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Gene: Sae1 (SUMO1 activating enzyme subunit 1) Rattus norvegicus

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Symbol:

Sae1

Name:

SUMO1 activating enzyme subunit 1

RGD ID:

1306098

Description:

Predicted to enable several functions, including ATP-dependent protein binding activity; SUMO activating enzyme activity; and protein heterodimerization activity. Predicted to be involved in positive regulation of protein sumoylation and protein sumoylation. Predicted to be located in nucleoplasm. Predicted to be part of SUMO activating enzyme complex. Predicted to be active in cytoplasm. Orthologous to human SAE1 (SUMO1 activating enzyme subunit 1); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 2,6-dinitrotoluene; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC308384; SUMO-activating enzyme subunit 1; ubiquitin-like 1 (sentrin) activating enzyme E1A; ubiquitin-like 1-activating enzyme E1A; Uble1a

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SAE1 (SUMO1 activating enzyme subunit 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Sae1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sae1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SAE1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SAE1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sae1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SAE1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SAE1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sae1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sae1 (SUMO1 activating enzyme subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Sae1 (SUMO1 activating enzyme subunit 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SAE1 (SUMO1 activating enzyme subunit 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sae1 (SUMO1 activating enzyme subunit 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Aos1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	AOS1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	AOS1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	aos-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	aos-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sae1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	86,159,114 - 86,215,089 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	86,159,114 - 86,215,089 (-)	Ensembl				GRCr8
mRatBN7.2	1	77,030,961 - 77,086,937 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	77,030,965 - 77,086,986 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	82,404,938 - 82,460,828 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	90,968,973 - 91,024,858 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	84,160,039 - 84,215,928 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	78,277,524 - 78,333,281 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	78,277,515 - 78,333,321 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	79,530,175 - 79,585,932 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	76,584,876 - 76,640,465 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	71,519,624 - 71,575,626 (-)	NCBI		Celera
RGSC_v3.1	1	76,662,986 - 76,718,576 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-citrinin (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

3-chloropropane-1,2-diol (EXP)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aripiprazole (EXP)

arsenous acid (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

buspirone (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diuron (EXP)

doxorubicin (ISO)

emodin (ISO)

Enterolactone (ISO)

ezogabine (ISO)

fenthion (ISO)

finasteride (EXP)

flutamide (EXP)

furfural (ISO)

haloperidol (ISO)

ivermectin (ISO)

lovastatin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

methidathion (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

nitrates (ISO)

ochratoxin A (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sulfadimethoxine (EXP)

sulindac (EXP)

sunitinib (ISO)

titanium dioxide (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

trovafloxacin (EXP)

warfarin (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

obsolete positive regulation of protein targeting to mitochondrion (ISO)

positive regulation of protein sumoylation (IEA,ISO)

protein sumoylation (IBA,IEA,ISO,ISS)

Cellular Component

cytoplasm (IBA)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

SUMO activating enzyme complex (IBA,IEA,ISO,ISS)

Molecular Function

ATP-dependent protein binding (IEA,ISO)

ligase activity (IEA)

protein binding (ISO)

protein heterodimerization activity (IEA,ISO)

small protein activating enzyme binding (IEA,ISO)

SUMO activating enzyme activity (IBA,IEA,ISO,ISS)

ubiquitin-like modifier activating enzyme activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ubiquitin/proteasome degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10187858	PMID:12477932	PMID:15489334	PMID:15660128	PMID:16791210	PMID:20164921	PMID:21968017	PMID:22082260	PMID:24270810	PMID:28131823

Genomics

Comparative Map Data

Sae1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	86,159,114 - 86,215,089 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	86,159,114 - 86,215,089 (-)	Ensembl				GRCr8
mRatBN7.2	1	77,030,961 - 77,086,937 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	77,030,965 - 77,086,986 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	82,404,938 - 82,460,828 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	90,968,973 - 91,024,858 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	84,160,039 - 84,215,928 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	78,277,524 - 78,333,281 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	78,277,515 - 78,333,321 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	79,530,175 - 79,585,932 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	76,584,876 - 76,640,465 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	71,519,624 - 71,575,626 (-)	NCBI		Celera
RGSC_v3.1	1	76,662,986 - 76,718,576 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

SAE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	47,130,835 - 47,210,636 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	47,113,274 - 47,210,636 (+)	Ensembl			hg38	GRCh38
GRCh37	19	47,634,092 - 47,713,893 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	52,325,984 - 52,405,372 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	44,437,959 - 44,517,752 (+)	NCBI		Celera
Cytogenetic Map	19	q13.32	NCBI
HuRef	19	44,058,151 - 44,138,158 (+)	NCBI		HuRef
CHM1_1	19	47,635,967 - 47,716,295 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	49,956,146 - 50,035,948 (+)	NCBI		T2T-CHM13v2.0

Sae1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	16,054,161 - 16,121,821 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	16,054,159 - 16,121,731 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	16,320,236 - 16,387,896 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	16,320,234 - 16,387,806 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	16,912,403 - 16,973,134 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	15,485,576 - 15,546,307 (-)	NCBI		MGSCv36	mm8
Celera	7	13,522,148 - 13,582,624 (-)	NCBI		Celera
Cytogenetic Map	7	A2	NCBI
cM Map	7	8.88	NCBI

Sae1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955574	1,090,446 - 1,161,972 (+)	Ensembl
ChiLan1.0	NW_004955574	1,090,446 - 1,158,266 (+)	NCBI	ChiLan1.0	ChiLan1.0

SAE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	53,271,579 - 53,350,771 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	55,142,997 - 55,222,139 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	44,114,011 - 44,193,589 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	52,638,928 - 52,717,500 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	52,639,031 - 52,716,634 (+)	Ensembl			panPan2	panpan1.1

SAE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	108,757,543 - 108,864,763 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	108,749,061 - 108,859,797 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	108,237,876 - 108,344,589 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	109,282,795 - 109,389,559 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	109,281,585 - 109,377,042 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	108,950,607 - 109,057,366 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	108,594,516 - 108,701,550 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	109,463,132 - 109,570,055 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sae1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	19,273,265 - 19,334,313 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	891,335 - 952,889 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936664	891,411 - 951,723 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SAE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	52,957,469 - 53,030,582 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	52,957,474 - 53,027,138 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	48,331,068 - 48,401,063 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SAE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	40,472,210 - 40,550,555 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	40,472,220 - 40,550,954 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	20,186,946 - 20,273,733 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sae1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	6,484,945 - 6,556,878 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624832	6,485,137 - 6,556,592 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sae1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	172,681,357 - 172,734,736 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sae1
319 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	98
Count of miRNA genes:	78
Interacting mature miRNAs:	89
Transcripts:	ENSRNOT00000020402
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

RH129134

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	77,030,966 - 77,031,154 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	78,277,530 - 78,277,717	NCBI	Rnor6.0
Rnor_5.0	1	79,530,181 - 79,530,368	UniSTS	Rnor5.0
RGSC_v3.4	1	76,584,882 - 76,585,069	UniSTS	RGSC3.4
Celera	1	71,519,630 - 71,519,817	UniSTS
RH 3.4 Map	1	787.2	UniSTS
Cytogenetic Map	1	q21	UniSTS

BE116482

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	77,058,786 - 77,058,940 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	78,304,961 - 78,305,114	NCBI	Rnor6.0
Rnor_5.0	1	79,557,612 - 79,557,765	UniSTS	Rnor5.0
RGSC_v3.4	1	76,612,317 - 76,612,470	UniSTS	RGSC3.4
Celera	1	71,547,480 - 71,547,633	UniSTS
RH 3.4 Map	1	772.8	UniSTS
Cytogenetic Map	1	q21	UniSTS

BE117351

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	77,055,975 - 77,056,133 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	78,302,150 - 78,302,307	NCBI	Rnor6.0
Rnor_5.0	1	79,554,801 - 79,554,958	UniSTS	Rnor5.0
RGSC_v3.4	1	76,609,502 - 76,609,659	UniSTS	RGSC3.4
Celera	1	71,544,669 - 71,544,826	UniSTS
RH 3.4 Map	1	813.9	UniSTS
Cytogenetic Map	1	q21	UniSTS

fb04e11.y1

Rat Assembly	Chr	Position (strand)	Source
Celera	1	71,554,258 - 71,555,052	UniSTS
Celera	1	71,554,258 - 71,555,060	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020402 ⟹ ENSRNOP00000020402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	86,159,114 - 86,215,089 (-)	Ensembl
mRatBN7.2 Ensembl	1	77,030,965 - 77,086,986 (-)	Ensembl
Rnor_6.0 Ensembl	1	78,277,515 - 78,333,321 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117456 ⟹ ENSRNOP00000078568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	86,159,950 - 86,215,089 (-)	Ensembl
mRatBN7.2 Ensembl	1	77,030,984 - 77,086,915 (-)	Ensembl

RefSeq Acc Id:

NM_001012063 ⟹ NP_001012063

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	86,159,114 - 86,215,089 (-)	NCBI
mRatBN7.2	1	77,030,961 - 77,086,937 (-)	NCBI
Rnor_6.0	1	78,277,524 - 78,333,281 (-)	NCBI
Rnor_5.0	1	79,530,175 - 79,585,932 (-)	NCBI
RGSC_v3.4	1	76,584,876 - 76,640,465 (-)	RGD
Celera	1	71,519,624 - 71,575,626 (-)	RGD

Sequence:

show sequence

GTTAGCGAGAGCGGGATCGGGTGAGCTGAAAGCCGGCGCCATGGTGGAGAAGGAGGAGGTCAGC
GGCGGCGGCGGCGGCATCAGCGAGGAGGAGGCAGCGCAGTATGACCGACAGATCCGCCTGTGGG
GACTGGAGGCTCAGAAGCGGCTTCGAGCTTCTCGGGTACTGATTGTCGGCATGAAAGGACTTGG
GGCTGAAATCGCCAAGAACCTTATCCTGGCAGGAGTGAAAGGGCTCACCATGCTGGACCATGAA
CAGGTATCTCCAGAAGACCTTGGAGCTCAGTTCTTGATTCGAACTGGGTCTGTGGGCCAAAACA
GGGCCGAGGCCTCTTTGGAACGAGCCCAGAATCTCAACCCCATGGTGGATGTAAAGGTGGACAC
TGAGGATATAGAGAAGAAGCCAGAGTCCTTCTTCACAGAGTTTGATGCGGTGTGCCTGACTTGC
TGCTCCAAAGATGTCATCATTAAAGTCGACCAGATCTGTCACAGAAATAGCATCAAGTTCTTCA
CAGGAGATGTCTTTGGGTACCATGGGTACACCTTTGCAAATCTTGGAGAGCATGAATTTGTAGA
AGAGAAAACCAAAGTTACCAAAGTCAGCCAAGGAGTGGAAGATGGACCTGATGCCAAGAGAGCA
AAGCTTGACTCATCGGAGACCACCATGGTCAAAAAGAAAGTGCTTTTCTGCCCTGTAAAGGAAG
CGCTAGCAGTGGACTGGAGTGGAGAGAAAGCCCAGGCTGCCCTGAAGCGCACTGCCCCAGACTA
CTTTCTGCTGCAAGTGTTGCTGAAGTTCCGCACGGATAAAGGGAGAGACCCTACTTCTGACAGC
TACAGCGAGGATGCCGAGCTGCTGCTGCAGATACGCAATGACGTGTTTGACTCGCTGGGCGTCA
GTCCTGACCTGCTTCCCGATGACTTTGTCAGGTACTGCTTCTCTGAGATGGCCCCAGTATGTGC
TGTGGTTGGAGGAATCTTGGCACAGGAAATTGTGAAGGCCCTGTCTCAAAGGGACCCTCCTCAC
AACAACTTCTTCTTCTTCGATGGCATGAAGGGGAGTGGAATTGTGGAGTGCCTTGGTCCCCAGT
GAGCCTGAGGTGTGTGCAACGCCACTGAGTCACCTATCCTCTCTATGAAGGCATGTCTGGATCG
TTTTTTTCTAGAGCAAGAAGACGAGGTTTCATCCCAAGTTTGTCCTAGCAGCTATCGGGGACCT
GCTGGCTCCCGCGTGTGATAGTCACAAGGCTCCCCTCTGGCACTGGGGACTGACAACACCTGGG
AAGAGCATCATGCTTCGTGGTGTCAGAGTTTCTTCTCACCCTTTGGACTTCTTTCTATAGGTCA
ACAGAGAGGAGCAGGACATGGGTGGGGACCCCAGGCCCAGAGACTCTGAAACCCAATGGATTAT
ACTTCTGCCTGGAGAACTGAGAGCAGCCCTCTTCTTGGCCCTTCCTCAGTCTGTATCCTGGGTT
TTGTAAGGGACGCACCCAGTTGTCATGTCTTTTGGTTGTCAGCCTTTAATGACCAAGCTGTCTT
TTCACCCCAAACAGTTTATTTCTAAAAGGTAGATTTAATGCTAGGGGCCGTTATGCAGCTTGTA
ATCCTAGAAATTGGGATGCCAGGGCAGGAGGGTTGCTGTAAATCAAGGCCAACAGGTCTATAAA
ATGTACCGAGAACCCCTCTCAGAATATAATCAAAGACATATTCCAGAGTTAGGGTGGGCCACTA
TCACCATGTCCCCCAGTTCCTCATATTGGGAGCCAGGTCCTCTGAGGGGAGGGCCGAGTTGGCT
TGGTCTTCCTTCTAGGGTATGGGGGCAACGCGTCTAGATTGTAGATTCCCTTGGTTGTTCATAA
GGAATGATAATAAAGTGCATCCTCTCAAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012063	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79411	(Get FASTA)	NCBI Sequence Viewer
	EDM08327	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020402
	ENSRNOP00000020402.4
GenBank Protein	Q6AXQ0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012063 ⟸ NM_001012063

- UniProtKB:

Q6AXQ0 (UniProtKB/Swiss-Prot), A6J8A6 (UniProtKB/TrEMBL), A0A8I5ZL60 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVEKEEVSGGGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVK
GLTMLDHEQVSPEDLGAQFLIRTGSVGQNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTE
FDAVCLTCCSKDVIIKVDQICHRNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVTKVSQGVE
DGPDAKRAKLDSSETTMVKKKVLFCPVKEALAVDWSGEKAQAALKRTAPDYFLLQVLLKFRTDK
GRDPTSDSYSEDAELLLQIRNDVFDSLGVSPDLLPDDFVRYCFSEMAPVCAVVGGILAQEIVKA
LSQRDPPHNNFFFFDGMKGSGIVECLGPQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000020402 ⟸ ENSRNOT00000020402

Ensembl Acc Id:

ENSRNOP00000078568 ⟸ ENSRNOT00000117456

Protein Domains

THIF-type NAD/FAD binding fold

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AXQ0-F1-model_v2	AlphaFold	Q6AXQ0	1-349	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689730

Promoter ID:

EPDNEW_R254

Type:

initiation region

Name:

Sae1_1

Description:

SUMO1 activating enzyme subunit 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	78,333,297 - 78,333,357	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306098	AgrOrtholog
BioCyc Gene	G2FUF-60612	BioCyc
Ensembl Genes	ENSRNOG00000015128	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000020402	ENTREZGENE
	ENSRNOT00000020402.7	UniProtKB/Swiss-Prot
Gene3D-CATH	NAD(P)-binding Rossmann-like Domain	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7113315	IMAGE-MGC_LOAD
InterPro	ThiF/MoeB/HesA	UniProtKB/Swiss-Prot
	ThiF_NAD_FAD-bd	UniProtKB/Swiss-Prot
	Ubiquitin-activating_enz	UniProtKB/Swiss-Prot
	UBQ/SUMO-activ_enz_E1-like	UniProtKB/Swiss-Prot
KEGG Report	rno:308384	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94951	IMAGE-MGC_LOAD
NCBI Gene	308384	ENTREZGENE
PANTHER	PTHR10953	UniProtKB/Swiss-Prot
	SUMO-ACTIVATING ENZYME SUBUNIT 1	UniProtKB/Swiss-Prot
Pfam	ThiF	UniProtKB/Swiss-Prot
PhenoGen	Sae1	PhenoGen
PRINTS	UBIQUITINACT	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000015128	RatGTEx
Superfamily-SCOP	SSF69572	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZL60	ENTREZGENE, UniProtKB/TrEMBL
	A6J8A6	ENTREZGENE, UniProtKB/TrEMBL
	Q6AXQ0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Sae1	SUMO1 activating enzyme subunit 1	Uble1a	ubiquitin-like 1 (sentrin) activating enzyme E1A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Uble1a	ubiquitin-like 1 (sentrin) activating enzyme E1A	Uble1a_predicted	ubiquitin-like 1 (sentrin) activating enzyme E1A (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Uble1a_predicted	ubiquitin-like 1 (sentrin) activating enzyme E1A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)