Pcnx1 (pecanex 1) - Rat Genome Database

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Pathways
Gene: Pcnx1 (pecanex 1) Rattus norvegicus
Analyze
Symbol: Pcnx1
Name: pecanex 1
RGD ID: 1306115
Description: Predicted to be located in membrane. Orthologous to human PCNX1 (pecanex 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC314288; Pcnx; pecanex homolog (Drosophila); pecanex homolog 1; pecanex homolog 1 (Drosophila); pecanex homolog protein 1; pecanex-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86107,296,704 - 107,433,576 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6107,296,792 - 107,432,452 (+)EnsemblGRCr8
mRatBN7.26101,565,461 - 101,702,339 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6101,565,580 - 101,702,271 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6101,720,679 - 101,853,655 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06102,019,879 - 102,152,856 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06101,388,351 - 101,521,308 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06105,611,425 - 105,747,178 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6105,611,456 - 105,743,404 (+)Ensemblrn6Rnor6.0
Rnor_5.06113,754,077 - 113,889,832 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46105,730,206 - 105,863,266 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera699,403,261 - 99,536,244 (+)NCBICelera
RGSC_v3.16105,733,506 - 105,865,786 (+)NCBI
Cytogenetic Map6q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15777640  


Genomics

Comparative Map Data
Pcnx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86107,296,704 - 107,433,576 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6107,296,792 - 107,432,452 (+)EnsemblGRCr8
mRatBN7.26101,565,461 - 101,702,339 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6101,565,580 - 101,702,271 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6101,720,679 - 101,853,655 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06102,019,879 - 102,152,856 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06101,388,351 - 101,521,308 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06105,611,425 - 105,747,178 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6105,611,456 - 105,743,404 (+)Ensemblrn6Rnor6.0
Rnor_5.06113,754,077 - 113,889,832 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46105,730,206 - 105,863,266 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera699,403,261 - 99,536,244 (+)NCBICelera
RGSC_v3.16105,733,506 - 105,865,786 (+)NCBI
Cytogenetic Map6q24NCBI
PCNX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381470,907,459 - 71,115,382 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1470,907,405 - 71,115,382 (+)Ensemblhg38GRCh38
GRCh371471,374,176 - 71,582,099 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361470,443,875 - 70,651,852 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341470,443,874 - 70,646,623NCBI
Celera1451,437,700 - 51,645,359 (+)NCBICelera
Cytogenetic Map14q24.2NCBI
HuRef1451,541,457 - 51,748,835 (+)NCBIHuRef
CHM1_11471,311,762 - 71,520,236 (+)NCBICHM1_1
T2T-CHM13v2.01465,113,121 - 65,320,755 (+)NCBIT2T-CHM13v2.0
Pcnx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391281,906,688 - 82,047,698 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1281,906,797 - 82,047,698 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381281,859,913 - 82,000,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1281,860,023 - 82,000,924 (+)Ensemblmm10GRCm38
MGSCv371282,961,017 - 83,101,911 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361282,779,007 - 82,919,772 (+)NCBIMGSCv36mm8
Celera1283,328,711 - 83,469,453 (+)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1237.98NCBI
Pcnx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555234,100,572 - 4,215,526 (-)Ensembl
ChiLan1.0NW_0049555234,100,572 - 4,215,526 (-)NCBIChiLan1.0ChiLan1.0
PCNX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21572,025,357 - 72,234,370 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11471,241,870 - 71,450,883 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01451,494,857 - 51,703,882 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11470,402,781 - 70,571,415 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1470,399,733 - 70,565,992 (+)EnsemblpanPan2panpan1.1
PCNX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1844,601,122 - 44,731,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl844,598,730 - 44,729,493 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha844,231,686 - 44,395,072 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0844,790,735 - 44,954,180 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl844,789,869 - 44,946,931 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1844,450,964 - 44,614,352 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0844,489,963 - 44,653,277 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0844,850,903 - 45,014,632 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pcnx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864031,417,195 - 31,538,554 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936488530,239 - 650,225 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936488525,340 - 653,192 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCNX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl794,445,270 - 94,614,213 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1794,445,001 - 94,618,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27100,745,861 - 100,864,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCNX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12448,113,578 - 48,314,005 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2448,113,348 - 48,312,922 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605336,337,678 - 36,544,855 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcnx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473430,179,965 - 30,325,659 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473430,171,974 - 30,325,965 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pcnx1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1796,053,621 - 96,187,794 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pcnx1
763 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:463
Count of miRNA genes:213
Interacting mature miRNAs:249
Transcripts:ENSRNOT00000010022
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY771707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010022   ⟹   ENSRNOP00000010022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6107,296,822 - 107,429,811 (+)Ensembl
mRatBN7.2 Ensembl6101,565,580 - 101,698,573 (+)Ensembl
Rnor_6.0 Ensembl6105,611,456 - 105,743,404 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097047   ⟹   ENSRNOP00000088401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6107,296,822 - 107,429,811 (+)Ensembl
mRatBN7.2 Ensembl6101,565,580 - 101,698,573 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108585   ⟹   ENSRNOP00000087947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6107,296,792 - 107,432,452 (+)Ensembl
mRatBN7.2 Ensembl6101,565,580 - 101,702,271 (+)Ensembl
RefSeq Acc Id: NM_001170347   ⟹   NP_001163818
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,296,822 - 107,429,811 (+)NCBI
mRatBN7.26101,565,580 - 101,698,573 (+)NCBI
Rnor_6.06105,611,456 - 105,743,412 (+)NCBI
Rnor_5.06113,754,077 - 113,889,832 (+)NCBI
RGSC_v3.46105,730,206 - 105,863,266 (+)RGD
Celera699,403,261 - 99,536,244 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240299   ⟹   XP_006240361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,296,704 - 107,433,576 (+)NCBI
mRatBN7.26101,565,463 - 101,702,338 (+)NCBI
Rnor_6.06105,611,425 - 105,747,176 (+)NCBI
Rnor_5.06113,754,077 - 113,889,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240302   ⟹   XP_006240364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,296,704 - 107,433,576 (+)NCBI
mRatBN7.26101,565,464 - 101,702,338 (+)NCBI
Rnor_6.06105,611,425 - 105,747,176 (+)NCBI
Rnor_5.06113,754,077 - 113,889,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112294   ⟹   XP_038968222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,296,704 - 107,433,576 (+)NCBI
mRatBN7.26101,565,462 - 101,702,338 (+)NCBI
RefSeq Acc Id: XM_039112295   ⟹   XP_038968223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,296,704 - 107,433,576 (+)NCBI
mRatBN7.26101,565,461 - 101,702,339 (+)NCBI
RefSeq Acc Id: XM_039112296   ⟹   XP_038968224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,296,704 - 107,433,576 (+)NCBI
mRatBN7.26101,565,462 - 101,702,338 (+)NCBI
RefSeq Acc Id: XM_039112298   ⟹   XP_038968226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,312,005 - 107,433,576 (+)NCBI
mRatBN7.26101,580,763 - 101,702,338 (+)NCBI
RefSeq Acc Id: XM_039112299   ⟹   XP_038968227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,296,704 - 107,433,576 (+)NCBI
mRatBN7.26101,565,463 - 101,702,338 (+)NCBI
RefSeq Acc Id: XM_039112300   ⟹   XP_038968228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,363,072 - 107,433,576 (+)NCBI
mRatBN7.26101,631,824 - 101,702,338 (+)NCBI
RefSeq Acc Id: XM_039112301   ⟹   XP_038968229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,356,172 - 107,433,576 (+)NCBI
mRatBN7.26101,624,931 - 101,702,338 (+)NCBI
RefSeq Acc Id: XM_063261934   ⟹   XP_063118004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,296,704 - 107,433,576 (+)NCBI
RefSeq Acc Id: XM_063261935   ⟹   XP_063118005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86107,355,568 - 107,433,576 (+)NCBI
RefSeq Acc Id: NP_001163818   ⟸   NM_001170347
- UniProtKB: E9PSU6 (UniProtKB/TrEMBL),   A0A8I6A512 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240361   ⟸   XM_006240299
- Peptide Label: isoform X2
- UniProtKB: A6JDN9 (UniProtKB/TrEMBL),   A0A8I6A512 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240364   ⟸   XM_006240302
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A512 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010022   ⟸   ENSRNOT00000010022
RefSeq Acc Id: XP_038968223   ⟸   XM_039112295
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A512 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968222   ⟸   XM_039112294
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A512 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968224   ⟸   XM_039112296
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A512 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968227   ⟸   XM_039112299
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A512 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968226   ⟸   XM_039112298
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A512 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968229   ⟸   XM_039112301
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038968228   ⟸   XM_039112300
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000087947   ⟸   ENSRNOT00000108585
Ensembl Acc Id: ENSRNOP00000088401   ⟸   ENSRNOT00000097047
RefSeq Acc Id: XP_063118004   ⟸   XM_063261934
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A512 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118005   ⟸   XM_063261935
- Peptide Label: isoform X10
- UniProtKB: A6JDP0 (UniProtKB/TrEMBL)
Protein Domains
Pecanex C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PSU6-F1-model_v2 AlphaFold E9PSU6 1-2343 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306115 AgrOrtholog
BioCyc Gene G2FUF-36876 BioCyc
Ensembl Genes ENSRNOG00000007459 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010022 ENTREZGENE
  ENSRNOT00000010022.7 UniProtKB/Swiss-Prot
  ENSRNOT00000108585 ENTREZGENE
InterPro Pecanex UniProtKB/Swiss-Prot
  Pecanex_C UniProtKB/Swiss-Prot
KEGG Report rno:314288 UniProtKB/Swiss-Prot
NCBI Gene 314288 ENTREZGENE
PANTHER PECANEX-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR12372 UniProtKB/Swiss-Prot
Pfam Pecanex_C UniProtKB/Swiss-Prot
PhenoGen Pcnx1 PhenoGen
RatGTEx ENSRNOG00000007459 RatGTEx
UniProt A0A8I6A512 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6U4_RAT UniProtKB/TrEMBL
  A6JDN9 ENTREZGENE, UniProtKB/TrEMBL
  A6JDP0 ENTREZGENE, UniProtKB/TrEMBL
  E9PSU6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-20 Pcnx1  pecanex 1  Pcnx1  pecanex homolog 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-06-20 Pcnx1  pecanex homolog 1  Pcnx1  pecanex homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-01-27 Pcnx1  pecanex homolog 1 (Drosophila)  Pcnx  pecanex homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Pcnx  pecanex homolog (Drosophila)  Pcnx_predicted  pecanex homolog (Drosophila) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pcnx_predicted  pecanex homolog (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED