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Gene: Esf1 (ESF1 nucleolar pre-rRNA processing protein) Rattus norvegicus

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Symbol:

Esf1

Name:

ESF1 nucleolar pre-rRNA processing protein (Ensembl:ESF1 nucleolar pre-rRNA processing protein homolog)

RGD ID:

1306067

Description:

Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleolus and nucleoplasm. Orthologous to human ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ABT1-associated protein; ESF1 homolog; ESF1 nucleolar pre-rRNA processing protein homolog; ESF1, nucleolar pre-rRNA processing protein, homolog; ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae); LOC366203; RGD1306067; similar to chromosome 20 open reading frame 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ESF1 (ESF1 nucleolar pre-rRNA processing protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Esf1 (ESF1 nucleolar pre-rRNA processing protein homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Esf1 (ESF1 nucleolar pre-rRNA processing protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ESF1 (ESF1 nucleolar pre-rRNA processing protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Esf1 (ESF1 nucleolar pre-rRNA processing protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ESF1 (ESF1 nucleolar pre-rRNA processing protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Esf1 (ESF1 nucleolar pre-rRNA processing protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Esf1 (ESF1 nucleolar pre-rRNA processing protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ESF1 (ESF1 nucleolar pre-rRNA processing protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Esf1 (ESF1 nucleolar pre-rRNA processing protein homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	esf1 (ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11417	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ESF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F58B3.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F58B3.4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	esf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	147,908,405 - 147,961,567 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	147,908,405 - 147,961,485 (-)	Ensembl				GRCr8
mRatBN7.2	3	127,454,744 - 127,507,941 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	127,454,811 - 127,507,817 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	131,318,063 - 131,371,009 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	139,902,158 - 139,955,105 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	137,605,302 - 137,658,246 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	133,178,591 - 133,232,358 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	133,178,561 - 133,232,322 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	139,635,099 - 139,688,250 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	128,283,410 - 128,353,739 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	126,101,763 - 126,154,682 (-)	NCBI		Celera
RGSC_v3.1	3	128,189,731 - 128,257,244 (-)	NCBI
Cytogenetic Map	3	q36-q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

casticin (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dicrotophos (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

hexadecanoic acid (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

miconazole (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl isothiocyanate (EXP)

phenobarbital (ISO)

propiconazole (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

sunitinib (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thimerosal (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

rRNA processing (IBA,IEA)

Cellular Component

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

RNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15660422	PMID:22658674	PMID:22681889	PMID:23580065

Genomics

Comparative Map Data

Esf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	147,908,405 - 147,961,567 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	147,908,405 - 147,961,485 (-)	Ensembl				GRCr8
mRatBN7.2	3	127,454,744 - 127,507,941 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	127,454,811 - 127,507,817 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	131,318,063 - 131,371,009 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	139,902,158 - 139,955,105 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	137,605,302 - 137,658,246 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	133,178,591 - 133,232,358 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	133,178,561 - 133,232,322 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	139,635,099 - 139,688,250 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	128,283,410 - 128,353,739 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	126,101,763 - 126,154,682 (-)	NCBI		Celera
RGSC_v3.1	3	128,189,731 - 128,257,244 (-)	NCBI
Cytogenetic Map	3	q36-q41	NCBI

ESF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	13,714,325 - 13,784,919 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	13,714,322 - 13,785,409 (-)	Ensembl			hg38	GRCh38
GRCh37	20	13,694,972 - 13,765,565 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	13,642,969 - 13,713,532 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	13,642,968 - 13,713,532	NCBI
Celera	20	13,765,027 - 13,835,578 (-)	NCBI		Celera
Cytogenetic Map	20	p12.1	NCBI
HuRef	20	13,649,375 - 13,720,216 (-)	NCBI		HuRef
CHM1_1	20	13,694,965 - 13,765,524 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	13,757,729 - 13,828,638 (-)	NCBI		T2T-CHM13v2.0

Esf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	139,961,800 - 140,012,498 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	139,961,803 - 140,012,484 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	140,119,881 - 140,170,558 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	140,119,883 - 140,170,564 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	139,945,617 - 139,996,294 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	139,811,322 - 139,861,999 (-)	NCBI		MGSCv36	mm8
Celera	2	141,305,714 - 141,356,129 (-)	NCBI		Celera
Cytogenetic Map	2	F3	NCBI
cM Map	2	69.2	NCBI

Esf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	23,155,677 - 23,221,027 (-)	Ensembl
ChiLan1.0	NW_004955415	23,156,521 - 23,221,027 (-)	NCBI	ChiLan1.0	ChiLan1.0

ESF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	14,608,655 - 14,679,172 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	14,605,486 - 14,676,003 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	13,680,818 - 13,751,249 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	13,666,156 - 13,734,004 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	13,666,703 - 13,734,004 (-)	Ensembl			panPan2	panpan1.1

ESF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	8,873,230 - 8,938,592 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	8,874,834 - 8,937,096 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	8,684,826 - 8,750,650 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	9,285,761 - 9,351,581 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	9,285,828 - 9,350,080 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	8,885,320 - 8,950,657 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	8,981,582 - 9,046,789 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	9,330,272 - 9,396,080 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Esf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	157,593,651 - 157,665,934 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	6,024,628 - 6,100,606 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	6,025,090 - 6,097,328 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ESF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	22,418,885 - 22,480,224 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	22,418,945 - 22,480,307 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	25,098,801 - 25,160,168 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ESF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	42,600,989 - 42,670,600 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	42,601,007 - 42,668,874 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	2,878,134 - 2,945,157 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Esf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	14,707,599 - 14,777,989 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	14,708,812 - 14,778,283 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Esf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	119,421,243 - 119,473,672 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Esf1
302 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	325
Count of miRNA genes:	191
Interacting mature miRNAs:	223
Transcripts:	ENSRNOT00000034487
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	141508991	166376254	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	136091420	155634702	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

RH127529

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	127,454,805 - 127,454,998 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	133,178,653 - 133,178,845	NCBI	Rnor6.0
Rnor_5.0	3	139,635,161 - 139,635,353	UniSTS	Rnor5.0
RGSC_v3.4	3	128,283,472 - 128,283,664	UniSTS	RGSC3.4
Celera	3	126,101,825 - 126,102,017	UniSTS
RH 3.4 Map	3	1150.8	UniSTS
Cytogenetic Map	3	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC105755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034487 ⟹ ENSRNOP00000037915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	147,908,405 - 147,961,485 (-)	Ensembl
mRatBN7.2 Ensembl	3	127,454,811 - 127,507,817 (-)	Ensembl
Rnor_6.0 Ensembl	3	133,178,561 - 133,232,322 (-)	Ensembl

RefSeq Acc Id:

NM_001100771 ⟹ NP_001094241

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	147,908,405 - 147,961,485 (-)	NCBI
mRatBN7.2	3	127,454,744 - 127,507,832 (-)	NCBI
Rnor_6.0	3	133,178,591 - 133,232,319 (-)	NCBI
Rnor_5.0	3	139,635,099 - 139,688,250 (-)	NCBI
RGSC_v3.4	3	128,283,410 - 128,353,739 (-)	RGD
Celera	3	126,101,763 - 126,154,682 (-)	RGD

Sequence:

show sequence

GGAATGTGCTCCATGTGAACTCAGACTGGGATCGGAAAAGAGTAGTGAGTAACTGTGGTTGTCC
GTCGGTATCTCCTGTGATTTTACTTTGTTTCTCTGGATATTTCTTCATTAAGACTGTAAAAATG
TCCTCCAAACAAGAAATAATGGATGACCAGCGGTTCAGGCGGGTTTCAAAGGATCCCAGATTTT
GGGAAATGCCAGAAAAGGACCGAAAAGTCAAAATTGACAAGAGGTTTCGAGCCATGTTTCATGA
CAAAAAATTTAAATTGAACTATGCCGTTGATAAAAGAGGACGTCCTATTAGCCACAGCACTACA
GAGGACTTGAAGCGTTTCTATGACCTTTCAGACTCTGATTCTGATCTCTCTGATGAAGAAAGTA
AAGTACTGGATGAAAAGAGAGTGAAGGAGAAAAAAAAACAGACCAAAAAGGAAACAAAGTCAAA
AACACCGATTGAGGAGAAAAAGAAAGAAACCAAGAAAACTGACCAAAAGGATTCTATAAATAAA
AATGACTTAAATAATTCTGAAAGAATTCAGAAAATGAAAAACTCACATAAATCTCCGAAGATAG
ATTCAGAAGTAAGTCCCAAAGATAGTGAAGAATCCCTACAAAGTAGAAAAAAGAAAAGGGACAC
CACTGACCTTAGTGTTGAAGCTTCGCCCAAAGGAAAACTGAGGACCAAAGATCCCAGTACCTCT
GCAATGGTGAAATCTTCAACAGTCAGTGGTTCTAAGGCAAAAAGAGAAAAGCAAGCAGTCATAA
TGGCAAAAGACAATGCTGGTAGAATGCTTCACGAAGAGGCCCCGGAGGAAGATTCAGACAGCGC
CAGTGAACTAGGAAGAGATGAGGAATCCGAAGGTGAAATCACAAGTGATGATAGAGCCTCAGCG
GATGACGATGAAAATGAAGATGAAGAAGAAGAGGAGGATGGTGAGGAGGAGGAAGAAGAGGAGG
AAGAGGAAGATGAAAGTGATGATGAAAGTGATAGTGGTCCTGATCTTGCGAGGGGTAAAGGAAA
TGTAGAAACTAGTTCTGAAGATGAAGATGATTTGGCAGATTTATTTCCAGAAGAACCTGGTTTT
GAACATGCTTGGAGAGAATTAGATAAAGATGCTCCTCGGGCTGATGAGATTACACGCCGACTAG
CAGTTTGCAACATGGACTGGGATAGATTAAAGGCAAAAGATCTGCTGGCTCTGTTCAACTCATT
TAAGCCCAAAGGAGGAGTTGTATTTTCTGTGAAGATATATCCTTCGGAGTTTGGAAAGCAGAGG
ATGAAGGAAGAGCAAATTCAAGGCCCCGTGGAGTTACTGAGTATTCCTGAGGATGCCCCTGAAA
AGGACTGGGCCTCTCGAGAGAAGCTAAGAGACTACCAGTTCAAACGATTGAAGTACTATTATGC
AGTAGTGGAGTGTGATTCTCCGGAAACAGCGAGTAAGATTTACGAAGATTGCGATGGCCTGGAA
TTTGAAAGCAGTTGTTCCTTCATAGACCTAAGATTTATACCAGATGATATTACCTTTGATGATG
AGCCCAAGGATGCGGCCTCAGAAGTTGATCTAACAGCATATAAACCAAAGTATTTCACATCTGC
TGCAATGGGAACATCAACGGTGGAGATCACTTGGGATGAGACTGATCACGAAAGAATCACGACA
CTGAACAGAAAGTTTAAAAAGGATGAGCTTTTGGACATGGACTTTGAAGCCTACTTGGCTTCTT
CCAGCGAGGATGAGGAAGAGGTGGAGGAAGCACCAGAAGGTGAAGATGGAGTCAGCATAGAAGA
TGGGAAAACAAAGAAAAGTCAGAAGGATGATGAAGAACAAATTGCAAAATATAGACAGCTCTTG
CAGGTTATTCAAGAAAAAGAAAAGAAAGGAAAAGAAAATGATATGGAAATGGAAATCAAGTGGG
TTCCAGGACTTAAGGAGAGTGCAGAAGAGATGGTCAAAAACAAGTTGGAGGGAAAGGATAAACT
GACCCCTTGGGAACAATTCTTAGAGAAGAAGAAAGAGAAGAAAAGACTGAAAAAGAAACAGAAG
GCTCTTGCTGAAGAAGCCAGTGAAGATGAGATTCCTTCTGATGTTGATCTAAATGATCCCTACT
TTGCTGAAGAAGTTAAAAAAATAGGTATAAAGAAAAAATCAATGAAATCTGCAAAAGACGGCGC
AACTTCAGAGGAAGAAACTGAACTAGAAAAACAAAAGGCCGAGATGGCTTTACTTGTAATGGAT
GAGGAAGAGGATAGCAAGAAACACTTCAATTATGACAAGATCGTAGAGCACCAGAATCTGAGCA
AAAAGAAGAAGAAACAGCTTATGAAAAAGAAGGAGTTACTTGAAGATGACTTTGAGGTAAATGT
CAGTGATGCACGGTTTCAGGCAATGTACACTTCCCACTTGTTCAATTTGGATCCCTCTGATCCT
AATTTCAAGAAAACAAAAGCTATGGAAAAAATTCTGGAGGAGAAAGCACGACATCGAGAACAGA
AAGAAGAACGACTCATTCAAGCAGTGGAGAGAGCACAGCAGGACACGGGAAAGCCAGCACAGAA
GCAACCCATGGATCCCGCCTTGTCCATGCTGATTAAATCTGTGAAAAACAAAACAGAGCAGTTC
CAAGCCAGGAAAAAACAGAGGATCAAATAACTGAGATAGCCTCTGCTATCTCCTCAAGTGTACA
GAATTAGCCAGCGTAAAGGATAGTGGGAAAAAAGCCACCTTTCTAGAATATGAAAAATACCCTT
TTCTGACCATCGTGAAGTTTCTCTTCATTGGGGCTGGAGAGATGGCTCAACACAAGAATAATGT
TGTTCTTGCAGAGGATCTTAGTTTGGTTCCCAGCACCCACATGCAGTTCACAACCATATGTAAT
TCCATATGTAATTCTTGTGCCTTCTCCTGGCCTCTGTGGGCCACGGTCTCCTTGCCCATAGTGT
GTGCATAAACATAATTCCAGGCAAAATATACACACACAGTAAATTTTTAAACTTAGAAAAAATG
TTCCCCTTATGTAATTGTTTACCTAACTGTAAATACTTCATGTTTTATACTATGTATTGTCACA
GACTTGCCATAATATAATTATATAAACTATAGAATTCTTAAGACTTTTATATTGTATGAAGTTC
ATTTCCTACAAGTACGGTTACTCTGATTTGGCTCCGTAAGATACTATTTACAGTCTGTGTAAAT
AGTGTCAGTTTTCTGTGTAAAGAGTAAAAACAAATTGAAAATCTGTATATGTAGTACCTTAGTC
TCTGAAGGCAGGAGGCAAATTTGAGAAGCTGGTAAAATAATATATTTTTCTAGTGTAAAGGATG
GAAGCTGTGAACCTTTTCTGTGCTTAGTAATTTGCTTGTAGAACTAACTTATAAATAAAAGTGT
GAGATGGATTTA

hide sequence

RefSeq Acc Id:

XM_006235105 ⟹ XP_006235167

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	147,908,405 - 147,961,498 (-)	NCBI
mRatBN7.2	3	127,454,744 - 127,507,831 (-)	NCBI
Rnor_6.0	3	133,178,591 - 133,232,338 (-)	NCBI
Rnor_5.0	3	139,635,099 - 139,688,250 (-)	NCBI

Sequence:

show sequence

CGTCACGCGAAGGATTGTGGGAATGTGCTCCATGTGAACTCAGACTGGGATCGGAAAAGAGTAG
TGAGTAACTGTGGTTGTCCGTCGGTATCTCCTGTGATTTGTGAGTTGAGTAGTACGCCTGTAGC
TCAGTCCCTTTCTGACTTCACTGTTCCCTTCAGAGCTGCTTCGAGAGAGAGAACGCAGCCGAGT
AACTTACCCCGAAAGTTTGTGAGTACTTTGTTTCTCTGGATATTTCTTCATTAAGACTGTAAAA
ATGTCCTCCAAACAAGAAATAATGGATGACCAGCGGTTCAGGCGGGTTTCAAAGGATCCCAGAT
TTTGGGAAATGCCAGAAAAGGACCGAAAAGTCAAAATTGACAAGAGGTTTCGAGCCATGTTTCA
TGACAAAAAATTTAAATTGAACTATGCCGTTGATAAAAGAGGACGTCCTATTAGCCACAGCACT
ACAGAGGACTTGAAGCGTTTCTATGACCTTTCAGACTCTGATTCTGATCTCTCTGATGAAGAAA
GTAAAGTACTGGATGAAAAGAGAGTGAAGGAGAAAAAAAAACAGACCAAAAAGGAAACAAAGTC
AAAAACACCGATTGAGGAGAAAAAGAAAGAAACCAAGAAAACTGACCAAAAGGATTCTATAAAT
AAAAATGACTTAAATAATTCTGAAAGAATTCAGAAAATGAAAAACTCACATAAATCTCCGAAGA
TAGATTCAGAAGTAAGTCCCAAAGATAGTGAAGAATCCCTACAAAGTAGAAAAAAGAAAAGGGA
CACCACTGACCTTAGTGTTGAAGCTTCGCCCAAAGGAAAACTGAGGACCAAAGATCCCAGTACC
TCTGCAATGGTGAAATCTTCAACAGTCAGTGGTTCTAAGGCAAAAAGAGAAAAGCAAGCAGTCA
TAATGGCAAAAGACAATGCTGGTAGAATGCTTCACGAAGAGGCCCCGGAGGAAGATTCAGACAG
CGCCAGTGAACTAGGAAGAGATGAGGAATCCGAAGGTGAAATCACAAGTGATGATAGAGCCTCA
GCGGATGACGATGAAAATGAAGATGAAGAAGAAGAGGAGGATGGTGAGGAGGAGGAAGAAGAGG
AGGAAGAGGAAGATGAAAGTGATGATGAAAGTGATAGTGGTCCTGATCTTGCGAGGGGTAAAGG
AAATGTAGAAACTAGTTCTGAAGATGAAGATGATTTGGCAGATTTATTTCCAGAAGAACCTGGT
TTTGAACATGCTTGGAGAGAATTAGATAAAGATGCTCCTCGGGCTGATGAGATTACACGCCGAC
TAGCAGTTTGCAACATGGACTGGGATAGATTAAAGGCAAAAGATCTGCTGGCTCTGTTCAACTC
ATTTAAGCCCAAAGGAGGAGTTGTATTTTCTGTGAAGATATATCCTTCGGAGTTTGGAAAGCAG
AGGATGAAGGAAGAGCAAATTCAAGGCCCCGTGGAGTTACTGAGTATTCCTGAGGATGCCCCTG
AAAAGGACTGGGCCTCTCGAGAGAAGCTAAGAGACTACCAGTTCAAACGATTGAAGTACTATTA
TGCAGTAGTGGAGTGTGATTCTCCGGAAACAGCGAGTAAGATTTACGAAGATTGCGATGGCCTG
GAATTTGAAAGCAGTTGTTCCTTCATAGACCTAAGATTTATACCAGATGATATTACCTTTGATG
ATGAGCCCAAGGATGCGGCCTCAGAAGTTGATCTAACAGCATATAAACCAAAGTATTTCACATC
TGCTGCAATGGGAACATCAACGGTGGAGATCACTTGGGATGAGACTGATCACGAAAGAATCACG
ACACTGAACAGAAAGTTTAAAAAGGATGAGCTTTTGGACATGGACTTTGAAGCCTACTTGGCTT
CTTCCAGCGAGGATGAGGAAGAGGTGGAGGAAGCACCAGAAGGTGAAGATGGAGTCAGCATAGA
AGATGGGAAAACAAAGAAAAGTCAGAAGGATGATGAAGAACAAATTGCAAAATATAGACAGCTC
TTGCAGGTTATTCAAGAAAAAGAAAAGAAAGGAAAAGAAAATGATATGGAAATGGAAATCAAGT
GGGTTCCAGGACTTAAGGAGAGTGCAGAAGAGATGGTCAAAAACAAGTTGGAGGGAAAGGATAA
ACTGACCCCTTGGGAACAATTCTTAGAGAAGAAGAAAGAGAAGAAAAGACTGAAAAAGAAACAG
AAGGCTCTTGCTGAAGAAGCCAGTGAAGATGAGATTCCTTCTGATGTTGATCTAAATGATCCCT
ACTTTGCTGAAGAAGTTAAAAAAATAGGTATAAAGAAAAAATCAATGAAATCTGCAAAAGACGG
CGCAACTTCAGAGGAAGAAACTGAACTAGAAAAACAAAAGGCCGAGATGGCTTTACTTGTAATG
GATGAGGAAGAGGATAGCAAGAAACACTTCAATTATGACAAGATCGTAGAGCACCAGAATCTGA
GCAAAAAGAAGAAGAAACAGCTTATGAAAAAGAAGGAGTTACTTGAAGATGACTTTGAGGTAAA
TGTCAGTGATGCACGGTTTCAGGCAATGTACACTTCCCACTTGTTCAATTTGGATCCCTCTGAT
CCTAATTTCAAGAAAACAAAAGCTATGGAAAAAATTCTGGAGGAGAAAGCACGACATCGAGAAC
AGAAAGAAGAACGACTCATTCAAGCAGTGGAGAGAGCACAGCAGGACACGGGAAAGCCAGCACA
GAAGCAACCCATGGATCCCGCCTTGTCCATGCTGATTAAATCTGTGAAAAACAAAACAGAGCAG
TTCCAAGCCAGGAAAAAACAGAGGATCAAATAACTGAGATAGCCTCTGCTATCTCCTCAAGTGT
ACAGAATTAGCCAGCGTAAAGGATAGTGGGAAAAAAGCCACCTTTCTAGAATATGAAAAATACC
CTTTTCTGACCATCGTGAAGTTTCTCTTCATTGGGGCTGGAGAGATGGCTCAACACAAGAATAA
TGTTGTTCTTGCAGAGGATCTTAGTTTGGTTCCCAGCACCCACATGCAGTTCACAACCATATGT
AATTCCATATGTAATTCTTGTGCCTTCTCCTGGCCTCTGTGGGCCACGGTCTCCTTGCCCATAG
TGTGTGCATAAACATAATTCCAGGCAAAATATACACACACAGTAAATTTTTAAACTTAGAAAAA
ATGTTCCCCTTATGTAATTGTTTACCTAACTGTAAATACTTCATGTTTTATACTATGTATTGTC
ACAGACTTGCCATAATATAATTATATAAACTATAGAATTCTTAAGACTTTTATATTGTATGAAG
TTCATTTCCTACAAGTACGGTTACTCTGATTTGGCTCCGTAAGATACTATTTACAGTCTGTGTA
AATAGTGTCAGTTTTCTGTGTAAAGAGTAAAAACAAATTGAAAATCTGTATATGTAGTACCTTA
GTCTCTGAAGGCAGGAGGCAAATTTGAGAAGCTGGTAAAATAATATATTTTTCTAGTGTAAAGG
ATGGAAGCTGTGAACCTTTTCTGTGCTTAGTAATTTGCTTGTAGAACTAACTTATAAATAAAAG
TGTGAGATGGATTTA

hide sequence

RefSeq Acc Id:

XM_006235106 ⟹ XP_006235168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	147,908,405 - 147,961,567 (-)	NCBI
mRatBN7.2	3	127,454,744 - 127,507,941 (-)	NCBI
Rnor_6.0	3	133,178,591 - 133,232,358 (-)	NCBI
Rnor_5.0	3	139,635,099 - 139,688,250 (-)	NCBI

Sequence:

show sequence

CGCGTGCCGTTACGGCGGAGCGTCACGCGAAGGATTGTGGGAATGTGCTCCATGTGAACTCAGA
CTGGGATCGGAAAAGAGTATACTTTGTTTCTCTGGATATTTCTTCATTAAGACTGTAAAAATGT
CCTCCAAACAAGAAATAATGGATGACCAGCGGTTCAGGCGGGTTTCAAAGGATCCCAGATTTTG
GGAAATGCCAGAAAAGGACCGAAAAGTCAAAATTGACAAGAGGTTTCGAGCCATGTTTCATGAC
AAAAAATTTAAATTGAACTATGCCGTTGATAAAAGAGGACGTCCTATTAGCCACAGCACTACAG
AGGACTTGAAGCGTTTCTATGACCTTTCAGACTCTGATTCTGATCTCTCTGATGAAGAAAGTAA
AGTACTGGATGAAAAGAGAGTGAAGGAGAAAAAAAAACAGACCAAAAAGGAAACAAAGTCAAAA
ACACCGATTGAGGAGAAAAAGAAAGAAACCAAGAAAACTGACCAAAAGGATTCTATAAATAAAA
ATGACTTAAATAATTCTGAAAGAATTCAGAAAATGAAAAACTCACATAAATCTCCGAAGATAGA
TTCAGAAGTAAGTCCCAAAGATAGTGAAGAATCCCTACAAAGTAGAAAAAAGAAAAGGGACACC
ACTGACCTTAGTGTTGAAGCTTCGCCCAAAGGAAAACTGAGGACCAAAGATCCCAGTACCTCTG
CAATGGTGAAATCTTCAACAGTCAGTGGTTCTAAGGCAAAAAGAGAAAAGCAAGCAGTCATAAT
GGCAAAAGACAATGCTGGTAGAATGCTTCACGAAGAGGCCCCGGAGGAAGATTCAGACAGCGCC
AGTGAACTAGGAAGAGATGAGGAATCCGAAGGTGAAATCACAAGTGATGATAGAGCCTCAGCGG
ATGACGATGAAAATGAAGATGAAGAAGAAGAGGAGGATGGTGAGGAGGAGGAAGAAGAGGAGGA
AGAGGAAGATGAAAGTGATGATGAAAGTGATAGTGGTCCTGATCTTGCGAGGGGTAAAGGAAAT
GTAGAAACTAGTTCTGAAGATGAAGATGATTTGGCAGATTTATTTCCAGAAGAACCTGGTTTTG
AACATGCTTGGAGAGAATTAGATAAAGATGCTCCTCGGGCTGATGAGATTACACGCCGACTAGC
AGTTTGCAACATGGACTGGGATAGATTAAAGGCAAAAGATCTGCTGGCTCTGTTCAACTCATTT
AAGCCCAAAGGAGGAGTTGTATTTTCTGTGAAGATATATCCTTCGGAGTTTGGAAAGCAGAGGA
TGAAGGAAGAGCAAATTCAAGGCCCCGTGGAGTTACTGAGTATTCCTGAGGATGCCCCTGAAAA
GGACTGGGCCTCTCGAGAGAAGCTAAGAGACTACCAGTTCAAACGATTGAAGTACTATTATGCA
GTAGTGGAGTGTGATTCTCCGGAAACAGCGAGTAAGATTTACGAAGATTGCGATGGCCTGGAAT
TTGAAAGCAGTTGTTCCTTCATAGACCTAAGATTTATACCAGATGATATTACCTTTGATGATGA
GCCCAAGGATGCGGCCTCAGAAGTTGATCTAACAGCATATAAACCAAAGTATTTCACATCTGCT
GCAATGGGAACATCAACGGTGGAGATCACTTGGGATGAGACTGATCACGAAAGAATCACGACAC
TGAACAGAAAGTTTAAAAAGGATGAGCTTTTGGACATGGACTTTGAAGCCTACTTGGCTTCTTC
CAGCGAGGATGAGGAAGAGGTGGAGGAAGCACCAGAAGGTGAAGATGGAGTCAGCATAGAAGAT
GGGAAAACAAAGAAAAGTCAGAAGGATGATGAAGAACAAATTGCAAAATATAGACAGCTCTTGC
AGGTTATTCAAGAAAAAGAAAAGAAAGGAAAAGAAAATGATATGGAAATGGAAATCAAGTGGGT
TCCAGGACTTAAGGAGAGTGCAGAAGAGATGGTCAAAAACAAGTTGGAGGGAAAGGATAAACTG
ACCCCTTGGGAACAATTCTTAGAGAAGAAGAAAGAGAAGAAAAGACTGAAAAAGAAACAGAAGG
CTCTTGCTGAAGAAGCCAGTGAAGATGAGATTCCTTCTGATGTTGATCTAAATGATCCCTACTT
TGCTGAAGAAGTTAAAAAAATAGGTATAAAGAAAAAATCAATGAAATCTGCAAAAGACGGCGCA
ACTTCAGAGGAAGAAACTGAACTAGAAAAACAAAAGGCCGAGATGGCTTTACTTGTAATGGATG
AGGAAGAGGATAGCAAGAAACACTTCAATTATGACAAGATCGTAGAGCACCAGAATCTGAGCAA
AAAGAAGAAGAAACAGCTTATGAAAAAGAAGGAGTTACTTGAAGATGACTTTGAGGTAAATGTC
AGTGATGCACGGTTTCAGGCAATGTACACTTCCCACTTGTTCAATTTGGATCCCTCTGATCCTA
ATTTCAAGAAAACAAAAGCTATGGAAAAAATTCTGGAGGAGAAAGCACGACATCGAGAACAGAA
AGAAGAACGACTCATTCAAGCAGTGGAGAGAGCACAGCAGGACACGGGAAAGCCAGCACAGAAG
CAACCCATGGATCCCGCCTTGTCCATGCTGATTAAATCTGTGAAAAACAAAACAGAGCAGTTCC
AAGCCAGGAAAAAACAGAGGATCAAATAACTGAGATAGCCTCTGCTATCTCCTCAAGTGTACAG
AATTAGCCAGCGTAAAGGATAGTGGGAAAAAAGCCACCTTTCTAGAATATGAAAAATACCCTTT
TCTGACCATCGTGAAGTTTCTCTTCATTGGGGCTGGAGAGATGGCTCAACACAAGAATAATGTT
GTTCTTGCAGAGGATCTTAGTTTGGTTCCCAGCACCCACATGCAGTTCACAACCATATGTAATT
CCATATGTAATTCTTGTGCCTTCTCCTGGCCTCTGTGGGCCACGGTCTCCTTGCCCATAGTGTG
TGCATAAACATAATTCCAGGCAAAATATACACACACAGTAAATTTTTAAACTTAGAAAAAATGT
TCCCCTTATGTAATTGTTTACCTAACTGTAAATACTTCATGTTTTATACTATGTATTGTCACAG
ACTTGCCATAATATAATTATATAAACTATAGAATTCTTAAGACTTTTATATTGTATGAAGTTCA
TTTCCTACAAGTACGGTTACTCTGATTTGGCTCCGTAAGATACTATTTACAGTCTGTGTAAATA
GTGTCAGTTTTCTGTGTAAAGAGTAAAAACAAATTGAAAATCTGTATATGTAGTACCTTAGTCT
CTGAAGGCAGGAGGCAAATTTGAGAAGCTGGTAAAATAATATATTTTTCTAGTGTAAAGGATGG
AAGCTGTGAACCTTTTCTGTGCTTAGTAATTTGCTTGTAGAACTAACTTATAAATAAAAGTGTG
AGATGGATTTA

hide sequence

RefSeq Acc Id:

XM_017591950 ⟹ XP_017447439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	147,908,405 - 147,961,483 (-)	NCBI
mRatBN7.2	3	127,454,744 - 127,507,831 (-)	NCBI
Rnor_6.0	3	133,178,591 - 133,232,338 (-)	NCBI

Sequence:

show sequence

CGTCACGCGAAGGATTGTGGGAATGTGCTCCATGTGAACTCAGACTGGGATCGGAAAAGAGTAG
TGAGTAACTGTGGTTGTCCGTCGGTATCTCCTGTGATTTGTGAGTTGAGTAGTACGCCTGTAGC
TCAGTCCCTTTCTGACTTCACTGTTCCCTTCAGAGCTGCTTCGAGAGAGAGAACGCAGCCGAGT
AACTTACCCCGAAAGTTTGTGAGATGCTCATACCAGCCCACATGCCCATGCACTTGTGTGCTCA
TGTTTGGAAGGGTGCTTCTATGTGGAGCCAGAGGTGACTGCTGGTGTCTTCCTCAGTTGCTCTC
ATTGGAACCTGAAGCTCCTCAAATAAGCTAAGTTGGATGAGCAGGGATCCTCCTGTCTCTGCCT
GTCCCAGCTGCTCAGCACTGGGATTACAGTACTTTGTTTCTCTGGATATTTCTTCATTAAGACT
GTAAAAATGTCCTCCAAACAAGAAATAATGGATGACCAGCGGTTCAGGCGGGTTTCAAAGGATC
CCAGATTTTGGGAAATGCCAGAAAAGGACCGAAAAGTCAAAATTGACAAGAGGTTTCGAGCCAT
GTTTCATGACAAAAAATTTAAATTGAACTATGCCGTTGATAAAAGAGGACGTCCTATTAGCCAC
AGCACTACAGAGGACTTGAAGCGTTTCTATGACCTTTCAGACTCTGATTCTGATCTCTCTGATG
AAGAAAGTAAAGTACTGGATGAAAAGAGAGTGAAGGAGAAAAAAAAACAGACCAAAAAGGAAAC
AAAGTCAAAAACACCGATTGAGGAGAAAAAGAAAGAAACCAAGAAAACTGACCAAAAGGATTCT
ATAAATAAAAATGACTTAAATAATTCTGAAAGAATTCAGAAAATGAAAAACTCACATAAATCTC
CGAAGATAGATTCAGAAGTAAGTCCCAAAGATAGTGAAGAATCCCTACAAAGTAGAAAAAAGAA
AAGGGACACCACTGACCTTAGTGTTGAAGCTTCGCCCAAAGGAAAACTGAGGACCAAAGATCCC
AGTACCTCTGCAATGGTGAAATCTTCAACAGTCAGTGGTTCTAAGGCAAAAAGAGAAAAGCAAG
CAGTCATAATGGCAAAAGACAATGCTGGTAGAATGCTTCACGAAGAGGCCCCGGAGGAAGATTC
AGACAGCGCCAGTGAACTAGGAAGAGATGAGGAATCCGAAGGTGAAATCACAAGTGATGATAGA
GCCTCAGCGGATGACGATGAAAATGAAGATGAAGAAGAAGAGGAGGATGGTGAGGAGGAGGAAG
AAGAGGAGGAAGAGGAAGATGAAAGTGATGATGAAAGTGATAGTGGTCCTGATCTTGCGAGGGG
TAAAGGAAATGTAGAAACTAGTTCTGAAGATGAAGATGATTTGGCAGATTTATTTCCAGAAGAA
CCTGGTTTTGAACATGCTTGGAGAGAATTAGATAAAGATGCTCCTCGGGCTGATGAGATTACAC
GCCGACTAGCAGTTTGCAACATGGACTGGGATAGATTAAAGGCAAAAGATCTGCTGGCTCTGTT
CAACTCATTTAAGCCCAAAGGAGGAGTTGTATTTTCTGTGAAGATATATCCTTCGGAGTTTGGA
AAGCAGAGGATGAAGGAAGAGCAAATTCAAGGCCCCGTGGAGTTACTGAGTATTCCTGAGGATG
CCCCTGAAAAGGACTGGGCCTCTCGAGAGAAGCTAAGAGACTACCAGTTCAAACGATTGAAGTA
CTATTATGCAGTAGTGGAGTGTGATTCTCCGGAAACAGCGAGTAAGATTTACGAAGATTGCGAT
GGCCTGGAATTTGAAAGCAGTTGTTCCTTCATAGACCTAAGATTTATACCAGATGATATTACCT
TTGATGATGAGCCCAAGGATGCGGCCTCAGAAGTTGATCTAACAGCATATAAACCAAAGTATTT
CACATCTGCTGCAATGGGAACATCAACGGTGGAGATCACTTGGGATGAGACTGATCACGAAAGA
ATCACGACACTGAACAGAAAGTTTAAAAAGGATGAGCTTTTGGACATGGACTTTGAAGCCTACT
TGGCTTCTTCCAGCGAGGATGAGGAAGAGGTGGAGGAAGCACCAGAAGGTGAAGATGGAGTCAG
CATAGAAGATGGGAAAACAAAGAAAAGTCAGAAGGATGATGAAGAACAAATTGCAAAATATAGA
CAGCTCTTGCAGGTTATTCAAGAAAAAGAAAAGAAAGGAAAAGAAAATGATATGGAAATGGAAA
TCAAGTGGGTTCCAGGACTTAAGGAGAGTGCAGAAGAGATGGTCAAAAACAAGTTGGAGGGAAA
GGATAAACTGACCCCTTGGGAACAATTCTTAGAGAAGAAGAAAGAGAAGAAAAGACTGAAAAAG
AAACAGAAGGCTCTTGCTGAAGAAGCCAGTGAAGATGAGATTCCTTCTGATGTTGATCTAAATG
ATCCCTACTTTGCTGAAGAAGTTAAAAAAATAGGTATAAAGAAAAAATCAATGAAATCTGCAAA
AGACGGCGCAACTTCAGAGGAAGAAACTGAACTAGAAAAACAAAAGGCCGAGATGGCTTTACTT
GTAATGGATGAGGAAGAGGATAGCAAGAAACACTTCAATTATGACAAGATCGTAGAGCACCAGA
ATCTGAGCAAAAAGAAGAAGAAACAGCTTATGAAAAAGAAGGAGTTACTTGAAGATGACTTTGA
GGTAAATGTCAGTGATGCACGGTTTCAGGCAATGTACACTTCCCACTTGTTCAATTTGGATCCC
TCTGATCCTAATTTCAAGAAAACAAAAGCTATGGAAAAAATTCTGGAGGAGAAAGCACGACATC
GAGAACAGAAAGAAGAACGACTCATTCAAGCAGTGGAGAGAGCACAGCAGGACACGGGAAAGCC
AGCACAGAAGCAACCCATGGATCCCGCCTTGTCCATGCTGATTAAATCTGTGAAAAACAAAACA
GAGCAGTTCCAAGCCAGGAAAAAACAGAGGATCAAATAACTGAGATAGCCTCTGCTATCTCCTC
AAGTGTACAGAATTAGCCAGCGTAAAGGATAGTGGGAAAAAAGCCACCTTTCTAGAATATGAAA
AATACCCTTTTCTGACCATCGTGAAGTTTCTCTTCATTGGGGCTGGAGAGATGGCTCAACACAA
GAATAATGTTGTTCTTGCAGAGGATCTTAGTTTGGTTCCCAGCACCCACATGCAGTTCACAACC
ATATGTAATTCCATATGTAATTCTTGTGCCTTCTCCTGGCCTCTGTGGGCCACGGTCTCCTTGC
CCATAGTGTGTGCATAAACATAATTCCAGGCAAAATATACACACACAGTAAATTTTTAAACTTA
GAAAAAATGTTCCCCTTATGTAATTGTTTACCTAACTGTAAATACTTCATGTTTTATACTATGT
ATTGTCACAGACTTGCCATAATATAATTATATAAACTATAGAATTCTTAAGACTTTTATATTGT
ATGAAGTTCATTTCCTACAAGTACGGTTACTCTGATTTGGCTCCGTAAGATACTATTTACAGTC
TGTGTAAATAGTGTCAGTTTTCTGTGTAAAGAGTAAAAACAAATTGAAAATCTGTATATGTAGT
ACCTTAGTCTCTGAAGGCAGGAGGCAAATTTGAGAAGCTGGTAAAATAATATATTTTTCTAGTG
TAAAGGATGGAAGCTGTGAACCTTTTCTGTGCTTAGTAATTTGCTTGTAGAACTAACTTATAAA
TAAAAGTGTGAGATGGATTTA

hide sequence

RefSeq Acc Id:

XM_063284287 ⟹ XP_063140357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	147,908,405 - 147,961,498 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094241	(Get FASTA)	NCBI Sequence Viewer
	NP_001421357	(Get FASTA)	NCBI Sequence Viewer
	NP_001421358	(Get FASTA)	NCBI Sequence Viewer
	XP_006235167	(Get FASTA)	NCBI Sequence Viewer
	XP_006235168	(Get FASTA)	NCBI Sequence Viewer
	XP_017447439	(Get FASTA)	NCBI Sequence Viewer
	XP_063140357	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05756	(Get FASTA)	NCBI Sequence Viewer
	EDL80320	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037915
	ENSRNOP00000037915.4
GenBank Protein	Q76MT4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001094241 ⟸ NM_001100771

- UniProtKB:

Q76MT4 (UniProtKB/Swiss-Prot), A6HQL9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSKQEIMDDQRFRRVSKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPISHST
TEDLKRFYDLSDSDSDLSDEESKVLDEKRVKEKKKQTKKETKSKTPIEEKKKETKKTDQKDSIN
KNDLNNSERIQKMKNSHKSPKIDSEVSPKDSEESLQSRKKKRDTTDLSVEASPKGKLRTKDPST
SAMVKSSTVSGSKAKREKQAVIMAKDNAGRMLHEEAPEEDSDSASELGRDEESEGEITSDDRAS
ADDDENEDEEEEEDGEEEEEEEEEEDESDDESDSGPDLARGKGNVETSSEDEDDLADLFPEEPG
FEHAWRELDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKQ
RMKEEQIQGPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIYEDCDGL
EFESSCSFIDLRFIPDDITFDDEPKDAASEVDLTAYKPKYFTSAAMGTSTVEITWDETDHERIT
TLNRKFKKDELLDMDFEAYLASSSEDEEEVEEAPEGEDGVSIEDGKTKKSQKDDEEQIAKYRQL
LQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLTPWEQFLEKKKEKKRLKKKQ
KALAEEASEDEIPSDVDLNDPYFAEEVKKIGIKKKSMKSAKDGATSEEETELEKQKAEMALLVM
DEEEDSKKHFNYDKIVEHQNLSKKKKKQLMKKKELLEDDFEVNVSDARFQAMYTSHLFNLDPSD
PNFKKTKAMEKILEEKARHREQKEERLIQAVERAQQDTGKPAQKQPMDPALSMLIKSVKNKTEQ
FQARKKQRIK

hide sequence

RefSeq Acc Id:

XP_006235168 ⟸ XM_006235106

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSSKQEIMDDQRFRRVSKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPISHST
TEDLKRFYDLSDSDSDLSDEESKVLDEKRVKEKKKQTKKETKSKTPIEEKKKETKKTDQKDSIN
KNDLNNSERIQKMKNSHKSPKIDSEVSPKDSEESLQSRKKKRDTTDLSVEASPKGKLRTKDPST
SAMVKSSTVSGSKAKREKQAVIMAKDNAGRMLHEEAPEEDSDSASELGRDEESEGEITSDDRAS
ADDDENEDEEEEEDGEEEEEEEEEEDESDDESDSGPDLARGKGNVETSSEDEDDLADLFPEEPG
FEHAWRELDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKQ
RMKEEQIQGPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIYEDCDGL
EFESSCSFIDLRFIPDDITFDDEPKDAASEVDLTAYKPKYFTSAAMGTSTVEITWDETDHERIT
TLNRKFKKDELLDMDFEAYLASSSEDEEEVEEAPEGEDGVSIEDGKTKKSQKDDEEQIAKYRQL
LQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLTPWEQFLEKKKEKKRLKKKQ
KALAEEASEDEIPSDVDLNDPYFAEEVKKIGIKKKSMKSAKDGATSEEETELEKQKAEMALLVM
DEEEDSKKHFNYDKIVEHQNLSKKKKKQLMKKKELLEDDFEVNVSDARFQAMYTSHLFNLDPSD
PNFKKTKAMEKILEEKARHREQKEERLIQAVERAQQDTGKPAQKQPMDPALSMLIKSVKNKTEQ
FQARKKQRIK

hide sequence

RefSeq Acc Id:

XP_006235167 ⟸ XM_006235105

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSSKQEIMDDQRFRRVSKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPISHST
TEDLKRFYDLSDSDSDLSDEESKVLDEKRVKEKKKQTKKETKSKTPIEEKKKETKKTDQKDSIN
KNDLNNSERIQKMKNSHKSPKIDSEVSPKDSEESLQSRKKKRDTTDLSVEASPKGKLRTKDPST
SAMVKSSTVSGSKAKREKQAVIMAKDNAGRMLHEEAPEEDSDSASELGRDEESEGEITSDDRAS
ADDDENEDEEEEEDGEEEEEEEEEEDESDDESDSGPDLARGKGNVETSSEDEDDLADLFPEEPG
FEHAWRELDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKQ
RMKEEQIQGPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIYEDCDGL
EFESSCSFIDLRFIPDDITFDDEPKDAASEVDLTAYKPKYFTSAAMGTSTVEITWDETDHERIT
TLNRKFKKDELLDMDFEAYLASSSEDEEEVEEAPEGEDGVSIEDGKTKKSQKDDEEQIAKYRQL
LQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLTPWEQFLEKKKEKKRLKKKQ
KALAEEASEDEIPSDVDLNDPYFAEEVKKIGIKKKSMKSAKDGATSEEETELEKQKAEMALLVM
DEEEDSKKHFNYDKIVEHQNLSKKKKKQLMKKKELLEDDFEVNVSDARFQAMYTSHLFNLDPSD
PNFKKTKAMEKILEEKARHREQKEERLIQAVERAQQDTGKPAQKQPMDPALSMLIKSVKNKTEQ
FQARKKQRIK

hide sequence

RefSeq Acc Id:	XP_017447439 ⟸ XM_017591950
- Peptide Label:	isoform X1
- UniProtKB:	Q76MT4 (UniProtKB/Swiss-Prot), A6HQL9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSKQEIMDDQRFRRVSKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPISHST TEDLKRFYDLSDSDSDLSDEESKVLDEKRVKEKKKQTKKETKSKTPIEEKKKETKKTDQKDSIN KNDLNNSERIQKMKNSHKSPKIDSEVSPKDSEESLQSRKKKRDTTDLSVEASPKGKLRTKDPST SAMVKSSTVSGSKAKREKQAVIMAKDNAGRMLHEEAPEEDSDSASELGRDEESEGEITSDDRAS ADDDENEDEEEEEDGEEEEEEEEEEDESDDESDSGPDLARGKGNVETSSEDEDDLADLFPEEPG FEHAWRELDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKQ RMKEEQIQGPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIYEDCDGL EFESSCSFIDLRFIPDDITFDDEPKDAASEVDLTAYKPKYFTSAAMGTSTVEITWDETDHERIT TLNRKFKKDELLDMDFEAYLASSSEDEEEVEEAPEGEDGVSIEDGKTKKSQKDDEEQIAKYRQL LQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLTPWEQFLEKKKEKKRLKKKQ KALAEEASEDEIPSDVDLNDPYFAEEVKKIGIKKKSMKSAKDGATSEEETELEKQKAEMALLVM DEEEDSKKHFNYDKIVEHQNLSKKKKKQLMKKKELLEDDFEVNVSDARFQAMYTSHLFNLDPSD PNFKKTKAMEKILEEKARHREQKEERLIQAVERAQQDTGKPAQKQPMDPALSMLIKSVKNKTEQ FQARKKQRIK hide sequence

Ensembl Acc Id:

ENSRNOP00000037915 ⟸ ENSRNOT00000034487

RefSeq Acc Id:	XP_063140357 ⟸ XM_063284287
- Peptide Label:	isoform X1
- UniProtKB:	Q76MT4 (UniProtKB/Swiss-Prot), A6HQL9 (UniProtKB/TrEMBL)

Protein Domains

ESF1 RRM NUC153

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q76MT4-F1-model_v2	AlphaFold	Q76MT4	1-842	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692470

Promoter ID:

EPDNEW_R2995

Type:

multiple initiation site

Name:

Esf1_1

Description:

ESF1 nucleolar pre-rRNA processing protein homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	133,232,305 - 133,232,365	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306067	AgrOrtholog
BioCyc Gene	G2FUF-47663	BioCyc
Ensembl Genes	ENSRNOG00000004777	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000034487	ENTREZGENE
	ENSRNOT00000034487.6	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5599382	IMAGE-MGC_LOAD
InterPro	Esf1	UniProtKB/Swiss-Prot
	NUC153	UniProtKB/Swiss-Prot
	RRM_ESF1	UniProtKB/Swiss-Prot
KEGG Report	rno:366203	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124757	IMAGE-MGC_LOAD
NCBI Gene	366203	ENTREZGENE
PANTHER	ESF1 HOMOLOG	UniProtKB/Swiss-Prot
	PTHR12202	UniProtKB/Swiss-Prot
Pfam	NUC153	UniProtKB/Swiss-Prot
	RRM_ESF1	UniProtKB/Swiss-Prot
PhenoGen	Esf1	PhenoGen
RatGTEx	ENSRNOG00000004777	RatGTEx
UniProt	A6HQL9	ENTREZGENE, UniProtKB/TrEMBL
	ESF1_RAT	UniProtKB/Swiss-Prot
	Q3KRE7_RAT	UniProtKB/TrEMBL
	Q76MT4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Esf1	ESF1 nucleolar pre-rRNA processing protein	Esf1	ESF1 nucleolar pre-rRNA processing protein homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-09	Esf1	ESF1 nucleolar pre-rRNA processing protein homolog	Esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	RGD1306067	similar to chromosome 20 open reading frame 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306067	similar to chromosome 20 open reading frame 6	RGD1306067_predicted	similar to chromosome 20 open reading frame 6 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306067_predicted	similar to chromosome 20 open reading frame 6 (predicted)	LOC366203_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC366203_predicted	similar to chromosome 20 open reading frame 6 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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