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Gene: Dennd6a (DENN domain containing 6A) Rattus norvegicus

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Symbol:

Dennd6a

Name:

DENN domain containing 6A

RGD ID:

1306064

Description:

Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in positive regulation of cell-cell adhesion mediated by cadherin. Predicted to be located in cytoplasm. Predicted to be active in recycling endosome. Orthologous to human DENND6A (DENN domain containing 6A); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DENN/MADD domain containing 6A; Fam116a; family with sequence similarity 116, member A; hypothetical protein LOC306229; hypothetical protein MGC38041; LOC306229; RGD1306064; similar to RIKEN cDNA A630054L15; uncharacterized protein LOC306229

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DENND6A (DENN domain containing 6A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Dennd6a (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dennd6a (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DENND6A (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DENND6A (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dennd6a (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DENND6A (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DENND6A (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dennd6a (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dennd6a (DENN domain containing 6A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DENND6B (DENN domain containing 6B)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Dennd6a (DENN domain containing 6A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dennd6a (DENN domain containing 6A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DENND6A (DENN domain containing 6A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dennd6aa (DENN/MADD domain containing 6Aa)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F53H1.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3309	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dennd6a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dennd6a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	1,843,803 - 1,892,165 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	1,843,752 - 1,892,163 (+)	Ensembl				GRCr8
mRatBN7.2	16	1,837,019 - 1,885,420 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	1,837,059 - 1,885,420 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	1,843,688 - 1,892,050 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	2,989,384 - 3,037,744 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	1,850,139 - 1,898,501 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	2,278,701 - 2,327,062 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	2,278,701 - 2,327,062 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	2,297,248 - 2,302,165 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	16	2,252,208 - 2,289,395 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	1,896,071 - 1,944,337 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	1,806,443 - 1,854,294 (+)	NCBI		Celera
RGSC_v3.1	16	1,876,717 - 1,944,327 (+)	NCBI
Cytogenetic Map	16	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin M1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

endosulfan (EXP)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

glafenine (EXP)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

paracetamol (EXP)

potassium chromate (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of cell-cell adhesion mediated by cadherin (IBA,IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

recycling endosome (IBA,IEA,ISO)

Molecular Function

guanyl-nucleotide exchange factor activity (IBA,IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22595670

Genomics

Comparative Map Data

Dennd6a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	1,843,803 - 1,892,165 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	1,843,752 - 1,892,163 (+)	Ensembl				GRCr8
mRatBN7.2	16	1,837,019 - 1,885,420 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	1,837,059 - 1,885,420 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	1,843,688 - 1,892,050 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	2,989,384 - 3,037,744 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	1,850,139 - 1,898,501 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	2,278,701 - 2,327,062 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	2,278,701 - 2,327,062 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	2,297,248 - 2,302,165 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	16	2,252,208 - 2,289,395 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	1,896,071 - 1,944,337 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	1,806,443 - 1,854,294 (+)	NCBI		Celera
RGSC_v3.1	16	1,876,717 - 1,944,327 (+)	NCBI
Cytogenetic Map	16	p16	NCBI

DENND6A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	57,625,454 - 57,693,077 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	57,625,454 - 57,693,127 (-)	Ensembl			hg38	GRCh38
GRCh37	3	57,611,181 - 57,678,804 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	57,586,224 - 57,653,844 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	57,624,256 - 57,692,688 (-)	NCBI		Celera
Cytogenetic Map	3	p14.3	NCBI
HuRef	3	57,708,594 - 57,776,280 (-)	NCBI		HuRef
CHM1_1	3	57,561,278 - 57,628,877 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	57,665,829 - 57,733,445 (-)	NCBI		T2T-CHM13v2.0

Dennd6a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	26,295,013 - 26,355,477 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	26,295,011 - 26,355,477 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	26,573,858 - 26,634,322 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	26,573,856 - 26,634,322 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	27,399,036 - 27,451,586 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	25,412,745 - 25,461,593 (+)	NCBI		MGSCv36	mm8
Celera	14	22,823,047 - 22,874,957 (+)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	16.09	NCBI

Dennd6a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	7,327,602 - 7,397,670 (-)	Ensembl
ChiLan1.0	NW_004955430	7,327,602 - 7,396,961 (-)	NCBI	ChiLan1.0	ChiLan1.0

DENND6A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	57,593,496 - 57,665,615 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	57,598,266 - 57,668,504 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	57,558,551 - 57,627,298 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	58,978,866 - 59,046,737 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	58,978,866 - 59,046,737 (-)	Ensembl			panPan2	panpan1.1

DENND6A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	32,780,529 - 32,830,388 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	32,780,579 - 32,830,478 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	32,668,669 - 32,758,618 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	33,013,800 - 33,103,659 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	33,054,003 - 33,103,575 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	32,469,126 - 32,558,931 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	32,827,460 - 32,917,253 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	32,997,818 - 33,087,850 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dennd6a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	174,801,419 - 174,871,721 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	7,939,971 - 8,010,628 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	7,939,992 - 8,010,304 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DENND6A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	39,462,269 - 39,524,080 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	39,456,957 - 39,524,110 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	43,386,676 - 43,444,348 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DENND6A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	18,925,960 - 18,993,689 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	18,924,829 - 18,993,575 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	147,875,453 - 147,945,903 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dennd6a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624821	376,525 - 446,583 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624821	374,615 - 446,656 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dennd6a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	2,384,364 - 2,429,157 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dennd6a
189 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	914
Count of miRNA genes:	315
Interacting mature miRNAs:	424
Transcripts:	ENSRNOT00000016233
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	387123	45387123	Rat
1549842	Bp248	Blood pressure QTL 248		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	387123	45387123	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33425095	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39568015	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39568015	Rat
631524	Bp75	Blood pressure QTL 75		0.05	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	117710	8157035	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
12903955	Kidm69	Kidney mass QTL 69		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	839230	4234212	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26734272	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	1	26734272	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	839086	52786090	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26734272	Rat

Markers in Region

D16Chm46

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,866,481 - 1,866,681 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	2,308,124 - 2,308,323	NCBI	Rnor6.0
Rnor_5.0	16	2,282,304 - 2,282,503	UniSTS	Rnor5.0
RGSC_v3.4	16	1,925,382 - 1,925,581	UniSTS	RGSC3.4
Celera	16	1,835,797 - 1,835,996	UniSTS
Cytogenetic Map	16	p16	UniSTS

BE119258

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,864,224 - 1,864,380 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	2,305,865 - 2,306,020	NCBI	Rnor6.0
Rnor_5.0	16	2,280,045 - 2,280,200	UniSTS	Rnor5.0
RGSC_v3.4	16	1,923,123 - 1,923,278	UniSTS	RGSC3.4
Celera	16	1,833,538 - 1,833,693	UniSTS
RH 3.4 Map	16	16.3	UniSTS
Cytogenetic Map	16	p16	UniSTS

AI235901

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,884,565 - 1,884,677 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	2,326,208 - 2,326,319	NCBI	Rnor6.0
Rnor_5.0	16	2,301,311 - 2,301,422	UniSTS	Rnor5.0
RGSC_v3.4	16	1,943,483 - 1,943,594	UniSTS	RGSC3.4
Celera	16	1,853,440 - 1,853,551	UniSTS
RH 3.4 Map	16	16.3	UniSTS
Cytogenetic Map	16	p16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005494603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016233 ⟹ ENSRNOP00000016233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	1,843,783 - 1,892,163 (+)	Ensembl
mRatBN7.2 Ensembl	16	1,837,059 - 1,885,420 (+)	Ensembl
Rnor_6.0 Ensembl	16	2,278,701 - 2,327,062 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107147 ⟹ ENSRNOP00000086433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	1,854,541 - 1,892,163 (+)	Ensembl
mRatBN7.2 Ensembl	16	1,837,059 - 1,885,420 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000142051 ⟹ ENSRNOP00000107624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	1,843,796 - 1,892,163 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143005 ⟹ ENSRNOP00000112522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	1,843,752 - 1,892,161 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156954 ⟹ ENSRNOP00000110826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	1,854,541 - 1,892,163 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164322 ⟹ ENSRNOP00000106780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	1,843,784 - 1,892,162 (+)	Ensembl

RefSeq Acc Id:

NM_001134467 ⟹ NP_001127939

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	1,843,803 - 1,892,165 (+)	NCBI
mRatBN7.2	16	1,837,059 - 1,885,420 (+)	NCBI
Rnor_6.0	16	2,278,701 - 2,327,062 (+)	NCBI
Rnor_5.0	16	2,252,208 - 2,289,395 (+)	NCBI
Rnor_5.0	16	2,297,248 - 2,302,165 (+)	NCBI
RGSC_v3.4	16	1,896,071 - 1,944,337 (+)	RGD
Celera	16	1,806,443 - 1,854,294 (+)	RGD

Sequence:

show sequence

GCGGCGCGGTCCGCGGCGGAGGCGGCTCGAGCGGACAGGGGGTGGCGGATGGCTCTGCGGGACC
AGGCGGTCTTCGGACCCGGTTCCCGCGGGTCGTTGGACGAGGCTGGGGCCGAGGGGCGCGAGGC
GGCGGCCCTTGCGGCGGCGGGAGTCGCGCTGGAGGACGATGAGGAGGACGATGGCCGCCGGGGC
CTGCTGCGCTGGGACGGCTTCTCAGCCTGGCTACACTGCGTGTGTGTGGTGGGCTTCGACCTGG
AGCTGGGCCAGGCGGTGGAGGTAATTTATCCTCAGCATTGCAAACTCACTGATAAAGAAAAAAC
GAACATTTGCTATTTGTCCTTTCCAGACTCAAATTCAGGTTGTCTAGGAGACACCCAGTTTTGT
TTTAGATTCCGCCAATCTTCTGGGAGGAGGGTCTCACTGCACTGTCTTCTTGATGAATTTGACA
AAGATTTACCAGTTTACTTAAAGAAAGATCCTGCATACTTTTATGGATATGTGTATTTTCGACA
AGTTCGAGATAAAACTCTTAAAAGAGGCTACTTCCAGAAGTCATTGGTTTTGATCAGCAAACTA
CCTTATATTCATTTTTTTCACACCGTACTCAAACAGATAGCACCAGAGTATTTTGAAAAAAATG
AACCTTATTTGGAAGCAGCCTGCAATGACGTTGACCGATGGCCGGCCCCAGTGCCAGGGAAAAC
ATTGCATCTGCCTATCATGGGACTAGTAATGAAGGTGAGGATTCCCACGTGTCATGACAAGCCT
GGGACTACGCAGTTAACTCAGCAGGCAGATACACACACATCTATTATTTTGCCTACTGTTCATG
AGGTGGATCTTTTCAGGTGTTTTTGCCCAGTTTTTCTTCACAGCCAGATGCTTTGGGAGTTGGT
GCTATTGGGAGAGCCCCTTGTGGTCATGGCACCGTCGCCGTCAGAGTCTTCAGAAACTGTACTG
GCCCTCGTTAACTGTATTTCTCCATTAAAGTACTTTAGTGATTTTCGACCTTACTTCACAATTC
ATGATAGTGAATTCAAAGAATATACTACCCGTACTCAAGCTCCGCCCTCAGTCATCTTAGGAGT
AACCAACCCCTTTTTTGCTAAAACACTACAGCACTGGCCACACATTATTCGAATAGGAGATCTT
AAACCTGCAGGTGAAATTCCTAAGCAAGTTAAAGTGAAAAAACTGAAGAACCTAAAAACTCTGG
ATTCTAAACCTGGAGTTTATACTTCTTACAAGCCATATCTAAACAGAGATGAGGAGATCATTAA
ACAACTCCAGAAGGGTGTACAGCAGAAACGTCCTTCGGAGGCCCAAAGTGTTATTCTCCGGCGC
TATTTTTTGGAACTGACACAAAGTTTCATCATTCCATTAGAAAGATATGTGGCTAGCTTGATGC
CTTTGCAGAAGAGTATTTCTCCGTGGAAGAGTCCACCCCAGCTAAGGCAGTTCCTTCCAGAAGA
ATTTATGAAAACGCTTGAGAAAACGGGGCCTCAGCTCACGTCTGGAATAAAGGGCGATTGGATC
GGGCTTTACCGGCAGTTTCTAAAGTCTCCAAATTTTGATGGCTGGTTCAAGACCCGGAGAAAAG
AAATGACCCACAAATTGGAGGCCCTTCATCTAGAAGCTCTTTGTGAAGAGGACCTCCTTCTCTG
GATCCAGAAACACACAGAAGTAGAAACAGTGGACCTTGTATTGAAGCTGAAAAATAAGCTGTTG
CAGGCTGACCGAGAGAATTTACCTGTGAAACCTGACACTGTGGAGAAGTTACGGACACATATAG
ATGCGATTATCCTCGCATTACCGGAGGATCTGCAAGGCATACTGCTCAAGACTGGCATGACATG
ATACTTAGCAGATTCTCCTGCCAGAAAGGACTGTGAACCATGAAGCATACTGACATTTTATCTA
GACGCACACAGGAGCTGTCTTGGTGGCAGGAGCACGGAAACCGGCAGCAGTTGCGAGATACAGG
TGGAAGGACTGAGCATATAAACAGACATTTTTAGTGCATTCTGTGGTGGTTCCACAATACTGGA
ATACCGAACGGCGTTTCCACGTCTGTAATCATGTTCTAAAGTGCTCTTAGGAGAGACCTGTGGG
GCCATCCATGTAAGGCCTCCGAACTGCAGTGCCGGCACTGCAGATATTTTTTTAATTGGTGCTG
CTTTGCCCAATCAATGTTGAAACTCAGGGGAATATAAAAATAATGTTCACACTGGCTGTCTTCT
TAAGAAGGAAAACTGAACTTCCGAACTGTAGTTAGATATAACTGGGGCTTATGTAGTGCCTTCC
ATTGTCCTATATGTTTCACAGGGTCCCGCTGCTAAGTTTAAAGCTTTTTCTTTTTTAATTATGA
TAACTTTAAAGGCATTATATCAAGTAATCATTTGCTTAAAAGTGTTTCTCGTTGCCCCTTGTGT
TTATTGACTGGTATTTTAAATTATCATGTGGTTCTCATGTCACAACTCTACCATTTTCACAAGT
AAGACTTAGGAGTTTCTCCAAAGGAAGGAGGCATATGTAGTTCTGCTTATGGGAGAGTTGATTT
CTCCCTTCCCCTTTCCTCCCTGGGCCTGTGTACCCTAATGAGCACGAATGTCTTTTGAAGACAT
TCTTACTATGAACACCATAGTCAGTTGCTTTTTAAAATAGTTATTCTTATGTCAAAGTACCCAT
AAGCCATTCATGGAATAATTATTTGAGAATTTTACACATTATATGTTGGGTGACACTATTTCCC
CTAAATGGATGATTTTCAGAAGGCTTTTCCTGATGTTGTTTGACATGGGACCTATTGTGTAAAT
CAGCGTTATACATTGGTTTGTTTGTTTTCATTTTGTTTGTACTACCTTGCCAAAAGCAGACTGA
GATAGTTTGGTTTGTGTTTAGATGGGAGTGTATGCAGAAGCCACTGTTCAGATAGGTACACATG
AAGTAGCACAGATGTAAATAGCTGTGACTTCAGTCCCCTCCCTTCCAAACAGCCAAACCTAGGT
GTATGTGTCTGTCACACTGTGACTTCAGAAGCCACCTCTTGTTCTCCGTTGATGTTATTTCTAA
GGGCATTCCTGGTCTAGGAAGGTTTCTCTGTGCTTGTGACTGTGGTGTCATATCCAAGTGTGCC
CTTAGTCATGGATACGGTCTCTTGAAGCATACCACTGTCCTAGGAAGAATATGGCATTTGGATG
AAATCATTTGTCTGAATTGAATGGGTTATTTTGTGAAACAGTACTGACCTTTCAGAAAAGGGGC
AACTACTTTTATATGCTAAAGTACTTCATAACTTTCTGGGAAACTTTATTTAGGTAGAAATGGC
CATCTTATTATTTTTCAAATAAATGTATTTTAATAATTTCACAATTTATATGCAGTTTGTGACA
TGAATATGGAAATCATTAGTGTTATATCAAGGATTTTTGAAATATATTTCTACAGGATATATCA
TTTGAAGTTTATTTTGCACACCTAAAGAAAAACATAAAATATCAATTAGCATGAAAATGCTGTC
TTTACATTTACCACATATAACAGAAACTCAACACATGTTGAAAACGAAATCATATTCTCCTACT
TTATCTCTTAATTTCAAATTATGTCTGTGCAAGAATAGCTTAAGGTTGCATTGGAAACCCAAGG
AAGACTGAACAGTAACTTAAATTTTTATGTGATTTTCAGAATTGTCTCTTTCTCTGTTTTTAAA
GAGTTTAGTATTCAAACCCTGCCGTTTAATGTGTTGTCTCCACCAGCATCAGAAGGATTCAGTG
CTTTTAGGGTGTTATGTAATGCCTAGTGCCTTCTATTTACAGTGGAAAAGAGGTTTTGTGGAGG
CATTTATGGTCATTACCAAAAGGTGAATTAAAGGCCTTGGATTTTAAAACGTGTA

hide sequence

RefSeq Acc Id:

XM_017600075 ⟹ XP_017455564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	1,854,541 - 1,892,163 (+)	NCBI
mRatBN7.2	16	1,847,797 - 1,885,418 (+)	NCBI
Rnor_6.0	16	2,289,443 - 2,327,062 (+)	NCBI

Sequence:

show sequence

TTTATCCTCAGCATTGCAAACTCACTGATAAAGAAAAAACGAACATTTGCTATTTGTCCTTTCC
AGACTCAAATTCAGTCATTGGTTTTGATCAGCAAACTACCTTATATTCATTTTTTTCACACCGT
ACTCAAACAGATAGCACCAGAGTATTTTGAAAAAAATGAACCTTATTTGGAAGCAGCCTGCAAT
GACGTTGACCGATGGCCGGCCCCAGTGCCAGGGAAAACATTGCATCTGCCTATCATGGGACTAG
TAATGAAGGTGAGGATTCCCACGTGTCATGACAAGCCTGGGACTACGCAGTTAACTCAGCAGGC
AGATACACACACATCTATTATTTTGCCTACTGTTCATGAGGTGGATCTTTTCAGGTGTTTTTGC
CCAGTTTTTCTTCACAGCCAGATGCTTTGGGAGTTGGTGCTATTGGGAGAGCCCCTTGTGGTCA
TGGCACCGTCGCCGTCAGAGTCTTCAGAAACTGTACTGGCCCTCGTTAACTGTATTTCTCCATT
AAAGTACTTTAGTGATTTTCGACCTTACTTCACAATTCATGATAGTGAATTCAAAGAATATACT
ACCCGTACTCAAGCTCCGCCCTCAGTCATCTTAGGAGTAACCAACCCCTTTTTTGCTAAAACAC
TACAGCACTGGCCACACATTATTCGAATAGGAGATCTTAAACCTGCAGGTGAAATTCCTAAGCA
AGTTAAAGTGAAAAAACTGAAGAACCTAAAAACTCTGGATTCTAAACCTGGAGTTTATACTTCT
TACAAGCCATATCTAAACAGAGATGAGGAGATCATTAAACAACTCCAGAAGGGTGTACAGCAGA
AACGTCCTTCGGAGGCCCAAAGTGTTATTCTCCGGCGCTATTTTTTGGAACTGACACAAAGTTT
CATCATTCCATTAGAAAGATATGTGGCTAGCTTGATGCCTTTGCAGAAGAGTATTTCTCCGTGG
AAGAGTCCACCCCAGCTAAGGCAGTTCCTTCCAGAAGAATTTATGAAAACGCTTGAGAAAACGG
GGCCTCAGCTCACGTCTGGAATAAAGGGCGATTGGATCGGGCTTTACCGGCAGTTTCTAAAGTC
TCCAAATTTTGATGGCTGGTTCAAGACCCGGAGAAAAGAAATGACCCACAAATTGGAGGCCCTT
CATCTAGAAGCTCTTTGTGAAGAGGACCTCCTTCTCTGGATCCAGAAACACACAGAAGTAGAAA
CAGTGGACCTTGTATTGAAGCTGAAAAATAAGCTGTTGCAGGCTGACCGAGAGAATTTACCTGT
GAAACCTGACACTGTGGAGAAGTTACGGACACATATAGATGCGATTATCCTCGCATTACCGGAG
GATCTGCAAGGCATACTGCTCAAGACTGGCATGACATGATACTTAGCAGATTCTCCTGCCAGAA
AGGACTGTGAACCATGAAGCATACTGACATTTTATCTAGACGCACACAGGAGCTGTCTTGGTGG
CAGGAGCACGGAAACCGGCAGCAGTTGCGAGATACAGGTGGAAGGACTGAGCATATAAACAGAC
ATTTTTAGTGCATTCTGTGGTGGTTCCACAATACTGGAATACCGAACGGCGTTTCCACGTCTGT
AATCATGTTCTAAAGTGCTCTTAGGAGAGACCTGTGGGGCCATCCATGTAAGGCCTCCGAACTG
CAGTGCCGGCACTGCAGATATTTTTTTAATTGGTGCTGCTTTGCCCAATCAATGTTGAAACTCA
GGGGAATATAAAAATAATGTTCACACTGGCTGTCTTCTTAAGAAGGAAAACTGAACTTCCGAAC
TGTAGTTAGATATAACTGGGGCTTATGTAGTGCCTTCCATTGTCCTATATGTTTCACAGGGTCC
CGCTGCTAAGTTTAAAGCTTTTTCTTTTTTAATTATGATAACTTTAAAGGCATTATATCAAGTA
ATCATTTGCTTAAAAGTGTTTCTCGTTGCCCCTTGTGTTTATTGACTGGTATTTTAAATTATCA
TGTGGTTCTCATGTCACAACTCTACCATTTTCACAAGTAAGACTTAGGAGTTTCTCCAAAGGAA
GGAGGCATATGTAGTTCTGCTTATGGGAGAGTTGATTTCTCCCTTCCCCTTTCCTCCCTGGGCC
TGTGTACCCTAATGAGCACGAATGTCTTTTGAAGACATTCTTACTATGAACACCATAGTCAGTT
GCTTTTTAAAATAGTTATTCTTATGTCAAAGTACCCATAAGCCATTCATGGAATAATTATTTGA
GAATTTTACACATTATATGTTGGGTGACACTATTTCCCCTAAATGGATGATTTTCAGAAGGCTT
TTCCTGATGTTGTTTGACATGGGACCTATTGTGTAAATCAGCGTTATACATTGGTTTGTTTGTT
TTCATTTTGTTTGTACTACCTTGCCAAAAGCAGACTGAGATAGTTTGGTTTGTGTTTAGATGGG
AGTGTATGCAGAAGCCACTGTTCAGATAGGTACACATGAAGTAGCACAGATGTAAATAGCTGTG
ACTTCAGTCCCCTCCCTTCCAAACAGCCAAACCTAGGTGTATGTGTCTGTCACACTGTGACTTC
AGAAGCCACCTCTTGTTCTCCGTTGATGTTATTTCTAAGGGCATTCCTGGTCTAGGAAGGTTTC
TCTGTGCTTGTGACTGTGGTGTCATATCCAAGTGTGCCCTTAGTCATGGATACGGTCTCTTGAA
GCATACCACTGTCCTAGGAAGAATATGGCATTTGGATGAAATCATTTGTCTGAATTGAATGGGT
TATTTTGTGAAACAGTACTGACCTTTCAGAAAAGGGGCAACTACTTTTATATGCTAAAGTACTT
CATAACTTTCTGGGAAACTTTATTTAGGTAGAAATGGCCATCTTATTATTTTTCAAATAAATGT
ATTTTAATAATTTCACAATTTATATGCAGTTTGTGACATGAATATGGAAATCATTAGTGTTATA
TCAAGGATTTTTGAAATATATTTCTACAGGATATATCATTTGAAGTTTATTTTGCACACCTAAA
GAAAAACATAAAATATCAATTAGCATGAAAATGCTGTCTTTACATTTACCACATATAACAGAAA
CTCAACACATGTTGAAAACGAAATCATATTCTCCTACTTTATCTCTTAATTTCAAATTATGTCT
GTGCAAGAATAGCTTAAGGTTGCATTGGAAACCCAAGGAAGACTGAACAGTAACTTAAATTTTT
ATGTGATTTTCAGAATTGTCTCTTTCTCTGTTTTTAAAGAGTTTAGTATTCAAACCCTGCCGTT
TAATGTGTTGTCTCCACCAGCATCAGAAGGATTCAGTGCTTTTAGGGTGTTATGTAATGCCTAG
TGCCTTCTATTTACAGTGGAAAAGAGGTTTTGTGGAGGCATTTATGGTCATTACCAAAAGGTGA
ATTAAAGGCCTTGGATTTTAAAACGTGTA

hide sequence

RefSeq Acc Id:

XM_039094441 ⟹ XP_038950369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	1,843,851 - 1,892,163 (+)	NCBI
mRatBN7.2	16	1,837,019 - 1,885,418 (+)	NCBI

RefSeq Acc Id:

XR_005494603

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	1,843,851 - 1,887,916 (+)	NCBI
mRatBN7.2	16	1,837,019 - 1,881,171 (+)	NCBI

RefSeq Acc Id:

XR_010058291

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	1,843,851 - 1,890,135 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001127939	(Get FASTA)	NCBI Sequence Viewer
	XP_017455564	(Get FASTA)	NCBI Sequence Viewer
	XP_038950369	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016233
	ENSRNOP00000016233.5
	ENSRNOP00000086433.2
	ENSRNOP00000106780.1
	ENSRNOP00000107624
	ENSRNOP00000107624.1
	ENSRNOP00000110826
	ENSRNOP00000110826.1
	ENSRNOP00000112522.1

RefSeq Acc Id:

NP_001127939 ⟸ NM_001134467

- UniProtKB:

D4A544 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALRDQAVFGPGSRGSLDEAGAEGREAAALAAAGVALEDDEEDDGRRGLLRWDGFSAWLHCVCV
VGFDLELGQAVEVIYPQHCKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCL
LDEFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPE
YFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGLVMKVRIPTCHDKPGTTQLTQQADTHTSII
LPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFR
PYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPAGEIPKQVKVKKLK
NLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERY
VASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSGIKGDWIGLYRQFLKSPNFDGWF
KTRRKEMTHKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQADRENLPVKPDTVEK
LRTHIDAIILALPEDLQGILLKTGMT

hide sequence

RefSeq Acc Id:

