Cyp2s1 (cytochrome P450, family 2, subfamily s, polypeptide 1) - Rat Genome Database

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Gene: Cyp2s1 (cytochrome P450, family 2, subfamily s, polypeptide 1) Rattus norvegicus
Analyze
Symbol: Cyp2s1
Name: cytochrome P450, family 2, subfamily s, polypeptide 1
RGD ID: 1306078
Description: Predicted to enable several functions, including heme binding activity; monooxygenase activity; and thromboxane-A synthase activity. Predicted to be involved in monocarboxylic acid metabolic process and xenobiotic metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in cytoplasm. Orthologous to human CYP2S1 (cytochrome P450 family 2 subfamily S member 1); PARTICIPATES IN phase I biotransformation pathway via cytochrome P450; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-methylcholanthrene; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cytochrome P450 2S1; LOC308445; similar to cytochrome P450, family 2, subfamily s, polypeptide 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Cyp2s1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,437,741 - 90,453,073 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl190,438,224 - 90,453,073 (-)EnsemblGRCr8
mRatBN7.2181,309,948 - 81,325,303 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,310,451 - 81,325,303 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx186,702,625 - 86,717,474 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0195,253,992 - 95,269,028 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,458,434 - 88,473,284 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,595,211 - 82,610,350 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,595,211 - 82,610,350 (-)Ensemblrn6Rnor6.0
Rnor_5.0183,854,677 - 83,868,967 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4181,008,464 - 81,023,486 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera175,748,428 - 75,763,207 (-)NCBICelera
RGSC_v3.1181,087,648 - 81,101,775 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
2-naphthylamine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
azathioprine  (ISO)
Azoxymethane  (ISO)
beclomethasone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[a]pyrene-7,8-diol  (ISO)
beta-naphthoflavone  (ISO)
biphenyl-4-amine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cortisol  (ISO)
cumene hydroperoxide  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
etoposide  (ISO)
flunisolide  (ISO)
genistein  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
hydroxylamine  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxyacetic acid  (ISO)
Monobutylphthalate  (ISO)
naphthalene  (ISO)
Nutlin-3  (ISO)
obeticholic acid  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
Pf-06840003  (ISO)
pirinixic acid  (ISO)
prednisolone  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rifampicin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
titanium dioxide  (ISO)
triamcinolone acetonide  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Characterization of a new cytochrome P450 enzyme, CYP2S1, in rats: Its regulation by aryl hydrocarbon receptor agonists. Deb S and Bandiera SM, Toxicology. 2009 Oct 31.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:12711469   PMID:21068195  


Genomics

Comparative Map Data
Cyp2s1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,437,741 - 90,453,073 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl190,438,224 - 90,453,073 (-)EnsemblGRCr8
mRatBN7.2181,309,948 - 81,325,303 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,310,451 - 81,325,303 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx186,702,625 - 86,717,474 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0195,253,992 - 95,269,028 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,458,434 - 88,473,284 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,595,211 - 82,610,350 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,595,211 - 82,610,350 (-)Ensemblrn6Rnor6.0
Rnor_5.0183,854,677 - 83,868,967 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4181,008,464 - 81,023,486 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera175,748,428 - 75,763,207 (-)NCBICelera
RGSC_v3.1181,087,648 - 81,101,775 (-)NCBI
Cytogenetic Map1q21NCBI
CYP2S1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,193,219 - 41,207,539 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,193,045 - 41,207,540 (+)Ensemblhg38GRCh38
GRCh371941,699,124 - 41,713,444 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,390,955 - 46,405,284 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341946,390,954 - 46,405,283NCBI
Celera1938,499,270 - 38,513,599 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,131,135 - 38,145,468 (+)NCBIHuRef
CHM1_11941,698,871 - 41,713,172 (+)NCBICHM1_1
T2T-CHM13v2.01944,013,177 - 44,028,420 (+)NCBIT2T-CHM13v2.0
Cyp2s1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,501,894 - 25,515,950 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl725,501,900 - 25,516,338 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38725,802,469 - 25,816,525 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,802,475 - 25,816,913 (-)Ensemblmm10GRCm38
MGSCv37726,587,495 - 26,601,549 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36725,511,236 - 25,525,290 (-)NCBIMGSCv36mm8
Celera720,411,576 - 20,425,630 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map714.05NCBI
LOC102010839
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555168,139 - 182,196 (+)Ensembl
ChiLan1.0NW_004955555167,634 - 183,572 (+)NCBIChiLan1.0ChiLan1.0
CYP2S1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,403,087 - 47,417,496 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,271,326 - 49,285,734 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,185,893 - 38,200,064 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,692,906 - 46,707,004 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,693,025 - 46,705,950 (+)EnsemblpanPan2panpan1.1
CYP2S1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,735,586 - 112,747,534 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,736,706 - 112,747,555 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1112,138,862 - 112,150,468 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01113,333,336 - 113,344,950 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,334,463 - 113,345,278 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,894,082 - 112,905,643 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,526,640 - 112,538,235 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,519,846 - 113,531,479 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CYP2S1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,221,763 - 49,235,330 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1649,221,361 - 49,235,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,925,122 - 44,935,474 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYP2S1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,512,559 - 35,521,775 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607313,709,718 - 13,726,006 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101700677
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462490757,276 - 67,275 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462490757,749 - 67,274 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
LOC116892445
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12168,980,960 - 168,996,564 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cyp2s1
77 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:396
Count of miRNA genes:211
Interacting mature miRNAs:235
Transcripts:ENSRNOT00000028177
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat

Markers in Region
RH136955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,310,529 - 81,310,747 (+)MAPPERmRatBN7.2
Rnor_6.0182,595,290 - 82,595,507NCBIRnor6.0
Rnor_5.0183,854,756 - 83,854,973UniSTSRnor5.0
RGSC_v3.4181,008,543 - 81,008,760UniSTSRGSC3.4
Celera175,748,507 - 75,748,724UniSTS
RH 3.4 Map1826.7UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000028177   ⟹   ENSRNOP00000028177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl190,438,224 - 90,453,073 (-)Ensembl
mRatBN7.2 Ensembl181,310,451 - 81,325,303 (-)Ensembl
Rnor_6.0 Ensembl182,595,211 - 82,610,350 (-)Ensembl
RefSeq Acc Id: NM_001107495   ⟹   NP_001100965
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8190,438,224 - 90,453,073 (-)NCBI
mRatBN7.2181,310,451 - 81,325,303 (-)NCBI
Rnor_6.0182,595,211 - 82,610,350 (-)NCBI
Rnor_5.0183,854,677 - 83,868,967 (-)NCBI
RGSC_v3.4181,008,464 - 81,023,486 (-)RGD
Celera175,748,428 - 75,763,207 (-)RGD
Sequence:
RefSeq Acc Id: XM_039111496   ⟹   XP_038967424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8190,437,741 - 90,447,800 (-)NCBI
mRatBN7.2181,309,948 - 81,320,004 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100965 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967424 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM07993 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000028177
  ENSRNOP00000028177.4
RefSeq Acc Id: NP_001100965   ⟸   NM_001107495
- Peptide Label: precursor
- UniProtKB: D4A820 (UniProtKB/TrEMBL),   A6J991 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028177   ⟸   ENSRNOT00000028177
RefSeq Acc Id: XP_038967424   ⟸   XM_039111496
- Peptide Label: isoform X1
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A820-F1-model_v2 AlphaFold D4A820 1-499 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689829
Promoter ID:EPDNEW_R353
Type:multiple initiation site
Name:Cyp2s1_1
Description:cytochrome P450, family 2, subfamily s, polypeptide 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0182,610,315 - 82,610,375EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306078 AgrOrtholog
BioCyc Gene G2FUF-60352 BioCyc
Ensembl Genes ENSRNOG00000020743 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028177 ENTREZGENE
  ENSRNOT00000028177.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131741 IMAGE-MGC_LOAD
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_E_grp-I_CYP2A-like UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
  Cytochrome_P450_fam2 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report rno:308445 UniProtKB/TrEMBL
MGC_CLONE MGC:95193 IMAGE-MGC_LOAD
NCBI Gene 308445 ENTREZGENE
PANTHER CYTOCHROME P450 2S1 UniProtKB/TrEMBL
  CYTOCHROME P450 508A4-RELATED UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PharmGKB CYP2S1 RGD
PhenoGen Cyp2s1 PhenoGen
PRINTS EP450I UniProtKB/TrEMBL
  EP450ICYP2A UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020743 RatGTEx
Superfamily-SCOP Cytochrome_P450 UniProtKB/TrEMBL
  RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt A6J991 ENTREZGENE, UniProtKB/TrEMBL
  D4A820 ENTREZGENE, UniProtKB/TrEMBL
  Q66H37_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Cyp2s1  cytochrome P450, family 2, subfamily s, polypeptide 1  LOC687052  similar to cytochrome P450, family 2, subfamily s, polypeptide 1  Data merged from RGD:1590117 1643240 APPROVED
2006-11-20 LOC687052  similar to cytochrome P450, family 2, subfamily s, polypeptide 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Cyp2s1  cytochrome P450, family 2, subfamily s, polypeptide 1  Cyp2s1_predicted  cytochrome P450, family 2, subfamily s, polypeptide 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cyp2s1_predicted  cytochrome P450, family 2, subfamily s, polypeptide 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED