Sfxn4 (sideroflexin 4) - Rat Genome Database

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Gene: Sfxn4 (sideroflexin 4) Rattus norvegicus
Analyze
Symbol: Sfxn4
Name: sideroflexin 4
RGD ID: 1306088
Description: Predicted to enable transmembrane transporter activity. Predicted to be involved in mitochondrial transmembrane transport. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 18. Orthologous to human SFXN4 (sideroflexin 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361778; sideroflexin-4; SLC64A4; solute carrier family 64 member 4
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81269,962,527 - 269,984,849 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1269,962,535 - 269,984,836 (-)EnsemblGRCr8
mRatBN7.21259,976,480 - 259,998,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1259,976,481 - 259,998,754 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1268,183,180 - 268,205,437 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01274,889,206 - 274,911,463 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01267,543,514 - 267,565,755 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01282,213,610 - 282,236,851 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1282,213,675 - 282,235,974 (-)Ensemblrn6Rnor6.0
Rnor_5.01289,552,161 - 289,574,450 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41267,443,207 - 267,465,488 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1255,617,566 - 255,639,818 (-)NCBICelera
RGSC_v3.11267,654,291 - 267,676,502 (-)NCBI
Cytogenetic Map1q55NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14651853   PMID:18614015   PMID:30442778  


Genomics

Comparative Map Data
Sfxn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81269,962,527 - 269,984,849 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1269,962,535 - 269,984,836 (-)EnsemblGRCr8
mRatBN7.21259,976,480 - 259,998,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1259,976,481 - 259,998,754 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1268,183,180 - 268,205,437 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01274,889,206 - 274,911,463 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01267,543,514 - 267,565,755 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01282,213,610 - 282,236,851 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1282,213,675 - 282,235,974 (-)Ensemblrn6Rnor6.0
Rnor_5.01289,552,161 - 289,574,450 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41267,443,207 - 267,465,488 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1255,617,566 - 255,639,818 (-)NCBICelera
RGSC_v3.11267,654,291 - 267,676,502 (-)NCBI
Cytogenetic Map1q55NCBI
SFXN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810119,140,767 - 119,165,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10119,140,767 - 119,165,714 (-)Ensemblhg38GRCh38
GRCh3710120,900,279 - 120,925,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610120,890,415 - 120,915,194 (-)NCBIBuild 36Build 36hg18NCBI36
Celera10114,629,997 - 114,654,783 (-)NCBICelera
Cytogenetic Map10q26.11NCBI
HuRef10114,530,031 - 114,554,766 (-)NCBIHuRef
CHM1_110121,184,803 - 121,209,578 (-)NCBICHM1_1
T2T-CHM13v2.010120,036,176 - 120,061,128 (-)NCBIT2T-CHM13v2.0
Sfxn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391960,824,747 - 60,850,222 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1960,825,715 - 60,849,917 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381960,836,309 - 60,861,533 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1960,837,277 - 60,861,479 (-)Ensemblmm10GRCm38
MGSCv371960,913,180 - 60,937,333 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361960,893,424 - 60,916,075 (-)NCBIMGSCv36mm8
Celera1963,046,475 - 63,072,828 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.52NCBI
SFXN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28130,986,803 - 131,024,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110130,993,463 - 131,029,813 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010115,700,886 - 115,736,359 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110119,135,702 - 119,160,711 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10119,135,711 - 119,160,711 (-)EnsemblpanPan2panpan1.1
SFXN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12829,371,427 - 29,393,649 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2829,359,488 - 29,393,302 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2829,501,241 - 29,535,619 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02829,889,883 - 29,924,274 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2829,890,373 - 29,925,030 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12829,444,300 - 29,478,658 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02829,463,811 - 29,498,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02829,658,094 - 29,692,737 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sfxn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721316,966,451 - 16,983,788 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364868,578,199 - 8,594,863 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364868,577,510 - 8,594,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFXN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14129,032,076 - 129,075,484 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114129,047,831 - 129,075,798 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214140,574,832 - 140,600,398 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SFXN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19111,932,754 - 111,955,849 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9111,933,083 - 111,955,833 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604873,202,622 - 73,227,983 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sfxn4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1255,294,535 - 55,316,773 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:46
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000054674
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
71112Bw115Body weight QTL 11560.0001body mass (VT:0001259)body weight (CMO:0000012)1269633753270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1578775Iddm21Insulin dependent diabetes mellitus QTL 214.13blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1245782829270518180Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1255849111270518180Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1247133834270518180Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
737975Bw122Body weight QTL 1229.110.005body mass (VT:0001259)body weight (CMO:0000012)1269158828270108840Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat
1600390Niddm64Non-insulin dependent diabetes mellitus QTL 640.003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1257624997270518180Rat

Markers in Region
RH131437  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21259,976,525 - 259,976,729 (+)MAPPERmRatBN7.2
Rnor_6.01282,213,656 - 282,213,859NCBIRnor6.0
Rnor_5.01289,552,207 - 289,552,410UniSTSRnor5.0
RGSC_v3.41267,443,253 - 267,443,456UniSTSRGSC3.4
Celera1255,617,612 - 255,617,815UniSTS
RH 3.4 Map11708.9UniSTS
Cytogenetic Map1q55UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 165 91 90 59 90 59 6 353 189 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000054674   ⟹   ENSRNOP00000051558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1269,962,535 - 269,984,836 (-)Ensembl
mRatBN7.2 Ensembl1259,976,481 - 259,998,721 (-)Ensembl
Rnor_6.0 Ensembl1282,213,675 - 282,235,974 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094272   ⟹   ENSRNOP00000086368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1259,978,711 - 259,998,729 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103836   ⟹   ENSRNOP00000082296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1269,962,535 - 269,984,836 (-)Ensembl
mRatBN7.2 Ensembl1259,976,488 - 259,998,754 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118122   ⟹   ENSRNOP00000087033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1259,976,488 - 259,998,137 (-)Ensembl
RefSeq Acc Id: NM_001108527   ⟹   NP_001101997
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,962,527 - 269,984,808 (-)NCBI
mRatBN7.21259,976,480 - 259,998,759 (-)NCBI
Rnor_6.01282,213,610 - 282,235,891 (-)NCBI
Rnor_5.01289,552,161 - 289,574,450 (-)NCBI
RGSC_v3.41267,443,207 - 267,465,488 (-)RGD
Celera1255,617,566 - 255,639,818 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231684   ⟹   XP_006231746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,962,528 - 269,984,808 (-)NCBI
mRatBN7.21259,976,481 - 259,998,616 (-)NCBI
Rnor_6.01282,213,611 - 282,236,851 (-)NCBI
Rnor_5.01289,552,161 - 289,574,450 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084758   ⟹   XP_038940686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,962,528 - 269,984,788 (-)NCBI
mRatBN7.21259,976,481 - 259,998,616 (-)NCBI
RefSeq Acc Id: XM_039084760   ⟹   XP_038940688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,962,528 - 269,984,826 (-)NCBI
mRatBN7.21259,976,481 - 259,998,773 (-)NCBI
RefSeq Acc Id: XM_039084761   ⟹   XP_038940689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,962,528 - 269,983,851 (-)NCBI
mRatBN7.21259,976,481 - 259,998,616 (-)NCBI
RefSeq Acc Id: XM_063268895   ⟹   XP_063124965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,962,528 - 269,984,665 (-)NCBI
RefSeq Acc Id: XM_063268902   ⟹   XP_063124972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,962,528 - 269,984,665 (-)NCBI
RefSeq Acc Id: XM_063268909   ⟹   XP_063124979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,962,528 - 269,984,665 (-)NCBI
RefSeq Acc Id: XR_005489366
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,965,968 - 269,984,773 (-)NCBI
mRatBN7.21259,979,916 - 259,998,616 (-)NCBI
RefSeq Acc Id: XR_005489383
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,965,968 - 269,984,773 (-)NCBI
mRatBN7.21259,979,922 - 259,998,616 (-)NCBI
RefSeq Acc Id: XR_005489405
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,974,890 - 269,984,773 (-)NCBI
mRatBN7.21259,988,837 - 259,998,616 (-)NCBI
RefSeq Acc Id: XR_005489406
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,974,890 - 269,984,773 (-)NCBI
mRatBN7.21259,988,837 - 259,998,616 (-)NCBI
RefSeq Acc Id: XR_010055167
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,968,077 - 269,984,773 (-)NCBI
RefSeq Acc Id: XR_010055168
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,968,077 - 269,984,773 (-)NCBI
RefSeq Acc Id: XR_010055169
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81269,974,890 - 269,984,849 (-)NCBI
RefSeq Acc Id: NP_001101997   ⟸   NM_001108527
- UniProtKB: A6JIB0 (UniProtKB/TrEMBL),   A0A8I6A569 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231746   ⟸   XM_006231684
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GFL8 (UniProtKB/TrEMBL),   A0A8I6A569 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051558   ⟸   ENSRNOT00000054674
RefSeq Acc Id: XP_038940688   ⟸   XM_039084760
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038940686   ⟸   XM_039084758
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G785 (UniProtKB/TrEMBL),   A0A8I6A569 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940689   ⟸   XM_039084761
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000082296   ⟸   ENSRNOT00000103836
Ensembl Acc Id: ENSRNOP00000086368   ⟸   ENSRNOT00000094272
Ensembl Acc Id: ENSRNOP00000087033   ⟸   ENSRNOT00000118122
RefSeq Acc Id: XP_063124972   ⟸   XM_063268902
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063124979   ⟸   XM_063268909
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063124965   ⟸   XM_063268895
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZX9-F1-model_v2 AlphaFold D3ZZX9 1-313 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306088 AgrOrtholog
BioCyc Gene G2FUF-55221 BioCyc
Ensembl Genes ENSRNOG00000036572 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000054674 ENTREZGENE
  ENSRNOT00000054674.5 UniProtKB/TrEMBL
  ENSRNOT00000103836 ENTREZGENE
  ENSRNOT00000103836.2 UniProtKB/TrEMBL
InterPro Mtc UniProtKB/TrEMBL
KEGG Report rno:361778 UniProtKB/TrEMBL
NCBI Gene 361778 ENTREZGENE
PANTHER Mtc UniProtKB/TrEMBL
  PTHR11153:SF3 UniProtKB/TrEMBL
Pfam Mtc UniProtKB/TrEMBL
PhenoGen Sfxn4 PhenoGen
RatGTEx ENSRNOG00000036572 RatGTEx
UniProt A0A8I6A569 ENTREZGENE
  A0A8I6G785 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GFL8 ENTREZGENE
  A6JIB0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZZX9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Sfxn4  sideroflexin 4   Sfxn4_predicted  sideroflexin 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sfxn4_predicted  sideroflexin 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED