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Gene: Rpusd2 (RNA pseudouridine synthase domain containing 2) Rattus norvegicus

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Symbol:

Rpusd2

Name:

RNA pseudouridine synthase domain containing 2

RGD ID:

1306147

Description:

Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis and mRNA pseudouridine synthesis. Orthologous to human RPUSD2 (RNA pseudouridine synthase domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; amphetamine.

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

CG6187-like; LOC100911166; LOC311326; pseudouridylate synthase RPUSD2; RGD1306147; RNA pseudouridylate synthase domain containing 2; RNA pseudouridylate synthase domain-containing protein 2; RNA pseudouridylate synthase domain-containing protein 2-like; similar to RIKEN cDNA 4921503C21

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPUSD2 (RNA pseudouridine synthase domain containing 2)	RGD	RGD
Mus musculus (house mouse):	Rpusd2 (RNA pseudouridylate synthase domain containing 2)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Rpusd2 (RNA pseudouridine synthase domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPUSD2 (RNA pseudouridine synthase domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPUSD2 (RNA pseudouridine synthase domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpusd2 (RNA pseudouridine synthase domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPUSD2 (RNA pseudouridine synthase domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPUSD2 (RNA pseudouridine synthase domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpusd2 (RNA pseudouridine synthase domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rpusd2 (RNA pseudouridine synthase domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NOL4 (nucleolar protein 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RPUSD2 (RNA pseudouridine synthase domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rpusd2 (RNA pseudouridylate synthase domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rpusd2 (RNA pseudouridine synthase domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	K07E8.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PUS6	Alliance	DIOPT (Hieranoid\|OMA\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	PUS6	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	PUS9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PUS9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RIB2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RIB2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RluA-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RluA-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rpusd2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,471,620 - 126,476,869 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	126,471,579 - 126,477,180 (+)	Ensembl				GRCr8
mRatBN7.2	3	106,017,759 - 106,023,010 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,017,864 - 106,023,251 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	109,691,148 - 109,696,390 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,286,690 - 118,291,933 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	115,947,067 - 115,952,310 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	110,835,654 - 110,840,903 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	110,835,683 - 110,840,068 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	3	112,519,808 - 112,525,575 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	117,373,297 - 117,378,546 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	105,542,274 - 105,547,523 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	104,931,377 - 104,936,627 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-diaminodiphenylmethane (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbamazepine (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

formaldehyde (ISO)

gentamycin (EXP)

isobutanol (ISO)

leflunomide (ISO)

paracetamol (EXP)

pioglitazone (ISO)

potassium dichromate (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sodium dichromate (EXP)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

tributylstannane (EXP)

trichloroethene (EXP)

troglitazone (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

enzyme-directed rRNA pseudouridine synthesis (IBA)

mRNA pseudouridine synthesis (IEA,ISO)

pseudouridine synthesis (IEA)

RNA modification (IEA)

Molecular Function

pseudouridine synthase activity (IBA,IEA,ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:22658674

Genomics

Comparative Map Data

Rpusd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,471,620 - 126,476,869 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	126,471,579 - 126,477,180 (+)	Ensembl				GRCr8
mRatBN7.2	3	106,017,759 - 106,023,010 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,017,864 - 106,023,251 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	109,691,148 - 109,696,390 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,286,690 - 118,291,933 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	115,947,067 - 115,952,310 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	110,835,654 - 110,840,903 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	110,835,683 - 110,840,068 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	3	112,519,808 - 112,525,575 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	117,373,297 - 117,378,546 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	105,542,274 - 105,547,523 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	104,931,377 - 104,936,627 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

RPUSD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	40,569,299 - 40,574,949 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	40,569,299 - 40,575,171 (+)	Ensembl			hg38	GRCh38
GRCh37	15	40,861,498 - 40,867,148 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	38,648,829 - 38,653,953 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	15	38,648,828 - 38,653,953	NCBI
Celera	15	17,629,431 - 17,634,555 (+)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	17,708,316 - 17,713,458 (+)	NCBI		HuRef
CHM1_1	15	40,981,616 - 40,986,743 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	38,374,991 - 38,380,643 (+)	NCBI		T2T-CHM13v2.0

Rpusd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	118,865,271 - 118,872,679 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	118,865,271 - 118,870,250 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	119,034,790 - 119,042,198 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	119,034,790 - 119,039,769 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	118,860,526 - 118,867,934 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	118,726,231 - 118,731,210 (+)	NCBI		MGSCv36	mm8
Celera	2	120,186,729 - 120,194,126 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.84	NCBI

Rpusd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	7,482,269 - 7,487,840 (+)	Ensembl
ChiLan1.0	NW_004955416	7,482,226 - 7,485,654 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPUSD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	29,814,762 - 29,819,799 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	33,966,254 - 33,971,294 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	19,514,711 - 19,519,752 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	37,767,822 - 37,772,857 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	37,767,822 - 37,772,857 (+)	Ensembl			panPan2	panpan1.1

RPUSD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	7,735,759 - 7,740,338 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	7,735,808 - 7,740,132 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	7,789,449 - 7,794,020 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	7,861,625 - 7,866,375 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	7,861,654 - 7,868,160 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	7,785,752 - 7,790,323 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	7,892,259 - 7,897,008 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	8,021,191 - 8,025,762 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rpusd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	86,185,996 - 86,190,529 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	4,034,001 - 4,039,137 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	4,034,088 - 4,038,746 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPUSD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	130,738,188 - 130,746,959 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	130,741,191 - 130,746,974 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	145,808,838 - 145,809,966 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPUSD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	42,430,914 - 42,436,137 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	42,429,263 - 42,436,090 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	98,536,103 - 98,541,322 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpusd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	7,867,120 - 7,870,734 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624804	7,867,078 - 7,871,034 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rpusd2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	97,207,430 - 97,212,998 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rpusd2
36 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	385
Count of miRNA genes:	235
Interacting mature miRNAs:	284
Transcripts:	ENSRNOT00000014129, ENSRNOT00000072130
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	122654702	136118980	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	116582412	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	125814931	139636791	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

AU046445

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	106,022,487 - 106,022,655 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	112,524,511 - 112,524,678	NCBI	Rnor6.0
Rnor_6.0	3	110,840,381 - 110,840,548	NCBI	Rnor6.0
Rnor_5.0	3	117,378,024 - 117,378,191	UniSTS	Rnor5.0
Rnor_5.0	3	119,069,191 - 119,069,358	UniSTS	Rnor5.0
RGSC_v3.4	3	105,547,001 - 105,547,168	UniSTS	RGSC3.4
Celera	3	104,936,105 - 104,936,272	UniSTS
Cytogenetic Map	3	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	12	61	130	57	60	41	86	41	298	168	11	121	71	73	19	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014129 ⟹ ENSRNOP00000014129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	126,471,579 - 126,477,180 (+)	Ensembl
mRatBN7.2 Ensembl	3	106,017,864 - 106,023,251 (+)	Ensembl
Rnor_6.0 Ensembl	3	112,519,808 - 112,525,575 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000072130 ⟹ ENSRNOP00000065810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	110,835,683 - 110,840,068 (+)	Ensembl

RefSeq Acc Id:

NM_001135845 ⟹ NP_001129317

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	126,471,620 - 126,476,869 (+)	NCBI
mRatBN7.2	3	106,017,759 - 106,023,010 (+)	NCBI
Rnor_6.0	3	110,835,654 - 110,840,903 (+)	NCBI
Rnor_5.0	3	117,373,297 - 117,378,546 (+)	NCBI
RGSC_v3.4	3	105,542,274 - 105,547,523 (+)	RGD
Celera	3	104,931,377 - 104,936,627 (+)	RGD

Sequence:

show sequence

TCATATCGCGACCCCGAAGCGGCTTGCCATGCTGTTATGTGGCGAAGTGTCCCGGGCTGCCTAC
GGTATATTGTGCAGTGGCAGGTGGCGCTCTGGTCCCACAGCTTTGTCCGGACTTGGGGTAGCTG
TGGGAAGGCGATGACTGAGGCACTCTCTGCGCAAGCCGAGGCAGCGGACGGACTGAAGGCTTTG
ATTGAGCAAAATGGAGATACTGGTAGCGACACCAGGGGAGAGCCGCACCTAGAGCTCCTAGAGC
CAGCGACGGTAGGGAAGCAGGTCCCGGAGAGCGGGGAGCAGGCCCAGGGAGGCGAAGAGCAGCT
CCCGGGGAACGGAGAGCAGGCCCCAACTCCAGTCGCCGACTCAGGCAAGAGGAAAAAGCGGCGG
GGCGCCACTGGGGAACGGGTCGTGCCGCCCCCGAAGAAACGGCGGACTGGGGTGAGCTTTAGCG
ACGAGCACTTTGCAGAGACCACCTACTACTTCGAGGGCGGCTTGCGCAAGGTGCGGCCCTATTA
CTTTGACTTCCAGACCTACTGTAAAGGTCGCTGGGTGGGTCGCAGCTTGTTGCACGTCTTCAGC
ACCGAGTTCCGATCCCAGCCACTGGCTTACTACGAGGCCGCTGTCCGGGCAGGACGCCTGCATC
TCAACGAGGAACCAGTCCAGGACCTCAACATCGTCCTCAAGGACAATGATTTCTTGCGGAACAC
AGTGCACAGACATGAGCCACCAGTCACAGCAGAGCCTATTCGCCTGCTAGCTGAGAACGATGAT
GTGGTTGTTATAGACAAGCCGTCCTCCATTCCTGTCCACCCCTGTGGCCGCTTCCGACACAACA
CGGTCATCTTCATCCTAGGCAAGGAGCACCAACTAAAGGAACTACACCCGTTGCATCGGCTCGA
TCGCCTCACCTCAGGAGTGCTCATGTTTGCCAAGACAGCTGCGGTGTCTGAGAAGATCCATGAA
CAAGTTCGGGATCGGCAGCTGGAGAAGGAATATGTATGCCGGGTTGCAGGGGAGTTCCCTGACA
AGGAGGTAATTTGTAAGGAACCCATCTTAGTGGTATCTTACAAGGTAGGAGTGTGCCGTGTGGA
TCCCCAGGGCAAACCCTGTGAGACTGTGTTCCAGAGGCTGAGCTACAATGGCCGCTCCAGTGTG
GTACAGTGCCGACCACTTACAGGTCGCACTCACCAGATCCGAGTCCACCTCCAGTTCCTGGGCC
ACCCCATTCTCAATGACCCCATCTACAATTCAACTGCCTGGGGTCCTTCTCGAGGCCAGGGTGG
CCACATTCCAAAGACGGACGAGGAACTGCTCCGAGACCTGGTTGCAGAACATCAGGCCAAAGAA
AGCCTGAGTATGCTAGATCTCTGTGAGGGTGACCTGGCTCCAGGGCTCATAGACTCTACAGCTC
CCTCTTCAGAGTTGGGCAAAGACAGCCTGGAAGGGTTGGCTACGGCAGCCCAGAAGATAGATGG
GATGGTGGACGAAGCCTCTCAGCATCCGGACACACCAGGGAAGGCAGCTAAGGCAGACGTGAGT
CAACAAACAGATCCGCTCTGTGCCGAGTGCCGGGTGTTAAGACAGGATCCCTTGCCCCAGGACC
TTGTAATGTTCCTGCATGCCCTCCGCTATAAAGGGCCAGACTTTGAGTACGTCTCACCCATCCC
AGCCTGGGCACAGGCTGACTGGCAAGAAGACTGAGGGATGTGGCCATTGGAAGAATGGCTTTTG
GGTTGGAACAAGGATGGGCCTTGAGGCAGGGACTGCTCCCATTGGTTGGAACTCAGGGTTTGGG
AAAGAGCGAGGTTCTTCCACAGTAAGGAACCTGCTTGTACTTGCTACCTCCTTCCTTCTGGCTT
GTTTGGGGCTTTCAGATCTGTACATATACCATTTTTTATCTAACACCTTTCATGTCCATTTTTA
CTGGTTTCTTACAATCCCTCCACTCTCCCCCAGTGCTTAGGATAGGGTGTAGGTCCATTGTCAA
GGAAGGCAAGTGCTCTACAGCCCCTAAGTATTTTTGAGTTTCTGGAGCTCAGGCCGACCTTGAA
CCCTGACTCCTACTCTGCCTCCAGAGTGGGAATACAGGTGTGAAGCCCCATGCCTTGCCTTTTT
TTTTTTTAAATTGAGATAAAATTCACATAGCATAAAATTAACTGCTTTAAGATAAACACTGGAT
TGGCATTTACTGTGTTCACAAACTTGAGCAACCTTATCTCAAGATTTCAAAACTCATCTCTCAT
CCCTAAAGGGAATCTGTACCTGTTAGGTACATTCTTCCCTTTATCTCTCTCAGCTCCTGGTGAA
CAGTTTATTCTTTATTCCACAGAAATGGACTCAGACAATCTGTGTCTTTTTCTTTTTTCTTTTT
TTTTTTGTTTGTTTTTTGTTTGTTGTTGTTGTTGTATGTTTGTTTTCTGAGACAGGGTTTCTCA
GTGTAACACTGGCTGGTCTTGAATGCACAGAGATCCACCTGCCTCTGCCTCCTAAGTGCTGGGA
TTCAAGGGGCAATGCCACCACCTCCCGGCTACCCAACACATCCTTTTCTGTTTGTTCTACTGAT
TGTGTCTCTCCTGGTGTGTGTGGAGTAATCTCTCATAGTGGAGTTTACTCTTTCTGTTGTGTTG
TTTATTATATATTCTGGACATGAGGCCTCCCTCAACAACAAAAGAATTAGCAGCCCAATTTTAA
AATGTCCAAAAGGATTCTGGTTAACACACACACACACACACACACACACACACACACACACACA
CACACACACACGTCGAAGCTGGAGGGCAATTCTACAGTCTGGTTAAGAGCACTCTTTGCTCTTT
GAGTGGCTCACAACTACCTGATATCCCAGCATCAGGGGATCCTTCCCCTCTTCTGGCCTCTGCC
AGGGCTATATAGTAAGGTATGTTTCAAAATAGCAACAAAGACAGAAGCAGTGCAACTTAACAAA
ACTGACATGTTTTAGAATGGCATATTCCCTGGAGTCAGGACTGTTAACCACTATGGCACTTACT
CAGTTCAAAGCCCTGCCTTCCACAGGTAAGCATTGTGTATATCATGGCTGTCTTTTCACTCCAA
ATTAACTCTTCTCTCATGTGACGAGTATTGTTATTTTCAAAACCACAATTTATCAGCCATTAGC
CACATCAAAATAATTGGATAATGTCTTTCTATT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001129317	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79889	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014129
	ENSRNOP00000014129.6

RefSeq Acc Id:

NP_001129317 ⟸ NM_001135845

- UniProtKB:

D4ACD4 (UniProtKB/TrEMBL), A6HPD8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWRSVPGCLRYIVQWQVALWSHSFVRTWGSCGKAMTEALSAQAEAADGLKALIEQNGDTGSDTR
GEPHLELLEPATVGKQVPESGEQAQGGEEQLPGNGEQAPTPVADSGKRKKRRGATGERVVPPPK
KRRTGVSFSDEHFAETTYYFEGGLRKVRPYYFDFQTYCKGRWVGRSLLHVFSTEFRSQPLAYYE
AAVRAGRLHLNEEPVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENDDVVVIDKPSSIPV
HPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYV
CRVAGEFPDKEVICKEPILVVSYKVGVCRVDPQGKPCETVFQRLSYNGRSSVVQCRPLTGRTHQ
IRVHLQFLGHPILNDPIYNSTAWGPSRGQGGHIPKTDEELLRDLVAEHQAKESLSMLDLCEGDL
APGLIDSTAPSSELGKDSLEGLATAAQKIDGMVDEASQHPDTPGKAAKADVSQQTDPLCAECRV
LRQDPLPQDLVMFLHALRYKGPDFEYVSPIPAWAQADWQED

hide sequence

Ensembl Acc Id:

ENSRNOP00000065810 ⟸ ENSRNOT00000072130

Ensembl Acc Id:

ENSRNOP00000014129 ⟸ ENSRNOT00000014129

Protein Domains

Pseudouridine synthase RsuA/RluA-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACD4-F1-model_v2	AlphaFold	D4ACD4	1-553	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306147	AgrOrtholog
BioCyc Gene	G2FUF-48223	BioCyc
Ensembl Genes	ENSRNOG00000010528	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000046797	Ensembl
Ensembl Transcript	ENSRNOT00000014129	ENTREZGENE
	ENSRNOT00000014129.7	UniProtKB/TrEMBL
Gene3D-CATH	Pseudouridine synthase	UniProtKB/TrEMBL
InterPro	PsdUridine_synth_cat_dom	UniProtKB/TrEMBL
	PsdUridine_synth_RluC/D	UniProtKB/TrEMBL
	PsdUridine_synth_RluC/D_CS	UniProtKB/TrEMBL
	PsdUridine_synth_RsuA/RluD	UniProtKB/TrEMBL
	RluA_PseudoU_synthase	UniProtKB/TrEMBL
KEGG Report	rno:311326	UniProtKB/TrEMBL
NCBI Gene	311326	ENTREZGENE
PANTHER	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	UniProtKB/TrEMBL
	RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 2	UniProtKB/TrEMBL
Pfam	PseudoU_synth_2	UniProtKB/TrEMBL
PhenoGen	Rpusd2	PhenoGen
PROSITE	PSI_RLU	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010528	RatGTEx
	ENSRNOG00000046797	RatGTEx
Superfamily-SCOP	PsdUridine_synth_cat_dom	UniProtKB/TrEMBL
UniProt	A6HPD8	ENTREZGENE, UniProtKB/TrEMBL
	D4ACD4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Rpusd2	RNA pseudouridine synthase domain containing 2	LOC100911166	RNA pseudouridylate synthase domain-containing protein 2-like	Data merged from RGD:6494740	737654	PROVISIONAL
2018-09-21	Rpusd2	RNA pseudouridine synthase domain containing 2	Rpusd2	RNA pseudouridylate synthase domain containing 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100911166	RNA pseudouridylate synthase domain-containing protein 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Rpusd2	RNA pseudouridylate synthase domain containing 2	Rpusd2_predicted	RNA pseudouridylate synthase domain containing 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Rpusd2_predicted	RNA pseudouridylate synthase domain containing 2 (predicted)	RGD1306147_predicted	similar to RIKEN cDNA 4921503C21; CG6187-like (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306147_predicted	similar to RIKEN cDNA 4921503C21; CG6187-like (predicted)	LOC311326_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311326_predicted	similar to RIKEN cDNA 4921503C21; CG6187-like (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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