Ntsr1 (neurotensin receptor 1) - Rat Genome Database

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Gene: Ntsr1 (neurotensin receptor 1) Rattus norvegicus
Analyze
Symbol: Ntsr1
Name: neurotensin receptor 1
RGD ID: 1306076
Description: Enables identical protein binding activity. Involved in several processes, including amino acid import across plasma membrane; positive regulation of transport; and regulation of inositol phosphate biosynthetic process. Located in several cellular components, including dendrite; perikaryon; and symmetric synapse. Human ortholog(s) of this gene implicated in alcohol dependence; opiate dependence; and schizophrenia. Orthologous to human NTSR1 (neurotensin receptor 1); PARTICIPATES IN calcium/calcium-mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: high-affinity levocabastine-insensitive neurotensin receptor; LOC366274; neurotensin receptor; neurotensin receptor type 1; NT-R-1; NTR1; NTRH; Ntsr
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,983,778 - 188,033,934 (+)NCBIGRCr8
mRatBN7.23167,606,215 - 167,656,371 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,606,215 - 167,656,377 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3171,986,455 - 172,036,627 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,945,543 - 180,995,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,607,136 - 177,657,300 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,982,313 - 176,046,345 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,885,894 - 176,046,345 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,681,394 - 179,747,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,567,488 - 169,633,121 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,473,987 - 169,536,964 (+)NCBI
Celera3164,925,618 - 164,973,840 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Ntsr1Ratalcohol dependence susceptibilityISONTSR1 (Homo sapiens)596948429DNA:SNPs more ...RGD 
Ntsr1RatCOVID-19  ISONTSR1 (Homo sapiens)9068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
Ntsr1RatHyperalgesia  IDA 9743902 RGD 
Ntsr1Ratopiate dependence susceptibilityISONTSR1 (Homo sapiens)11522680DNA:SNP:intron:rs3915568(human)RGD 
Ntsr1RatParkinson's disease  ISONTSR1 (Homo sapiens)9743906 RGD 
Ntsr1Ratschizophrenia  ISONTSR1 (Homo sapiens)36947392DNA:repeat:enhancer:RGD 
Object Symbol
Species
Term
Qualifier
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Original Reference(s)
Ntsr1Ratdevelopmental and epileptic encephalopathy  ISONTSR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:24811917 more ...
Ntsr1Ratdevelopmental and epileptic encephalopathy 33  ISONTSR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathy more ...ClinVarPMID:24811917 more ...
Ntsr1Ratearly infantile epileptic encephalopathy  ISONTSR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:24811917 more ...
Ntsr1Ratepilepsy  ISONTSR1 (Homo sapiens)8554872ClinVar Annotator: match by term: EpilepsyClinVarPMID:25741868
Ntsr1Ratneuronal ceroid lipofuscinosis  ISONTSR1 (Homo sapiens)8554872ClinVar Annotator: match by term: Ceroid storage diseaseClinVarPMID:25921748 more ...
Object Symbol
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Original Reference(s)
Ntsr1Ratautism spectrum disorder  ISONTSR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24781735
Ntsr1RatPain  ISONTSR1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:20727387
Ntsr1Ratschizophrenia  ISONTSR1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20659557

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Original Reference(s)
Ntsr1Rat(S)-nicotine increases expressionISONTSR1 (Homo sapiens)6480464Nicotine results in increased expression of NTSR1 mRNACTDPMID:23825647
Ntsr1Rat1,2-dimethylhydrazine decreases expressionISONtsr1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of NTSR1 mRNACTDPMID:22206623
Ntsr1Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISONtsr1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Ntsr1Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISONtsr1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Ntsr1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NTSR1 mRNACTDPMID:33387578
Ntsr1Rat2,4,6-trinitrobenzenesulfonic acid multiple interactionsISONtsr1 (Mus musculus)6480464NTSR1 protein affects the reaction [Trinitrobenzenesulfonic Acid results in increased expression of VEGFA mRNA]CTDPMID:25307345
Ntsr1Rat2,4,6-trinitrobenzenesulfonic acid increases response to substanceISONtsr1 (Mus musculus)6480464NTSR1 protein results in increased susceptibility to Trinitrobenzenesulfonic AcidCTDPMID:25307345
Ntsr1Rat3,4-methylenedioxymethamphetamine decreases expressionISONtsr1 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of NTSR1 mRNACTDPMID:20188158
Ntsr1Rat4,4'-diaminodiphenylmethane decreases expressionISONtsr1 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of NTSR1 mRNACTDPMID:18648102
Ntsr1Rat5-fluorouracil affects response to substanceISONTSR1 (Homo sapiens)6480464NTSR1 protein affects the susceptibility to FluorouracilCTDPMID:15352031
Ntsr1Rat5-fluorouracil decreases expressionISONTSR1 (Homo sapiens)6480464Fluorouracil results in decreased expression of NTSR1 proteinCTDPMID:15352031
Ntsr1Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of NTSR1 mRNACTDPMID:24780913
Ntsr1Ratacrylamide increases expressionISONtsr1 (Mus musculus)6480464Acrylamide results in increased expression of NTSR1 mRNACTDPMID:30807115
Ntsr1Ratactinomycin D multiple interactionsISONTSR1 (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased expression of NTSR1 mRNACTDPMID:38460933
Ntsr1Rataflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of NTSR1 mRNACTDPMID:23630614
Ntsr1Rataflatoxin B1 increases methylationISONTSR1 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of NTSR1 exonCTDPMID:30157460
Ntsr1Rataflatoxin B1 decreases methylationISONTSR1 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of NTSR1 intronCTDPMID:30157460
Ntsr1RatAflatoxin B2 alpha affects methylationISONTSR1 (Homo sapiens)6480464aflatoxin B2 affects the methylation of NTSR1 intronCTDPMID:30157460
Ntsr1Ratall-trans-retinoic acid increases expressionISONtsr1 (Mus musculus)6480464Tretinoin results in increased expression of NTSR1 mRNACTDPMID:36189433
Ntsr1Ratall-trans-retinoic acid multiple interactionsISONtsr1 (Mus musculus)6480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in increased expression of NTSR1 mRNACTDPMID:36189433

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Biological Process
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Original Reference(s)
Ntsr1Ratadult locomotory behavior acts_upstream_of_or_withinISONtsr1 (Mus musculus)1624291MGI:98735 PMID:15353215RGDPMID:15353215
Ntsr1Ratadult locomotory behavior acts_upstream_of_or_withinIEAUniProtKB:O88319 and ensembl:ENSMUSP000000290841600115GO_REF:0000107EnsemblGO_REF:0000107
Ntsr1Ratassociative learning  IMP 596948424 RGD 
Ntsr1RatcAMP biosynthetic process  IMP 596992334 RGD 
Ntsr1Ratconditioned place preference  IMP 597000687 RGD 
Ntsr1RatD-aspartate import across plasma membrane  IDA 1566569 RGD 
Ntsr1Ratdetection of temperature stimulus involved in sensory perception of pain  IMP 9743979 RGD 
Ntsr1RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Ntsr1RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Ntsr1Ratinositol phosphate catabolic process  IMP 9743914 RGD 
Ntsr1RatL-glutamate import across plasma membrane  IDA 1566569 RGD 
Ntsr1Ratlearning  IMP 9743852 RGD 
Ntsr1Ratnegative regulation of apoptotic process involved_inISONTSR1 (Homo sapiens)1624291 PMID:21725197RGDPMID:21725197
Ntsr1Ratnegative regulation of apoptotic process involved_inIEAUniProtKB:P30989 and ensembl:ENSP000003595321600115GO_REF:0000107EnsemblGO_REF:0000107
Ntsr1Ratnegative regulation of apoptotic process involved_inISSUniProtKB:P309891600115GO_REF:0000024UniProtGO_REF:0000024
Ntsr1Ratnegative regulation of release of sequestered calcium ion into cytosol  IMP 727385 RGD 
Ntsr1Ratnegative regulation of systemic arterial blood pressure  IMP 9727449 RGD 
Ntsr1Ratneuropeptide signaling pathway involved_inISONTSR1 (Homo sapiens)1624291UniProtKB:P30990 more ...RGDPMID:21725197 and PMID:21806946
Ntsr1Ratneuropeptide signaling pathway involved_inIEAUniProtKB:P30989 and ensembl:ENSP000003595321600115GO_REF:0000107EnsemblGO_REF:0000107
Ntsr1Ratneuropeptide signaling pathway involved_inIBAPANTHER:PTN002797656 and UniProtKB:P309891600115GO_REF:0000033GO_CentralGO_REF:0000033
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Cellular Component
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Original Reference(s)
Ntsr1Rataxon  IDA 9743919 RGD 
Ntsr1Rataxon terminus  IDA 9743919 RGD 
Ntsr1Ratcell surface  IDA 9743899 RGD 
Ntsr1Ratcytoplasmic side of plasma membrane  IDA 9831116 RGD 
Ntsr1Ratdendrite  IDA 9743847 RGD 
Ntsr1Ratdendritic shaft  IDA 9831116 RGD 
Ntsr1Ratdendritic spine  IDA 9831116 RGD 
Ntsr1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Ntsr1Ratmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Ntsr1Ratmembrane raft located_inISSUniProtKB:P309891600115GO_REF:0000024UniProtGO_REF:0000024
Ntsr1Ratmembrane raft located_inIEAUniProtKB:P30989 and ensembl:ENSP000003595321600115GO_REF:0000107EnsemblGO_REF:0000107
Ntsr1Ratmembrane raft located_inIEAUniProtKB-SubCell:SL-03701600115GO_REF:0000044UniProtGO_REF:0000044
Ntsr1Ratmembrane raft located_inISONTSR1 (Homo sapiens)1624291 PMID:21725197RGDPMID:21725197
Ntsr1Ratneuron spine  IDA 9743847 RGD 
Ntsr1Ratneuronal cell body  IDA 9831116 RGD 
Ntsr1Ratperikaryon  IDA 9743847 RGD 
Ntsr1Ratperikaryon  IDA 9727454 RGD 
Ntsr1Ratplasma membrane located_inISSUniProtKB:P309891600115GO_REF:0000024UniProtGO_REF:0000024
Ntsr1Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Ntsr1Ratplasma membrane located_inIEAUniProtKB:P30989 and ensembl:ENSP000003595321600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
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Original Reference(s)
Ntsr1RatG protein-coupled neurotensin receptor activity enablesISSUniProtKB:P309891600115GO_REF:0000024UniProtGO_REF:0000024
Ntsr1RatG protein-coupled neurotensin receptor activity enablesIEAInterPro:IPR003984 and InterPro:IPR0039851600115GO_REF:0000002InterProGO_REF:0000002
Ntsr1RatG protein-coupled neurotensin receptor activity enablesIBAMGI:108018 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ntsr1RatG protein-coupled neurotensin receptor activity enablesIEAUniProtKB:P30989 and ensembl:ENSP000003595321600115GO_REF:0000107EnsemblGO_REF:0000107
Ntsr1RatG protein-coupled neurotensin receptor activity enablesISONTSR1 (Homo sapiens)1624291 PMID:21725197 and PMID:8381365RGDPMID:21725197 and PMID:8381365
Ntsr1RatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Ntsr1RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Ntsr1Ratidentical protein binding  IPINtsr1 (Rattus norvegicus)9743899homodimerizationRGD 
Ntsr1Ratidentical protein binding enablesIEAUniProtKB:P30989 and ensembl:ENSP000003595321600115GO_REF:0000107EnsemblGO_REF:0000107
Ntsr1Ratidentical protein binding enablesISONTSR1 (Homo sapiens)1624291UniProtKB:P30989 and PMID:17620610RGDPMID:17620610
Ntsr1Ratprotein binding  IPINts (Rattus norvegicus)9727456 RGD 
Ntsr1Ratprotein binding enablesISONTSR1 (Homo sapiens)1624291UniProtKB:P30990 more ...RGDPMID:17620610 and PMID:23597562
Ntsr1Ratprotein-containing complex binding  IPINtsr2 (Rattus norvegicus)9743899heterodimerizationRGD 
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Imported Annotations - KEGG (archival)

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Original Reference(s)
Ntsr1Ratcalcium/calcium-mediated signaling pathway   IEA 6907045 KEGGrno:04020

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#
Reference Title
Reference Citation
1. Widespread expression in adult rat forebrain of mRNA encoding high-affinity neurotensin receptor. Alexander MJ and Leeman SE, J Comp Neurol. 1998 Dec 28;402(4):475-500.
2. Neurotensin receptor involvement in the rise of extracellular glutamate levels and apoptotic nerve cell death in primary cortical cultures after oxygen and glucose deprivation. Antonelli T, etal., Cereb Cortex. 2008 Aug;18(8):1748-57. Epub 2007 Dec 5.
3. Constitutive activation of the neurotensin receptor 1 by mutation of Phe(358) in Helix seven. Barroso S, etal., Br J Pharmacol. 2002 Feb;135(4):997-1002.
4. Cellular distribution of neurotensin receptors in rat brain: immunohistochemical study using an antipeptide antibody against the cloned high affinity receptor. Boudin H, etal., J Comp Neurol. 1996 Sep 9;373(1):76-89.
5. Correlative ultrastructural distribution of neurotensin receptor proteins and binding sites in the rat substantia nigra. Boudin H, etal., J Neurosci. 1998 Oct 15;18(20):8473-84.
6. Neurotensin activation of the NTR1 on spinally-projecting serotonergic neurons in the rostral ventromedial medulla is antinociceptive. Buhler AV, etal., Pain. 2005 Mar;114(1-2):285-94. Epub 2005 Jan 26.
7. Neurotensin depolarizes globus pallidus neurons in rats via neurotensin type-1 receptor. Chen L, etal., Neuroscience. 2004;125(4):853-9.
8. Effects of neurotensin on discharge rates of rat suprachiasmatic nucleus neurons in vitro. Coogan AN, etal., Neuroscience. 2001;103(3):663-72.
9. Developmental expression of the neurotensin gene in the rat liver. Evers BM, etal., Ann Surg. 1993 Aug;218(2):183-8.
10. Distribution of the neurotensin receptor NTS1 in the rat CNS studied using an amino-terminal directed antibody. Fassio A, etal., Neuropharmacology. 2000 Jun 8;39(8):1430-42.
11. Neurotensin receptor antagonist administered during cocaine withdrawal decreases locomotor sensitization and conditioned place preference. Felszeghy K, etal., Neuropsychopharmacology. 2007 Dec;32(12):2601-10. doi: 10.1038/sj.npp.1301382. Epub 2007 Mar 14.
12. Striatal NTS1 , dopamine D2 and NMDA receptor regulation of pallidal GABA and glutamate release--a dual-probe microdialysis study in the intranigral 6-hydroxydopamine unilaterally lesioned rat. Ferraro L, etal., Eur J Neurosci. 2012 Jan;35(2):207-20. doi: 10.1111/j.1460-9568.2011.07949.x. Epub 2011 Dec 30.
13. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
14. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
15. Intrathecal administration of NTS1 agonists reverses nociceptive behaviors in a rat model of neuropathic pain. Guillemette A, etal., Eur J Pain. 2012 Apr;16(4):473-84. doi: 10.1016/j.ejpain.2011.07.008.
16. Direct analysis of a GPCR-agonist interaction by surface plasmon resonance. Harding PJ, etal., Eur Biophys J. 2006 Oct;35(8):709-12. Epub 2006 May 18.
17. Modulation of the interaction between neurotensin receptor NTS1 and Gq protein by lipid. Inagaki S, etal., J Mol Biol. 2012 Mar 16;417(1-2):95-111. doi: 10.1016/j.jmb.2012.01.023. Epub 2012 Jan 27.
18. Dissection of chromosome 18 blood pressure and salt-sensitivity quantitative trait loci in the spontaneously hypertensive rat. Johnson MD, etal., Hypertension. 2009 Sep;54(3):639-45. Epub 2009 Jul 20.
19. Characterization of neurotensin receptors. Kitabgi P and Pelaprat D, Curr Protoc Pharmacol. 2004 May;Chapter 1:Unit 1.29. doi: 10.1002/0471141755.ph0129s24.
20. The role of neurotensin in passive avoidance learning in the rat central nucleus of amygdala. Laszlo K, etal., Behav Brain Res. 2012 Jan 15;226(2):597-600. doi: 10.1016/j.bbr.2011.08.041. Epub 2011 Sep 21.
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PMID:1694443   PMID:8381365   PMID:8839352   PMID:15353215   PMID:16953387   PMID:17620610   PMID:17664042   PMID:18835308   PMID:20403392   PMID:21725197   PMID:23051748   PMID:24978951  
PMID:25157640   PMID:25807267   PMID:26783230   PMID:26926422   PMID:27523794   PMID:27586561   PMID:28089664   PMID:29596791   PMID:32561375   PMID:34508168   PMID:38395391  



Ntsr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,983,778 - 188,033,934 (+)NCBIGRCr8
mRatBN7.23167,606,215 - 167,656,371 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,606,215 - 167,656,377 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3171,986,455 - 172,036,627 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,945,543 - 180,995,717 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,607,136 - 177,657,300 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,982,313 - 176,046,345 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,885,894 - 176,046,345 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,681,394 - 179,747,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,567,488 - 169,633,121 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,473,987 - 169,536,964 (+)NCBI
Celera3164,925,618 - 164,973,840 (-)NCBICelera
Cytogenetic Map3q43NCBI
NTSR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,708,836 - 62,762,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,708,836 - 62,762,771 (+)EnsemblGRCh38hg38GRCh38
GRCh372061,340,188 - 61,394,123 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,810,634 - 60,864,568 (+)NCBINCBI36Build 36hg18NCBI36
Build 342060,810,633 - 60,864,567NCBI
Celera2058,015,902 - 58,069,780 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,057,195 - 58,112,133 (+)NCBIHuRef
CHM1_12061,240,216 - 61,294,517 (+)NCBICHM1_1
T2T-CHM13v2.02064,507,559 - 64,561,762 (+)NCBIT2T-CHM13v2.0
Ntsr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,141,769 - 180,186,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,141,769 - 180,186,773 (+)EnsemblGRCm39 Ensembl
GRCm382180,499,976 - 180,544,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,499,976 - 180,544,980 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,234,681 - 180,279,684 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,429,384 - 180,474,387 (+)NCBIMGSCv36mm8
Celera2184,584,976 - 184,630,855 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.04NCBI
Ntsr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,348,555 - 1,394,868 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,348,616 - 1,394,798 (-)NCBIChiLan1.0ChiLan1.0
NTSR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,500,208 - 68,551,762 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,493,332 - 68,544,871 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,100,110 - 59,151,563 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,392,736 - 60,446,056 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,392,736 - 60,446,056 (+)Ensemblpanpan1.1panPan2
NTSR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,576,690 - 46,615,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,576,501 - 46,615,206 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,761,069 - 45,799,295 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,445,631 - 47,483,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,445,292 - 47,483,519 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,546,845 - 46,585,056 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,670,214 - 46,708,469 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,425,128 - 47,463,367 (+)NCBIUU_Cfam_GSD_1.0
Ntsr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,786,843 - 194,821,269 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,241,020 - 10,272,816 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,240,990 - 10,272,859 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTSR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,989,402 - 62,033,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,989,601 - 62,038,299 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NTSR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,466,965 - 1,521,681 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,469,378 - 1,521,323 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605049,354,595 - 49,410,303 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntsr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,505,037 - 28,544,122 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,504,814 - 28,543,592 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ntsr1
335 total Variants

Predicted Target Of
Summary Value
Count of predictions:571
Count of miRNA genes:235
Interacting mature miRNAs:296
Transcripts:ENSRNOT00000039780
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat

1 to 10 of 16 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 43 110 64 61 37 11 37 6 148 74 93 21 59 24


RefSeq Transcripts NM_001108967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000039780   ⟹   ENSRNOP00000035997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,606,215 - 167,656,377 (+)Ensembl
Rnor_6.0 Ensembl3175,885,894 - 176,046,345 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082073   ⟹   ENSRNOP00000072865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3175,982,777 - 176,044,152 (+)Ensembl
RefSeq Acc Id: NM_001108967   ⟹   NP_001102437
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,983,778 - 188,033,934 (+)NCBI
mRatBN7.23167,606,215 - 167,656,371 (+)NCBI
Rnor_6.03175,982,313 - 176,046,345 (+)NCBI
Rnor_5.03179,681,394 - 179,747,034 (+)NCBI
RGSC_v3.43169,567,488 - 169,633,121 (+)RGD
Celera3164,925,618 - 164,973,840 (-)RGD
Sequence:
Protein RefSeqs NP_001102437 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88805 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000035997
  ENSRNOP00000035997.2
GenBank Protein P20789 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001102437   ⟸   NM_001108967
- UniProtKB: P20789 (UniProtKB/Swiss-Prot),   A6KM97 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072865   ⟸   ENSRNOT00000082073
Ensembl Acc Id: ENSRNOP00000035997   ⟸   ENSRNOT00000039780
Name Modeler Protein Id AA Range Protein Structure
AF-P20789-F1-model_v2 AlphaFold P20789 1-424 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 24 of 24 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-46329 BioCyc
Ensembl Genes ENSRNOG00000028708 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000039780 ENTREZGENE
  ENSRNOT00000039780.4 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  NT1_rcpt UniProtKB/Swiss-Prot
  NT_rcpt UniProtKB/Swiss-Prot
KEGG Report rno:366274 UniProtKB/Swiss-Prot
NCBI Gene 366274 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot
  NEUROTENSIN RECEPTOR TYPE 1 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen Ntsr1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  NEUROTENSINR UniProtKB/Swiss-Prot
  NEUROTENSN1R UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000028708 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt A6KM97 ENTREZGENE, UniProtKB/TrEMBL
  NTR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ntsr1  neurotensin receptor 1   Ntsr1_predicted  neurotensin receptor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2007-04-24 Ntsr1_predicted  neurotensin receptor 1 (predicted)  Ntsr1  neurotensin receptor 1  Data merged from RGD:619865 737654 APPROVED
2006-03-21 Ntsr1_predicted  neurotensin receptor 1 (predicted)  Ntsr_predicted  neurotensin receptor (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-20 Ntsr1  neurotensin receptor 1  Ntsr  neurotensin receptor  Symbol and Name updated 1299863 APPROVED
2005-01-12 Ntsr_predicted  neurotensin receptor (predicted)      Symbol and Name status set to approved 70820 APPROVED
2002-08-07 Ntsr  neurotensin receptor      Symbol and Name status set to provisional 70820 PROVISIONAL