Skic3 (SKI3 subunit of superkiller complex) - Rat Genome Database

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Gene: Skic3 (SKI3 subunit of superkiller complex) Rattus norvegicus
Analyze
Symbol: Skic3
Name: SKI3 subunit of superkiller complex
RGD ID: 1306062
Description: Predicted to be involved in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay and rescue of stalled ribosome. Predicted to be located in cytoplasm; euchromatin; and nucleus. Predicted to be part of Ski complex. Human ortholog(s) of this gene implicated in trichohepatoenteric syndrome 1. Orthologous to human SKIC3 (SKI3 subunit of superkiller complex); PARTICIPATES IN RNA degradation pathway; INTERACTS WITH acrylamide; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC294595; RGD1306062; similar to KIAA0372 gene product; superkiller complex protein 3; tetratricopeptide repeat domain 37; tetratricopeptide repeat protein 37; Ttc37
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr827,363,417 - 7,526,351 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl27,363,535 - 7,483,496 (+)EnsemblGRCr8
mRatBN7.225,631,544 - 5,783,643 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl25,631,635 - 5,751,626 (+)EnsemblmRatBN7.2
Rnor_6.022,891,265 - 3,037,602 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl22,903,492 - 3,004,553 (+)Ensemblrn6Rnor6.0
Rnor_5.022,892,017 - 3,004,123 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.423,196,865 - 3,307,075 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera22,100,726 - 2,246,799 (+)NCBICelera
RGSC_v3.123,213,550 - 3,326,238 (+)NCBI
Cytogenetic Map2q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
euchromatin  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)
Ski complex  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16024656   PMID:31505169   PMID:31904090  


Genomics

Comparative Map Data
Skic3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr827,363,417 - 7,526,351 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl27,363,535 - 7,483,496 (+)EnsemblGRCr8
mRatBN7.225,631,544 - 5,783,643 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl25,631,635 - 5,751,626 (+)EnsemblmRatBN7.2
Rnor_6.022,891,265 - 3,037,602 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl22,903,492 - 3,004,553 (+)Ensemblrn6Rnor6.0
Rnor_5.022,892,017 - 3,004,123 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.423,196,865 - 3,307,075 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera22,100,726 - 2,246,799 (+)NCBICelera
RGSC_v3.123,213,550 - 3,326,238 (+)NCBI
Cytogenetic Map2q11NCBI
SKIC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38595,463,894 - 95,554,977 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl595,461,755 - 95,555,050 (-)Ensemblhg38GRCh38
GRCh37594,799,598 - 94,890,681 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36594,825,868 - 94,916,438 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34594,825,879 - 94,916,438NCBI
Celera590,678,012 - 90,769,146 (-)NCBICelera
Cytogenetic Map5q15NCBI
HuRef589,989,711 - 90,080,910 (-)NCBIHuRef
CHM1_1594,232,235 - 94,323,386 (-)NCBICHM1_1
T2T-CHM13v2.0595,964,834 - 96,055,916 (-)NCBIT2T-CHM13v2.0
Skic3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391376,246,837 - 76,338,437 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1376,246,853 - 76,338,435 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381376,098,705 - 76,190,318 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1376,098,734 - 76,190,316 (+)Ensemblmm10GRCm38
MGSCv371376,236,182 - 76,325,431 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361376,564,736 - 76,653,985 (+)NCBIMGSCv36mm8
Celera1378,412,863 - 78,506,206 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.95NCBI
Skic3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541816,989,400 - 17,069,441 (+)Ensembl
ChiLan1.0NW_00495541816,989,400 - 17,068,479 (+)NCBIChiLan1.0ChiLan1.0
SKIC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2419,824,148 - 19,921,976 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1517,977,761 - 18,076,506 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0519,794,151 - 19,892,000 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1519,939,324 - 20,036,558 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl519,939,324 - 20,036,558 (+)EnsemblpanPan2panpan1.1
SKIC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1314,027,735 - 14,108,224 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl314,034,925 - 14,103,888 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha315,366,598 - 15,446,810 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0313,907,895 - 13,988,079 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl313,907,986 - 13,988,208 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1313,870,671 - 13,950,867 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0313,868,147 - 13,948,573 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0314,067,659 - 14,147,873 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Skic3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213169,601,137 - 169,702,679 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365237,786,649 - 7,888,341 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365237,786,629 - 7,885,220 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SKIC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2102,079,685 - 102,163,938 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12102,079,675 - 102,164,020 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22105,833,573 - 105,861,068 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SKIC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1489,346,960 - 89,438,260 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl489,344,526 - 89,430,070 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604937,992,141 - 38,083,255 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Skic3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474314,110,991 - 14,198,267 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474314,111,237 - 14,197,726 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Skic3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13220,962,870 - 221,071,477 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Skic3
775 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:120
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000062017, ENSRNOT00000074935
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat

Markers in Region
BE110197  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.225,750,639 - 5,750,807 (+)MAPPERmRatBN7.2
Rnor_6.023,004,601 - 3,004,768NCBIRnor6.0
Rnor_5.023,002,826 - 3,002,993UniSTSRnor5.0
RGSC_v3.423,306,863 - 3,307,030UniSTSRGSC3.4
Celera22,213,804 - 2,213,971UniSTS
Cytogenetic Map2q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001427073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001059136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_226606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000062017   ⟹   ENSRNOP00000058722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl27,370,710 - 7,483,496 (+)Ensembl
mRatBN7.2 Ensembl25,631,635 - 5,751,626 (+)Ensembl
Rnor_6.0 Ensembl22,903,492 - 3,004,553 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129988   ⟹   ENSRNOP00000110267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl27,363,535 - 7,482,671 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142593   ⟹   ENSRNOP00000101343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl27,370,710 - 7,482,671 (+)Ensembl
RefSeq Acc Id: NM_001427072   ⟹   NP_001414001
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,509 - 7,483,471 (+)NCBI
RefSeq Acc Id: NM_001427073   ⟹   NP_001414002
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,509 - 7,482,709 (+)NCBI
RefSeq Acc Id: XM_063281447   ⟹   XP_063137517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,417 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281448   ⟹   XP_063137518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,417 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281449   ⟹   XP_063137519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,417 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281450   ⟹   XP_063137520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,417 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281451   ⟹   XP_063137521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,442 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281452   ⟹   XP_063137522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,546 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281453   ⟹   XP_063137523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,565 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281454   ⟹   XP_063137524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,560 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281455   ⟹   XP_063137525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,417 - 7,526,351 (+)NCBI
RefSeq Acc Id: XM_063281456   ⟹   XP_063137526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,417 - 7,483,476 (+)NCBI
RefSeq Acc Id: XM_063281457   ⟹   XP_063137527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr827,363,417 - 7,483,476 (+)NCBI
Ensembl Acc Id: ENSRNOP00000058722   ⟸   ENSRNOT00000062017
RefSeq Acc Id: XP_063137525   ⟸   XM_063281455
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137519   ⟸   XM_063281449
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137527   ⟸   XM_063281457
- Peptide Label: isoform X3
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137520   ⟸   XM_063281450
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137517   ⟸   XM_063281447
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137518   ⟸   XM_063281448
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137526   ⟸   XM_063281456
- Peptide Label: isoform X2
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137521   ⟸   XM_063281451
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414001   ⟸   NM_001427072
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414002   ⟸   NM_001427073
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137522   ⟸   XM_063281452
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137524   ⟸   XM_063281454
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137523   ⟸   XM_063281453
- Peptide Label: isoform X1
- UniProtKB: D3ZL50 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101343   ⟸   ENSRNOT00000142593
Ensembl Acc Id: ENSRNOP00000110267   ⟸   ENSRNOT00000129988

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZL50-F1-model_v2 AlphaFold D3ZL50 1-1563 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306062 AgrOrtholog
BioCyc Gene G2FUF-55082 BioCyc
Ensembl Genes ENSRNOG00000040297 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000062017 ENTREZGENE
  ENSRNOT00000062017.7 UniProtKB/TrEMBL
  ENSRNOT00000129988 ENTREZGENE
  ENSRNOT00000129988.1 UniProtKB/TrEMBL
  ENSRNOT00000142593 ENTREZGENE
  ENSRNOT00000142593.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro Ski3/TTC37 UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene 294595 ENTREZGENE
PANTHER PTHR15704 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 37 UniProtKB/TrEMBL
Pfam TPR_16 UniProtKB/TrEMBL
  TPR_19 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PhenoGen Skic3 PhenoGen
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000040297 RatGTEx
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP HCP-like UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0ABK0L086_RAT UniProtKB/TrEMBL
  A0ABK0LVH0_RAT UniProtKB/TrEMBL
  D3ZL50 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-17 Skic3  SKI3 subunit of superkiller complex  Ttc37  tetratricopeptide repeat domain 37  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Ttc37  tetratricopeptide repeat domain 37  RGD1306062  similar to KIAA0372 gene product   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1306062  similar to KIAA0372 gene product   RGD1306062_predicted  similar to KIAA0372 gene product (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1306062_predicted  similar to KIAA0372 gene product (predicted)  LOC294595_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294595_predicted  similar to KIAA0372 gene product (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL