data

Ninl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	160,208,757 - 160,275,077 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	160,196,883 - 160,275,108 (-)	Ensembl				GRCr8
mRatBN7.2	3	139,748,353 - 139,814,683 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	139,748,355 - 139,814,622 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	146,719,210 - 146,785,450 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	146,719,911 - 146,764,015 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	153,080,068 - 153,143,870 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	141,560,515 - 141,625,609 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	138,509,138 - 138,575,455 (-)	NCBI		Celera
RGSC_v3.1	3	141,466,087 - 141,532,767 (-)	NCBI
Cytogenetic Map	3	q41	NCBI

NINL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	25,452,697 - 25,585,531 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	25,451,594 - 25,585,586 (-)	Ensembl			hg38	GRCh38
GRCh37	20	25,433,333 - 25,566,167 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	25,381,337 - 25,514,153 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	20	25,507,056 - 25,640,061 (-)	NCBI		Celera
Cytogenetic Map	20	p11.21	NCBI
HuRef	20	25,391,035 - 25,523,990 (-)	NCBI		HuRef
CHM1_1	20	25,433,742 - 25,566,581 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	25,517,773 - 25,650,553 (-)	NCBI		T2T-CHM13v2.0

Ninl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	150,776,439 - 150,851,330 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	150,776,439 - 150,881,302 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	150,934,519 - 151,009,411 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	150,934,519 - 151,039,382 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	150,760,255 - 150,835,134 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	150,626,149 - 150,700,773 (-)	NCBI		MGSCv36	mm8
Celera	2	152,167,635 - 152,242,739 (-)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	74.76	NCBI

Ninl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	31,368,773 - 31,441,009 (-)	Ensembl
ChiLan1.0	NW_004955415	31,370,477 - 31,440,983 (-)	NCBI	ChiLan1.0	ChiLan1.0

NINL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	26,328,914 - 26,467,805 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	26,325,748 - 26,464,633 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	25,398,044 - 25,536,928 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	25,801,993 - 25,930,130 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	25,801,650 - 25,941,057 (-)	Ensembl			panPan2	panpan1.1

NINL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	1,597,546 - 1,734,720 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	1,598,135 - 1,733,031 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	1,627,194 - 1,765,278 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	1,838,081 - 1,976,215 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	1,838,017 - 1,976,139 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	1,678,928 - 1,816,975 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	1,803,372 - 1,941,414 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	1,770,933 - 1,909,061 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ninl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	146,840,589 - 146,997,885 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	261,041 - 418,345 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	261,048 - 417,558 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NINL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	31,072,738 - 31,217,342 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	31,082,958 - 31,195,041 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	35,161,237 - 35,273,976 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NINL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023667467	24,416 - 31,894 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ninl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624939	65,000 - 170,458 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624939	65,000 - 171,107 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ninl
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	130,634,231 - 130,700,291 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ninl
786 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	254
Count of miRNA genes:	99
Interacting mature miRNAs:	104
Transcripts:	ENSRNOT00000038447, ENSRNOT00000064806, ENSRNOT00000068689
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	141508991	166376254	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

D3Mco9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	160,222,814 - 160,223,052 (+)	Marker Load Pipeline
mRatBN7.2	3	139,762,410 - 139,762,648 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	146,733,267 - 146,733,502	NCBI	Rnor6.0
Rnor_5.0	3	153,094,125 - 153,094,360	UniSTS	Rnor5.0
RGSC_v3.4	3	141,573,872 - 141,574,107	UniSTS	RGSC3.4
RGSC_v3.4	3	141,573,871 - 141,574,107	RGD	RGSC3.4
Celera	3	138,523,196 - 138,523,431	UniSTS
RGSC_v3.1	3	141,479,444 - 141,479,680	RGD
Cytogenetic Map	3	q41	UniSTS

BF397870

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	139,748,650 - 139,748,802 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	146,719,508 - 146,719,659	NCBI	Rnor6.0
Rnor_5.0	3	153,080,366 - 153,080,517	UniSTS	Rnor5.0
RGSC_v3.4	3	141,560,112 - 141,560,263	UniSTS	RGSC3.4
Celera	3	138,509,436 - 138,509,587	UniSTS
RH 3.4 Map	3	1197.32	UniSTS
Cytogenetic Map	3	q41	UniSTS

BF404875

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	139,775,078 - 139,775,283 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	146,745,933 - 146,746,137	NCBI	Rnor6.0
Rnor_5.0	3	153,106,791 - 153,106,995	UniSTS	Rnor5.0
RGSC_v3.4	3	141,586,538 - 141,586,742	UniSTS	RGSC3.4
Celera	3	138,535,862 - 138,536,066	UniSTS
RH 3.4 Map	3	1197.31	UniSTS
Cytogenetic Map	3	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	83	59	6	347	183	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068689 ⟹ ENSRNOP00000061689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,208,800 - 160,275,094 (-)	Ensembl
mRatBN7.2 Ensembl	3	139,748,355 - 139,814,622 (-)	Ensembl
Rnor_6.0 Ensembl	3	146,719,911 - 146,764,015 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113209 ⟹ ENSRNOP00000087279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,208,457 - 160,275,094 (-)	Ensembl
mRatBN7.2 Ensembl	3	139,748,355 - 139,814,622 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116558 ⟹ ENSRNOP00000088771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,208,457 - 160,275,094 (-)	Ensembl
mRatBN7.2 Ensembl	3	139,748,355 - 139,814,622 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163129 ⟹ ENSRNOP00000100824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,208,847 - 160,275,084 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164358 ⟹ ENSRNOP00000098661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,196,883 - 160,275,108 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166583 ⟹ ENSRNOP00000101786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,208,457 - 160,267,937 (-)	Ensembl

RefSeq Acc Id:

XM_008762394 ⟹ XP_008760616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	160,208,757 - 160,275,077 (-)	NCBI
mRatBN7.2	3	139,748,355 - 139,814,682 (-)	NCBI
Rnor_6.0	3	146,719,210 - 146,785,450 (-)	NCBI

Sequence:

show sequence

GAGGGGGCGGCGCCCGGAGGCCTTGGAAGCCCTGGGGAGCGCGGCCGCCAGACACAAAGAGCGG
CCGAGGTACGCGCGCTGCGGTATCCTACCCGGATCGCTTTGCACCGGGCTGCCGGAGCCCGCAT
CCTGGACTCAGCGTTCGTAGAGCGGAGCCTCCCACTCCCCAGCCTGCTATGGGATGGACAACGA
AGAAGAGAACCACTATGTGTCACGGCTCAGGGATGTCTACAGCAGCTGTGACACCACAGGGACC
GGGTTTCTGGATCAGGAAGAGCTGACCCAGCTATGTACTAAGCTTGGCCTGGAAGAGCAGCTGC
CGGCACTCCTTCACATTCTTCTTGGAGATGGCCGCTTGGCCAGGGTTAACTTTGAGGAATTCAA
GGAAGGCTTTGTGGCTGTGCTGTCATCTGCTACTGGCGTAGAACCCTCTGATGAGGAAGGTAGT
TCTTCAGAGTCAGCTACTTCCTGTGCTGTCCCTCCAAAGTACATGAGTGGCTCTAAGTGGTATG
GCCGTCGGAGCCTCCCTGAGCTCGGTGATTCTGCCACCACAACCAAATGTGGATCAGAACAGCA
GGCCAAGGGCAGTGTGAAGCCTCCGTTGAGACGTTCTGCATCTCTGGAAAGTGTGGAGAGCCTC
AAGTCAGATGAAGATGCCGAGAGCCCTAAAGAACCTCAGAATGAATTATTTGAAGCACAAGGCC
AGCTGCGATCCTGGGGTTGTGAGGTCTTCGGGACACCCCGAAAATCCTGTAGCCCCTCCTTCAA
CACTCCTGAGAACCAGGTCCAGGGCATCTGGCATGAGCTGGGGGTTGGAAGCAGTGGTCACCTG
AATGAGCAGGAGCTGGCTGTGGTCTGCCGAAGCATCGGGCTCCACGGTCTTGAGAAACAGGAAC
TTGAAGAACTGTTCAGCAAACTGGACCGGGATGGAGATGGCAGAGTGAGTCTTGCAGAGTTTCA
GCTTGGCCTGTTTGGTCATGAGCCTCCTTCGCTTCCAGCGTCTTCCAGTCTGATCAAGCCAAAT
GGGCCTTGGTCTCACTATCAGGAGGAGAGCGGCTGCCACACCACCACGACCTCGTCCCTCGTGT
CTGTGTGCTCAGGCCTGCGCCTCTTCTCCAGCGTTGACGATGGCAGTGGCTTTGCCTTTCCTGA
GCAGGTCATCTCCGCATGGGCCCAGGAGGGCATTCAGAACGGCAGGGAAATCTTGCAGAGCCTG
GACTTCAATGTGGATGAGAAGGTGAACCTCTTGGAGCTGACCTGGGCCCTTGACAATGAACTCC
TAACAGTTGACGGTGTCATCCAGCAGGCAGCCCTAGCCTGCTACCGCCAGGAACTGAACTTCCA
CCAAGGGCAAGTGGAGCAGCTGGTGCAGGAGCGGGACAAGGCGAGGCAGGACCTGGAGAAAGCT
GAGAAGAGGAACCTGGACTTTGTGAGAGAAATGGATGACTGCCACTCAGCCCTGGAACAACTCA
CGGAAAAGAAAATCAAGCACCTAGAGCAGGAGTACAGGGGAAGGCTGAGCCTCCTGCGGTCCGA
GGTGGAGATGGAGCGGGAGCTGTTCTGGGAGCAAGCCCGCAGGCAGAGAGCCGTGCTGGAGCAG
GATGTGGGCCGCCTCCAGGCTGAGGAGACCAGTCTGCGTGAGAAACTGACACTGGCTCTCAAGG
AAAACAGTCGATTGCAGAAGGAGATCATAGAAGTGGTGGAAAAGCTTTCGGATTCCGAGAAGCT
GGTTCTCCGCCTGCAGAGTGACCTCCAGTTTGTGCTGAAGGACAAGCTGGAGCCTCAGAGCATG
GAACTCCTGGCCCAGGAAGAGCAGTTCACAGCCATCTTGAATGATTATGAGCTTAAGTGCAGGG
ACCTACAGGACCGCAATGATGAGTTGCAAGCAGAGCTAGAGGGCCTGCGGGTGCGGCTGCCCAG
GAGTCGACAGAGCCCCTCAGGGACCCCAGGCACCCATAGAAGGTGGACCCCTGGACGTGGCCCA
GCAGACAATCTGTTTGTGGGTGAGTCTATCCCAGTGAGTTTGGAGACAGAAATAAAGATGCAGC
AGATGAAAGAAAATTACCAAGAGCTCAGGATGCAGCTGGAGACCAAGGTAAATTACTATGAGAA
GGAAATTGAGGTCATGAAGAGAAACTTTGAGAAGGATAAGAAGGAGATGGAGCAGGCATTTCAG
CTTGAGGTCAGCGTGCTGGAGGGCCAGAAGGCAGATTTGGAGACCCTGTATGCCAAGTCACAGG
AGGTCATCCTGGGCCTGAAGGAGCAGCTGCAGGATGCAGCCCGAAGCCCTGAGCCTGCACCGGC
TGGGCTGGCCCCCTGCTGTGCACAGGCGCTGTGCACTCTGGCCCAGCGGCTAGGGGTGGAGATG
CACCTGCGGCACCAGGACCAGCTCCTGCAGATAAGGAGAGAGGCTGAAGAGGAGCTGAACCAGA
AGCTGTCGTGGCTAGAAGCTCAGCATGCTGCTTGCTGTGAGAGTCTGTCTCTGCAGCATCAGTG
TGAGAAGGACCAGCTGCTGCAGACACATCTGCAGCGAGTAAAGGACCTGGCTGCTCAGCTTGAC
CTGGAGAAGGGGTGGCGGGAGGAGAGGGAGCAGGAGGTCCTGGCACACTGTCGGAGGCAGCAGC
TGAAGCTGCAGGCTNNGGATGAGGAAGAGCAGGCGCGGATCTGCAGGTCGTTCACCCTGGAGAA
GGAGAAGCTAGAACAGACCTACAGGGAGCAAGTGGAGGGACTTGTCCAGGAGGCAGATGTGCTG
CGTGCTCTCCTGAAGAATGGAACCACTGTGGTGAGTGACCAGCAGGAAAGGATACCCGGCTCCA
TGTACCCGGGTCCAGACAGCAGGCAGCAGCCACCAACCTGGCAAACTGTCAGCCCCGATGGGAG
GACAGGAGCACCAGCAGAATGGCCTGGCCCAGGGAGAGCTGATGGCAGAGATCTTCCTGGCCAG
CTCTGTAGTTTAGATGCCGTACCAAGCCCAACCCCTACCCTCCTGTCCAGAAGGTCCTCAGAGA
GCCTGGATGTCAGAGACAACCATCAAGGTCCACTCAGTGCTGAGGAGGGAGCTGTCCCAAAGGA
GCCAGAACCTTCTGCCAGGACCCTAACAGGCCAGGACCAGAAGCTGCCCTTGCCTATTCAGCCA
CAGATGTTGGAGCCATGGTTGGGTCCAGCTGCTGTGGACAGGAAGCCAGACTCTGTTAGGGTTC
AGGGACAGGCTTCAGAAGGGCCTACTGGGGATGATAAAGGTGTCCAAGAGACTCCACTCCAGCT
GAGGGGAGAAACTGCAAGGATGAGACCCTCATTGCCCTACTCTGAGCTCCCAAACCCACAAGAG
GCCAAAGTGATGTCAGTGATGTCAGAGAGTGAGATGAATGATGTGAAGACCAAACTTCTGCAGC
TGGAAGACGTTGTCCGGGCTCTTGAAAAAGCAGATTCCAGAGAGAGTTACAGGGCTGAGTTACA
GAGGCTTTCTGAAGAAAACTCAGTGTTGAAAAGTGACCTGGGGAAGATTCAACTGGAACTGGGA
ACTTCAGAGAGCAGAAATGAAGTGCAGAGGCAGGAAATTGAGGTCTTAAAGAGAGACAAGGAGC
AAGCCTGCTTTGACCTGGAAGAGCTCAGCACACAGACTCAGAAATACAAGGATGAAATGTCACA
GCTCAACTGCAGGATCCTTCAGCTGGAGGGAGATTCTTCTGGTCTCCATACCCAGAAGGAAGAA
AATCACGCTGCTATCCAGGTGTTAATGAAGAAGCTGGAGGAGGCAGAATGCCGGGAGAAGCAGC
AGGGTGATCAAATCAAACACCTGAAAATTGAACTTGAACGTGTGAATGAGGAATGCCAACGCTT
AAGACTGTCACAGGCAGAGCTGACAGGAAGCCTCGAAGAAAGTCAAGGCCAGCTGCACAGTGTC
CAGCTGCGGCTGGAGGCAGCACAATCCCAGCATGACCGGATTGTCCAGGGCCTGCAGGAACAGA
TGAGTCAGTTGGTTCCTGGAGCTCGTGTAGCTGAGCTGCAGCACCTGCTCAGCCTCAGGGAAGA
GGAGGCTGAGCGACTAAATGCACAGCAGGAAGAATACAAGCAGCAGCTGAAGGCCAGGGAGGAC
CAGGTGGAGGAGGCCGAGGCTCGGTTACACAATGTGGAGTGGCTGCTACAGGAGAAGGTGGAGG
AGCTTCGAAAACAGTTTGAGAAGAATACCAGATCTGATCTGCTGCTCAAAGAACTCTATGTGGA
AAATGCCCACCTCATGAAAGCTGTTCAGCTCACAGAAGAGAAGCAGCGAGGAGCCGAGAAGAAA
AACTGCGTCTTAGAAGAAAAAGTTCGAGCTCTCAACAAACTGATCAGTAAGATGGCACCAGCAT
CACTTTCTGTGTAGGGACTGCTGTTCTTGGAGTTCATGTGAAGGAATGTCTTTTTAAATAATGC
TACTCTGATGCCATAATTTTCTATGGCTCACTAGCTACACTCCCTAGGCATGAGGACTGATTCC
TGTTCATCTGACAAACATTCAATGAATGTCTACTAGGTGCCAGGTTCTGGGGAACAGGCAGGGT
ACAGTCACTGGTGGCCAAGAGTCTTGGGTAACATCCTGGGTTGCAATCTCCAAGTTGATCTTAC
TGGAAAAGACTCAGAGCCTCAGCAAGAACAATGGAGAGAGAGTGGCTCAGTACTTGAATGTGGG
GCTTTGGGCCAGAAACGCAGGGTCGGGATTTAGGTGTCTTACCACTTCACTGCCCTGTGTGGGC
TGTCATCAGAGCTCTCCGTGTGGGTCAGTACACCCCCACCCCACCCCCAGAAAGAGGGCCTTCC
CCTGCAGTCCTCTGCTGCTCCTGAGGGTGGGAGCAAGATGGCATCCGAGGTGGTGGGCTCAGGG
ATAGCAGTGTTCGTTGCGAGTGCAATCTCACTACAAAATATGTTGTCACACTGGAAATTGTACA
TTTTTTTTTAAAAGAAAAGGTATAGTTTTATAACTGAGATGTACCTAAATTATGACCATTTGGT
TTACGAGTATTCTACTGTGATATGAAAAGTTCCTGTATTTTCAATAACTTTTCTATTAAAATTG
TTTTAACTCTT