XP_017455564 ⟸ XM_017600075

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGLVMKVRIPTCHDKPGTTQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEP
LVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFF
AKTLQHWPHIIRIGDLKPAGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKG
VQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTL
EKTGPQLTSGIKGDWIGLYRQFLKSPNFDGWFKTRRKEMTHKLEALHLEALCEEDLLLWIQKHT
EVETVDLVLKLKNKLLQADRENLPVKPDTVEKLRTHIDAIILALPEDLQGILLKTGMT

hide sequence

Ensembl Acc Id:

ENSRNOP00000016233 ⟸ ENSRNOT00000016233

RefSeq Acc Id:	XP_038950369 ⟸ XM_039094441
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000086433 ⟸ ENSRNOT00000107147

Ensembl Acc Id:

ENSRNOP00000106780 ⟸ ENSRNOT00000164322

Ensembl Acc Id:

ENSRNOP00000110826 ⟸ ENSRNOT00000156954

Ensembl Acc Id:

ENSRNOP00000112522 ⟸ ENSRNOT00000143005

Ensembl Acc Id:

ENSRNOP00000107624 ⟸ ENSRNOT00000142051

Protein Domains

uDENN

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A544-F1-model_v2	AlphaFold	D4A544	1-602	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699894

Promoter ID:

EPDNEW_R10418

Type:

initiation region

Name:

Dennd6a_1

Description:

DENN domain containing 6A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	2,278,680 - 2,278,740	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306064	AgrOrtholog
BioCyc Gene	G2FUF-12253	BioCyc
Ensembl Genes	ENSRNOG00000011636	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016233	ENTREZGENE
	ENSRNOT00000016233.7	UniProtKB/TrEMBL
	ENSRNOT00000107147.2	UniProtKB/TrEMBL
	ENSRNOT00000142051	ENTREZGENE
	ENSRNOT00000142051.1	UniProtKB/TrEMBL
	ENSRNOT00000143005.1	UniProtKB/TrEMBL
	ENSRNOT00000156954	ENTREZGENE
	ENSRNOT00000156954.1	UniProtKB/TrEMBL
	ENSRNOT00000164322.1	UniProtKB/TrEMBL
InterPro	ABL9/DENND6_dom	UniProtKB/TrEMBL
	Tripartite_DENN	UniProtKB/TrEMBL
	Uncharacterised_FAM116	UniProtKB/TrEMBL
KEGG Report	rno:306229	UniProtKB/TrEMBL
NCBI Gene	306229	ENTREZGENE
PANTHER	DUF1630	UniProtKB/TrEMBL
	PROTEIN DENND6A	UniProtKB/TrEMBL
Pfam	Avl9	UniProtKB/TrEMBL
PhenoGen	Dennd6a	PhenoGen
PROSITE	DENN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011636	RatGTEx
UniProt	A0A8I6A279_RAT	UniProtKB/TrEMBL
	A0ABK0L921_RAT	UniProtKB/TrEMBL
	A0ABK0LAL2_RAT	UniProtKB/TrEMBL
	A0ABK0LNB1_RAT	UniProtKB/TrEMBL
	A0ABK0LYR9_RAT	UniProtKB/TrEMBL
	D4A544	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Dennd6a	DENN domain containing 6A	Dennd6a	DENN/MADD domain containing 6A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-11	Dennd6a	DENN/MADD domain containing 6A	Fam116a	family with sequence similarity 116, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam116a	family with sequence similarity 116, member A	RGD1306064_predicted	similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1306064_predicted	similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted)	LOC306229_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC306229_predicted	similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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