hide sequence

RefSeq Acc Id:

XM_039106651 ⟹ XP_038962579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	160,208,757 - 160,275,077 (-)	NCBI
mRatBN7.2	3	139,748,353 - 139,814,683 (-)	NCBI

RefSeq Acc Id:

XM_039106653 ⟹ XP_038962581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	160,208,757 - 160,275,074 (-)	NCBI
mRatBN7.2	3	139,748,355 - 139,814,683 (-)	NCBI

RefSeq Acc Id:

XM_039106654 ⟹ XP_038962582

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	160,208,757 - 160,275,074 (-)	NCBI
mRatBN7.2	3	139,748,355 - 139,814,683 (-)	NCBI

RefSeq Acc Id:

XM_039106657 ⟹ XP_038962585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	160,208,757 - 160,243,102 (-)	NCBI
mRatBN7.2	3	139,748,355 - 139,780,387 (-)	NCBI

RefSeq Acc Id:

XM_063285077 ⟹ XP_063141147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	160,208,757 - 160,275,074 (-)	NCBI

RefSeq Acc Id:

XM_063285079 ⟹ XP_063141149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	160,208,757 - 160,243,102 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001417395	(Get FASTA)	NCBI Sequence Viewer
	XP_008760616	(Get FASTA)	NCBI Sequence Viewer
	XP_038962579	(Get FASTA)	NCBI Sequence Viewer
	XP_038962581	(Get FASTA)	NCBI Sequence Viewer
	XP_038962582	(Get FASTA)	NCBI Sequence Viewer
	XP_038962585	(Get FASTA)	NCBI Sequence Viewer
	XP_063141147	(Get FASTA)	NCBI Sequence Viewer
	XP_063141149	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061689
	ENSRNOP00000061689.4
	ENSRNOP00000087279.1
	ENSRNOP00000088771
	ENSRNOP00000088771.1
	ENSRNOP00000098661.1
	ENSRNOP00000100824
	ENSRNOP00000100824.1
	ENSRNOP00000101786
	ENSRNOP00000101786.1

RefSeq Acc Id:

XP_008760616 ⟸ XM_008762394

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDNEEENHYVSRLRDVYSSCDTTGTGFLDQEELTQLCTKLGLEEQLPALLHILLGDGRLARVNF
EEFKEGFVAVLSSATGVEPSDEEGSSSESATSCAVPPKYMSGSKWYGRRSLPELGDSATTTKCG
SEQQAKGSVKPPLRRSASLESVESLKSDEDAESPKEPQNELFEAQGQLRSWGCEVFGTPRKSCS
PSFNTPENQVQGIWHELGVGSSGHLNEQELAVVCRSIGLHGLEKQELEELFSKLDRDGDGRVSL
AEFQLGLFGHEPPSLPASSSLIKPNGPWSHYQEESGCHTTTTSSLVSVCSGLRLFSSVDDGSGF
AFPEQVISAWAQEGIQNGREILQSLDFNVDEKVNLLELTWALDNELLTVDGVIQQAALACYRQE
LNFHQGQVEQLVQERDKARQDLEKAEKRNLDFVREMDDCHSALEQLTEKKIKHLEQEYRGRLSL
LRSEVEMERELFWEQARRQRAVLEQDVGRLQAEETSLREKLTLALKENSRLQKEIIEVVEKLSD
SEKLVLRLQSDLQFVLKDKLEPQSMELLAQEEQFTAILNDYELKCRDLQDRNDELQAELEGLRV
RLPRSRQSPSGTPGTHRRWTPGRGPADNLFVGESIPVSLETEIKMQQMKENYQELRMQLETKVN
YYEKEIEVMKRNFEKDKKEMEQAFQLEVSVLEGQKADLETLYAKSQEVILGLKEQLQDAARSPE
PAPAGLAPCCAQALCTLAQRLGVEMHLRHQDQLLQIRREAEEELNQKLSWLEAQHAACCESLSL
QHQCEKDQLLQTHLQRVKDLAAQLDLEKGWREEREQEVLAHCRRQQLKLQAXDEEEQARICRSF
TLEKEKLEQTYREQVEGLVQEADVLRALLKNGTTVVSDQQERIPGSMYPGPDSRQQPPTWQTVS
PDGRTGAPAEWPGPGRADGRDLPGQLCSLDAVPSPTPTLLSRRSSESLDVRDNHQGPLSAEEGA
VPKEPEPSARTLTGQDQKLPLPIQPQMLEPWLGPAAVDRKPDSVRVQGQASEGPTGDDKGVQET
PLQLRGETARMRPSLPYSELPNPQEAKVMSVMSESEMNDVKTKLLQLEDVVRALEKADSRESYR
AELQRLSEENSVLKSDLGKIQLELGTSESRNEVQRQEIEVLKRDKEQACFDLEELSTQTQKYKD
EMSQLNCRILQLEGDSSGLHTQKEENHAAIQVLMKKLEEAECREKQQGDQIKHLKIELERVNEE
CQRLRLSQAELTGSLEESQGQLHSVQLRLEAAQSQHDRIVQGLQEQMSQLVPGARVAELQHLLS
LREEEAERLNAQQEEYKQQLKAREDQVEEAEARLHNVEWLLQEKVEELRKQFEKNTRSDLLLKE
LYVENAHLMKAVQLTEEKQRGAEKKNCVLEEKVRALNKLISKMAPASLSV

hide sequence

Ensembl Acc Id:

ENSRNOP00000061689 ⟸ ENSRNOT00000068689

RefSeq Acc Id:	XP_038962579 ⟸ XM_039106651
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A773 (UniProtKB/TrEMBL), A0A8I6A2X1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962582 ⟸ XM_039106654
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A2X1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962581 ⟸ XM_039106653
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A773 (UniProtKB/TrEMBL), A0A8I6A2X1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962585 ⟸ XM_039106657
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000088771 ⟸ ENSRNOT00000116558

Ensembl Acc Id:

ENSRNOP00000087279 ⟸ ENSRNOT00000113209

RefSeq Acc Id:	XP_063141147 ⟸ XM_063285077
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A2X1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141149 ⟸ XM_063285079
- Peptide Label:	isoform X6
- UniProtKB:	A6KHH5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101786 ⟸ ENSRNOT00000166583

Ensembl Acc Id:

ENSRNOP00000098661 ⟸ ENSRNOT00000164358

Ensembl Acc Id:

ENSRNOP00000100824 ⟸ ENSRNOT00000163129

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A5N1-F1-model_v2	AlphaFold	D4A5N1	1-1393	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306152	AgrOrtholog
BioCyc Gene	G2FUF-47329	BioCyc
Ensembl Genes	ENSRNOG00000027747	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068689	ENTREZGENE
	ENSRNOT00000068689.5	UniProtKB/TrEMBL
	ENSRNOT00000113209.2	UniProtKB/TrEMBL
	ENSRNOT00000116558	ENTREZGENE
	ENSRNOT00000116558.2	UniProtKB/TrEMBL
	ENSRNOT00000163129	ENTREZGENE
	ENSRNOT00000163129.1	UniProtKB/TrEMBL
	ENSRNOT00000164358.1	UniProtKB/TrEMBL
	ENSRNOT00000166583	ENTREZGENE
	ENSRNOT00000166583.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-like_dom	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_Ca-bd	UniProtKB/TrEMBL
NCBI Gene	311529	ENTREZGENE
PANTHER	NINEIN	UniProtKB/TrEMBL
	NINEIN-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
PhenoGen	Ninl	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000027747	RatGTEx
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8I6A2X1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A773	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L0T2_RAT	UniProtKB/TrEMBL
	A0ABK0LA03_RAT	UniProtKB/TrEMBL
	A0ABK0LDD3_RAT	UniProtKB/TrEMBL
	A6KHH5	ENTREZGENE, UniProtKB/TrEMBL
	D4A5N1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Ninl	ninein-like	Nlp	ninein-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Nlp	ninein-like	RGD1306152_predicted	similar to KIAA0980 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1306152_predicted	similar to KIAA0980 protein (predicted)	LOC311529_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311529_predicted	similar to KIAA0980 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar