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Gene: Usp13 (ubiquitin specific peptidase 13) Rattus norvegicus

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Symbol:

Usp13

Name:

ubiquitin specific peptidase 13

RGD ID:

1306044

Description:

Predicted to enable several functions, including BAT3 complex binding activity; peptidase activity; and proteasome binding activity. Predicted to be involved in several processes, including maintenance of unfolded protein; positive regulation of ERAD pathway; and regulation of autophagy. Predicted to act upstream of or within protein deubiquitination and protein stabilization. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Orthologous to human USP13 (ubiquitin specific peptidase 13); INTERACTS WITH (+)-schisandrin B; aconitine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC310306; ubiquitin carboxyl-terminal hydrolase 13; ubiquitin specific protease 13 (isopeptidase T-3); ubiquitin thiolesterase 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP13 (ubiquitin specific peptidase 13)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Usp13 (ubiquitin specific peptidase 13 (isopeptidase T-3))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Usp13 (ubiquitin specific peptidase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	USP13 (ubiquitin specific peptidase 13)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp13 (ubiquitin specific peptidase 13 (isopeptidase T-3))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp13 (ubiquitin specific peptidase 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBP14	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBP14	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Usp5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	usp-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp13	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,502,811 - 117,617,049 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	117,505,122 - 117,630,161 (+)	Ensembl				GRCr8
mRatBN7.2	2	115,576,912 - 115,689,153 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,577,091 - 115,686,222 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	122,183,691 - 122,291,902 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,296,325 - 120,404,549 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,998,508 - 115,106,662 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	119,197,153 - 119,317,507 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,197,239 - 119,317,500 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	138,961,986 - 138,965,318 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	2	138,848,099 - 138,947,514 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	119,006,687 - 119,116,188 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	110,680,308 - 110,788,182 (+)	NCBI		Celera
RGSC_v3.1	2	118,951,691 - 119,057,605 (+)	NCBI
Cytogenetic Map	2	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Arsenic Poisoning (ISO)

skin disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (EXP,ISO)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

DDE (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dimethylarsinic acid (EXP)

diuron (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (ISO)

indometacin (ISO)

isobutanol (ISO)

lead diacetate (ISO)

maneb (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

paraquat (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

raloxifene (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tamibarotene (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

zinc protoporphyrin (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (IEA)

cell population proliferation (ISO)

maintenance of unfolded protein (ISO)

positive regulation of ERAD pathway (ISO)

protein deubiquitination (IEA)

protein K29-linked deubiquitination (ISO)

protein K6-linked deubiquitination (ISO)

protein K63-linked deubiquitination (ISO)

protein stabilization (ISO)

proteolysis (IEA)

regulation of autophagy (ISO)

regulation of DNA-templated transcription (ISO)

regulation of protein stability (IBA)

Cellular Component

cytoplasm (IEA)

cytosol (IBA)

nucleus (IBA)

Molecular Function

BAT3 complex binding (ISO)

cysteine-type deubiquitinase activity (IBA,IEA,ISO)

cysteine-type endopeptidase activity (ISO)

cysteine-type peptidase activity (IEA)

hydrolase activity (IEA)

K48-linked deubiquitinase activity (ISO)

metal ion binding (IEA)

peptidase activity (IEA)

proteasome binding (ISO)

protein binding (ISO)

protein-folding chaperone binding (ISO)

ubiquitin binding (ISO)

ubiquitin protein ligase binding (ISO)

ubiquitin-like protein ligase binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21659512	PMID:21811243	PMID:21962518	PMID:22216260	PMID:22871113	PMID:24424410	PMID:26280536	PMID:36916102

Genomics

Comparative Map Data

Usp13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	117,502,811 - 117,617,049 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	117,505,122 - 117,630,161 (+)	Ensembl				GRCr8
mRatBN7.2	2	115,576,912 - 115,689,153 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	115,577,091 - 115,686,222 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	122,183,691 - 122,291,902 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	120,296,325 - 120,404,549 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	114,998,508 - 115,106,662 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	119,197,153 - 119,317,507 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	119,197,239 - 119,317,500 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	138,961,986 - 138,965,318 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	2	138,848,099 - 138,947,514 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	119,006,687 - 119,116,188 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	110,680,308 - 110,788,182 (+)	NCBI		Celera
RGSC_v3.1	2	118,951,691 - 119,057,605 (+)	NCBI
Cytogenetic Map	2	q24	NCBI

USP13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	179,653,040 - 179,789,401 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	179,653,004 - 179,804,366 (+)	Ensembl			hg38	GRCh38
GRCh37	3	179,370,828 - 179,507,189 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	180,853,635 - 180,984,675 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	180,853,642 - 180,984,683	NCBI
Celera	3	177,801,905 - 177,938,115 (+)	NCBI		Celera
Cytogenetic Map	3	q26.33	NCBI
HuRef	3	176,774,718 - 176,910,711 (+)	NCBI		HuRef
CHM1_1	3	179,334,034 - 179,470,263 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	182,456,880 - 182,592,926 (+)	NCBI		T2T-CHM13v2.0

Usp13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	32,870,432 - 32,992,224 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	32,871,695 - 32,992,220 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	32,816,283 - 32,938,075 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	32,817,546 - 32,938,071 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	32,716,548 - 32,834,179 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	33,009,175 - 33,126,806 (+)	NCBI		MGSCv36	mm8
Celera	3	32,725,174 - 32,842,630 (+)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI
cM Map	3	15.88	NCBI

Usp13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	8,835,549 - 8,919,933 (+)	Ensembl
ChiLan1.0	NW_004955420	8,835,858 - 8,919,837 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	177,521,579 - 177,654,597 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	177,526,444 - 177,656,313 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	176,685,541 - 176,818,360 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	184,856,295 - 184,988,305 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	184,855,388 - 184,983,158 (+)	Ensembl			panPan2	panpan1.1

USP13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	13,059,099 - 13,175,980 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	13,059,092 - 13,171,234 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	17,200,915 - 17,303,172 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	12,957,093 - 13,074,094 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	12,957,085 - 13,069,581 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	13,008,227 - 13,125,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	12,990,863 - 13,107,688 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	13,230,757 - 13,347,935 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Usp13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	109,698,615 - 109,804,274 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936566	3,416,389 - 3,522,133 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936566	3,416,468 - 3,522,127 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	117,700,119 - 117,826,944 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	117,700,080 - 117,826,951 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	126,874,063 - 126,917,846 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	9,619,065 - 9,753,490 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	9,624,300 - 9,753,466 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	18,478,400 - 18,623,806 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	57,384,884 - 57,495,765 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	57,384,878 - 57,495,761 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Usp13
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	122,097,232 - 122,201,045 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Usp13
824 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	591
Count of miRNA genes:	288
Interacting mature miRNAs:	364
Transcripts:	ENSRNOT00000048030
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	105628029	150628029	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	82947902	127947902	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	84056790	132859658	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
2317886	Alcrsp23	Alcohol response QTL 23	2.4	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	95142371	140142371	Rat
2317058	Aia13	Adjuvant induced arthritis QTL 13	2.9		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	2	78269809	123269809	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	100807373	145807373	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	106869825	151869825	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	93602631	145807373	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	82214549	127214549	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
7488933	Bp368	Blood pressure QTL 368		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	104957381	149957381	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	114032149	150226270	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	114440891	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat

Markers in Region

RH143158

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,685,235 - 115,685,398 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	119,314,027 - 119,314,189	NCBI	Rnor6.0
Rnor_5.0	2	138,964,332 - 138,964,494	UniSTS	Rnor5.0
RGSC_v3.4	2	119,115,202 - 119,115,364	UniSTS	RGSC3.4
Celera	2	110,787,196 - 110,787,358	UniSTS
RH 3.4 Map	2	682.6	UniSTS
Cytogenetic Map	2	q25	UniSTS

BE110244

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	115,686,534 - 115,686,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	119,315,326 - 119,315,484	NCBI	Rnor6.0
Rnor_5.0	2	138,965,631 - 138,965,789	UniSTS	Rnor5.0
RGSC_v3.4	2	119,116,501 - 119,116,659	UniSTS	RGSC3.4
Celera	2	110,788,495 - 110,788,653	UniSTS
RH 3.4 Map	2	682.6	UniSTS
Cytogenetic Map	2	q25	UniSTS

RH138856

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	117,611,286 - 117,612,183 (+)	Marker Load Pipeline
mRatBN7.2	2	115,682,953 - 115,683,850 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	119,311,745 - 119,312,641	NCBI	Rnor6.0
Rnor_5.0	2	138,962,050 - 138,962,946	UniSTS	Rnor5.0
Celera	2	110,784,915 - 110,785,811	UniSTS
RH 3.4 Map	2	685.6	UniSTS
Cytogenetic Map	2	q25	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
12	12	67	158	91	90	59	38	59	6	295	138	11	137	78	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU459226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048030 ⟹ ENSRNOP00000039985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	117,505,443 - 117,614,555 (+)	Ensembl
mRatBN7.2 Ensembl	2	115,577,091 - 115,686,222 (+)	Ensembl
Rnor_6.0 Ensembl	2	119,197,239 - 119,317,500 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136756 ⟹ ENSRNOP00000109744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	117,505,122 - 117,630,161 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157346 ⟹ ENSRNOP00000108074

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	117,505,122 - 117,616,120 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161795 ⟹ ENSRNOP00000109039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	117,505,332 - 117,612,207 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167128 ⟹ ENSRNOP00000109476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	117,505,695 - 117,612,207 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000170091 ⟹ ENSRNOP00000105099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	117,505,122 - 117,613,074 (+)	Ensembl

RefSeq Acc Id:

NM_001107665 ⟹ NP_001101135

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,505,443 - 117,614,555 (+)	NCBI
mRatBN7.2	2	115,577,091 - 115,686,222 (+)	NCBI
Rnor_6.0	2	119,197,253 - 119,315,013 (+)	NCBI
Rnor_5.0	2	138,848,099 - 138,947,514 (+)	NCBI
Rnor_5.0	2	138,961,986 - 138,965,318 (+)	NCBI
RGSC_v3.4	2	119,006,687 - 119,116,188 (+)	RGD
Celera	2	110,680,308 - 110,788,182 (+)	RGD

Sequence:

show sequence

CGGCCGCTACGTCCAGGTCCTGCTCTCCCACTGCGCCGCGTTCCTCCCCAGGCCCGCTGCGCTC
AGCGGCCATGCAGCGCCGGGGCGCCCTGTTCAGCGTGCCGGGTGGCGGCGGGAAGATGGCTGCA
GGGGACCTGGGTGAGCTGCTGGTGCCTCACATGCCCACGATCCGCGTGCCTAGGTCAGGGGACC
GCGTCTACAAAAACGAGTGCGCCTTCTCCTACGACTCTCCGAACTCTGAAGGTGGACTCTATGT
ATGCATGAATACATTTTTGGCTTTTGGAAGGGAACACGTTGAAAGACATTTTCGGAAAACTGGA
CAGAGCGTGTACATGCACCTGAAGAGGCACATGCGAGAGAAGGTAAGAGGAGCTTCTGGTGGAG
CTTTACCCAAAAGGAGGAATTCTAAACTATTTTTAGATCTAGATATGGATGACGATTTAAATAG
TGACGATTACGAATATGAAGACGAAGCCAAACTTGTTATATTCCCAGACCACTATGAAATAGCC
CTTCCTAACATTGAGGAGTTACCAGCCCTGGTAACAATTGCTTGCGATGCAGTGCTCAGCTCAA
AGTCCCCGTATAGGAAGCAGGATCCAGACACGTGGGAAAACGAACTGCCAGTATCGAAGTACGC
CAACAACCTCGTGCAACTGGACAACGGGGTCAGGATTCCTCCGAGTGGCTGGAAGTGTGCCCGA
TGTGACCTGCGGGAGAACCTCTGGTTGAATCTGACTGACGGCTCTGTTCTGTGTGGGAAGTGGT
TTTTTGACAGCTCGGGGGGCAATGGCCATGCGCTGGAGCATTACAGAGACATGGGCTATCCTCT
GGCCGTGAAGCTGGGCACCATCACGCCTGATGGAGCAGATGTTTATTCTTTTCAAGAAGAGGGG
CCTGTTTCGGATCCTCATTTGGCCAAACACTTAGCACATTTTGGGATTGACATGCTCCACACAC
AAGGGACAGAGAATGGGTTCCGGGACAATGACATCAAGCTGAGAGTCAGCGAGTGGGAAGTGAT
CCAGGAGTCAGGAACTAAGCTGAAGCCAATGTATGGCCCAGGGTACACGGGCCTGAAGAACCTG
GGCAACAGTTGCTACCTCAGTTCTGTCATGCAGGCCATCTTCAGCATCCCAGAGTTCCAGAGAG
CGTATGTAGGAAACCTCCCAAGGATATTTGACTACTCACCATTAGATCCAACGCAGGACTTCAA
CACACAGATGACTAAGTTGGGACATGGCCTCCTCTCTGGCCAGTACTCGAAGCCTCCAGTGAAA
TCTGAGCTCATTGAACAGGTGATGAAGGAGGAGCACAAGCCTCAGCAGAATGGGATCTCTCCAC
GAATGTTCAAGGCCTTTGTCAGCAAGAGTCACCCAGAATTTTCCTCCAATAGACAGCAGGATGC
CCAGGAGTTTTTCTTGCATTTGGTTAATCTGGTAGAGAGGAATCGCATTGGCTCAGAAAACCCA
AGTGATGTTTTCCGGTTTTTGGTGGAAGAGCGAATTCAATGCTGTCAGACCAGAAAGGTCCGCT
ACACAGAGAGGGTGGACTACCTTATGCAGTTACCAGTGGCAATGGAGGCAGCAACCAACAAAGA
TGAGCTGATTGCCTATGAACTAATGCGGAGGGAAGCAGAAACCAACAGGAGACCCCTTCCAGAG
CTGGTACGAGCCAAGATCCCATTCAGTGCCTGTCTTCAGGCCTTTGCTGAACCAGACAATGTGG
ATGATTTCTGGAGCAGTGCTCTGCAGGCCAAGTCTGCAGGGGTCAAAACATCTCGCTTTGCCTC
ATTCCCTGAATACTTGGTAGTGCAGATAAAGAAGTTCACTTTTGGTCTTGACTGGGTTCCCCGA
AAATTTGATGTTTCTATTGATATGCCAGATCTACTAGATATCAGCCATCTCAGAGCCAGGGGCT
TGCAGCCAGGGGAAGAGGAGCTTCCTGACATCAGCCCCCCCATAGTCATTCCTGATGACTCAAA
AGACCGCTTGATGAACCAGCTGATAGACCCCTCAGACATTGATGAGTCCTCGGTGATGCAACTG
GCTGAGATGGGCTTCCCTTTGGAGGCCTGCAGGAAGGCTGTGTACTTCACGGGGAATACTGGAG
CTGAGGTGGCCTTCAACTGGATTATCGTGCACATGGAAGAGCCTGATTTTGCTGAACCACTGGC
CATACCTGGGTATGGAGGGGCTGGGGCCTCTGCCTTTGGTGCTACTGGACTGGACAACCAACCT
CCTGAGGAAATCGTAGCTATTATCACTGCCATGGGATTCCAGCGCAGTCAGGCGGTACAGGCTC
TACAAGCCACGAACCATAACCTGGAAAGAGCACTGGACTGGATCTTCAGCCACCCTGAGTTTGA
AGAGGACAGTGACTTTGTCATCGAGATGGAGAACAATGCGAATGCAAACATCATGTCTGAGGCC
AAGCCAGAGGGGCCCAGAGTCAAGGATGGGTCTGGAATGTATGAGTTGTTTGCGTTCATCAGTC
ACATGGGAACATCTACGATGAGTGGCCATTATGTTTGCCATATCAAGAAGGAGGGACGATGGGT
GATCTACAATGACCACAAAGTTTGTGCCTCAGAAAGGCCCCCCAAAGACCTGGGATATATGTAC
TTTTACCGCAGGATACCAAGCTAAACCTCACAAGAATTGGCGAGAAGAAGCCATACACCTTTAT
AATTTGCCAAAAAAGAAAAAGAAAAAAAAAAAGAAAAAGGAAAAATAAAGGAAAAAAGTTGGGA
CAGCCGGATGCGGAGGACTACATGGGTATTTACTGCTCCTTTCAAGAGCGTGGTCACTCGACGC
CTTCTGGAGAAGAACTGGGAAGAAAATTCTGTTGGCGGTGATATTCTGTCCTGGGAGATTTTGT
AACTCTTCAGGGAGAGAGTGACGGAAGCAAAGGCATTGTCCACCGGCCCCTCAGAGAGGCACTG
TCTTCCCCTCTCTTCTACTTGGGGGGGTCACCAGTGAGGGCCCCCCACAGTGAGAAAAATGCCC
ACTTTTAAAATTTTTCCACATAGGAAATCAAAACCTGGACTGGCTTTTATTGGTGGCACTTTGT
TTTCATTTCCCACAGTAAGTTCTGTGCACACTAGGACATCTGCAGTGAGAGCTATTTTTAATTT
AAATCACGTCAAACTTTATATTACACTGTATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGACCTTTGTAGTCTGCTGTACGTCTGATGGATTGGTGTTCAAAGGCCAAATAGCTGCTTTTAG
GCATATTTGGAAAAGGCAGGCAAACATCTTTAAAAATTATAACTCAGGAACAATTGTTAAAAGT
GAGTTCCCCACTTGGATTTTAAAGTACAGAGAGCTGAGCTGTGGCCCCTTAAGTGCTGTCTGGC
ATTCATGAGGGTCTGTGTCGTTTGACCTTGATGCCAGGTGCCTAAGTCTTGTCACTGTGCTTTG
CCAAGGGCAGATGGGATCTCTTCCTCAGTAGGGCATTCCCTCAAAGCTTTGTGTTTAGTTTTAG
TTAAATAACTGGCCTCCCAAGCTCCTGCTTACTCCCTGGGATCACGTTAGATGCCTGTGGCTTG
TCTGATTTTTTTGGTCCCTGAACTTCCTTGTGTTTTCACATCTCTGCTTCTCTGGGGCCAGCTT
CACCTCTGCCCTCACTGCCTATCTGCTGTGGCCCATGGTACAACCTGGGGCGCTTTAAGGATGC
AAGCTGCAGAAACACCTCTGTTGCAGCTGCAAAGCCAGGGCCTTCCTTCCTTGTCATTTCCGGG
TCCTAGCTGTGGTCTGAGATCAGAGCAGAGTTGTGGATGTGCAGTGGAGAGGAACCAGAGCTCT
CCATAATTTTCTTACTACTTCTCATCAAATTCCAGCCTCTGGAGTTTCTAGTTCAGGTTATTGA
TCAGATGGGAAAGGATTTATTGCTGTCTGCTTGATGTGTGCTTGCTTGATTGATCTTTGCAGGA
ACTGCAGAAAAAAATGATGAAATAGAAACGGAATGGGCTGAGTAAGCAGAGGCATCGGGTTGGG
ATGGGATGAGTCTGAACAGTCAGAGTTCAAACCCTGGGGCCCTGTCTCAAGGAAGACCCCGTGT
AAGTCCGGGCTGTGGGGCAGGGCCACGGGCCTGGGTACTTCTGGGTGCTGTCTCAGTTGGCTAT
GGGCCAGTCCTTCCATCTGTGCCTCATTCTCCTCATCCGCACGGTGGTCAGGTGACACCTCCCT
CTTTCTAGCAGGCTTTGATTAATTCTGAAGAACCTCCAATGAACAGAAGGTGGAACGTGGTAGG
CCCCACTGGAGAGTGCTCCTGTCTTCTTGACTTACCTGTTGCGTTTTCCACTTGGGAATAAATG
ACATCACAGGAGGGAGCTCATGATTCTCTCTGACACTGTCCCACTGAGGCACCTTTGAGGCTTG
GCTCAGAGATCCTAAGTCTCTGTCCTGTGTGTCCCTGACCAGCGCCCCTACCCCGAAGTGGAAA
TTCACACACCAAGCAGCCTTACAAATGTAGTCCCTATAGGGCCACATATGGTAGGATAATGACT
GACCTTCAGTGGCTGGTTTGCAGTGTTACAAAGCAAAGGCCTTTCACGTGGGTAGGGGACTCTC
AGGAGGTTTGAATTCAAATGTGGTCAGAGATAGTATATATATTTTGGACAAAATAAGAAGTTTT
TATAAAACTTTTCAAGCTCAACATTGTAAAATCCACATTAAAGATTTTAGGCTATAAACTGTTT
AATTTTATTAGGTAGAAGAAGCAAATTAATCCTTCTGATGCCAAGACATACTTCAAGAAAGTGG
ATAATGACTGCCTTTTCCCTGCCTCACAAACACAAGGGCTATTCATGGCAAGGTTTTGTATATG
TGCTATTCTTCACTCAGATCAGGAGCTGGACGCACCGGTGTGGGCAGTGCCTTGCTTTCTCGTT
AGAAATGTGCTTGCATGTGTCTCCTGGTATAGGCAAACCAGCTCTCTAGAG

hide sequence

RefSeq Acc Id:

XM_008760924 ⟹ XP_008759146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	117,502,811 - 117,617,049 (+)	NCBI
mRatBN7.2	2	115,576,912 - 115,689,153 (+)	NCBI
Rnor_6.0	2	119,197,153 - 119,317,507 (+)	NCBI

Sequence:

show sequence

GCCAGCGACTCGCCATTGGATTAAAAATAGCAGCTCCCGCCCGCTGGCCGGTCGGGGCAGGGGC
CGAGTCTCCCCAGCCTGAGCTGATCCTCAGCCCGCGCGGCCGCTACGTCCAGGTCCTGCTCTCC
CACTGCGCCGCGTTCCTCCCCAGGCCCGCTGCGCTCAGCGGCCATGCAGCGCCGGGGCGCCCTG
TTCAGCGTGCCGGGTGGCGGCGGGAAGATGGCTGCAGGGGACCTGGGTGAGCTGCTGGTGCCTC
ACATGCCCACGATCCGCGTGCCTAGGTCAGGGGACCGCGTCTACAAAAACGAGTGCGCCTTCTC
CTACGACTCTCCGAACTCTGAAGGTGGACTCTATGTATGCATGAATACATTTTTGGCTTTTGGA
AGGGAACACGTTGAAAGACATTTTCGGAAAACTGGACAGAGCGTGTACATGCACCTGAAGAGGC
ACATGCGAGAGGTAAGAGGAGCTTCTGGTGGAGCTTTACCCAAAAGGAGGAATTCTAAACTATT
TTTAGATCTAGATATGGATGACGATTTAAATAGTGACGATTACGAATATGAAGACGAAGCCAAA
CTTGTTATATTCCCAGACCACTATGAAATAGCCCTTCCTAACATTGAGGAGTTACCAGCCCTGG
TAACAATTGCTTGCGATGCAGTGCTCAGCTCAAAGTCCCCGTATAGGAAGCAGGATCCAGACAC
GTGGGAAAACGAACTGCCAGTATCGAAGTACGCCAACAACCTCGTGCAACTGGACAACGGGGTC
AGGATTCCTCCGAGTGGCTGGAAGTGTGCCCGATGTGACCTGCGGGAGAACCTCTGGTTGAATC
TGACTGACGGCTCTGTTCTGTGTGGGAAGTGGTTTTTTGACAGCTCGGGGGGCAATGGCCATGC
GCTGGAGCATTACAGAGACATGGGCTATCCTCTGGCCGTGAAGCTGGGCACCATCACGCCTGAT
GGAGCAGATGTTTATTCTTTTCAAGAAGAGGGGCCTGTTTCGGATCCTCATTTGGCCAAACACT
TAGCACATTTTGGGATTGACATGCTCCACACACAAGGGACAGAGAATGGGTTCCGGGACAATGA
CATCAAGCTGAGAGTCAGCGAGTGGGAAGTGATCCAGGAGTCAGGAACTAAGCTGAAGCCAATG
TATGGCCCAGGGTACACGGGCCTGAAGAACCTGGGCAACAGTTGCTACCTCAGTTCTGTCATGC
AGGCCATCTTCAGCATCCCAGAGTTCCAGAGAGCGTATGTAGGAAACCTCCCAAGGATATTTGA
CTACTCACCATTAGATCCAACGCAGGACTTCAACACACAGATGACTAAGTTGGGACATGGCCTC
CTCTCTGGCCAGTACTCGAAGCCTCCAGTGAAATCTGAGCTCATTGAACAGGTGATGAAGGAGG
AGCACAAGCCTCAGCAGAATGGGATCTCTCCACGAATGTTCAAGGCCTTTGTCAGCAAGAGTCA
CCCAGAATTTTCCTCCAATAGACAGCAGGATGCCCAGGAGTTTTTCTTGCATTTGGTTAATCTG
GTAGAGAGGAATCGCATTGGCTCAGAAAACCCAAGTGATGTTTTCCGGTTTTTGGTGGAAGAGC
GAATTCAATGCTGTCAGACCAGAAAGGTCCGCTACACAGAGAGGGTGGACTACCTTATGCAGTT
ACCAGTGGCAATGGAGGCAGCAACCAACAAAGATGAGCTGATTGCCTATGAACTAATGCGGAGG
GAAGCAGAAACCAACAGGAGACCCCTTCCAGAGCTGGTACGAGCCAAGATCCCATTCAGTGCCT
GTCTTCAGGCCTTTGCTGAACCAGACAATGTGGATGATTTCTGGAGCAGTGCTCTGCAGGCCAA
GTCTGCAGGGGTCAAAACATCTCGCTTTGCCTCATTCCCTGAATACTTGGTAGTGCAGATAAAG
AAGTTCACTTTTGGTCTTGACTGGGTTCCCCGAAAATTTGATGTTTCTATTGATATGCCAGATC
TACTAGATATCAGCCATCTCAGAGCCAGGGGCTTGCAGCCAGGGGAAGAGGAGCTTCCTGACAT
CAGCCCCCCCATAGTCATTCCTGATGACTCAAAAGACCGCTTGATGAACCAGCTGATAGACCCC
TCAGACATTGATGAGTCCTCGGTGATGCAACTGGCTGAGATGGGCTTCCCTTTGGAGGCCTGCA
GGAAGGCTGTGTACTTCACGGGGAATACTGGAGCTGAGGTGGCCTTCAACTGGATTATCGTGCA
CATGGAAGAGCCTGATTTTGCTGAACCACTGGCCATACCTGGGTATGGAGGGGCTGGGGCCTCT
GCCTTTGGTGCTACTGGACTGGACAACCAACCTCCTGAGGAAATCGTAGCTATTATCACTGCCA
TGGGATTCCAGCGCAGTCAGGCGGTACAGGCTCTACAAGCCACGAACCATAACCTGGAAAGAGC
ACTGGACTGGATCTTCAGCCACCCTGAGTTTGAAGAGGACAGTGACTTTGTCATCGAGATGGAG
AACAATGCGAATGCAAACATCATGTCTGAGGCCAAGCCAGAGGGGCCCAGAGTCAAGGATGGGT
CTGGAATGTATGAGTTGTTTGCGTTCATCAGTCACATGGGAACATCTACGATGAGTGGCCATTA
TGTTTGCCATATCAAGAAGGAGGGACGATGGGTGATCTACAATGACCACAAAGTTTGTGCCTCA
GAAAGGCCCCCCAAAGACCTGGGATATATGTACTTTTACCGCAGGATACCAAGCTAAACCTCAC
AAGAATTGGCGAGAAGAAGCCATACACCTTTATAATTTGCCAAAAAAGAAAAAGAAAAAAAAAA
AGAAAAAGGAAAAATAAAGGAAAAAAGTTGGGACAGCCGGATGCGGAGGACTACATGGGTATTT
ACTGCTCCTTTCAAGAGCGTGGTCACTCGACGCCTTCTGGAGAAGAACTGGGAAGAAAATTCTG
TTGGCGGTGATATTCTGTCCTGGGAGATTTTGTAACTCTTCAGGGAGAGAGTGACGGAAGCAAA
GGCATTGTCCACCGGCCCCTCAGAGAGGCACTGTCTTCCCCTCTCTTCTACTTGGGGGGGTCAC
CAGTGAGGGCCCCCCACAGTGAGAAAAATGCCCACTTTTAAAATTTTTCCACATAGGAAATCAA
AACCTGGACTGGCTTTTATTGGTGGCACTTTGTTTTCATTTCCCACAGTAAGTTCTGTGCACAC
TAGGACATCTGCAGTGAGAGCTATTTTTAATTTAAATCACGTCAAACTTTATATTACACTGTAT
GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTTTGTAGTCTGCTGTACGTCTGATGG
ATTGGTGTTCAAAGGCCAAATAGCTGCTTTTAGGCATATTTGGAAAAGGCAGGCAAACATCTTT
AAAAATTATAACTCAGGAACAATTGTTAAAAGTGAGTTCCCCACTTGGATTTTAAAGTACAGAG
AGCTGAGCTGTGGCCCCTTAAGTGCTGTCTGGCATTCATGAGGGTCTGTGTCGTTTGACCTTGA
TGCCAGGTGCCTAAGTCTTGTCACTGTGCTTTGCCAAGGGCAGATGGGATCTCTTCCTCAGTAG
GGCATTCCCTCAAAGCTTTGTGTTTAGTTTTAGTTAAATAACTGGCCTCCCAAGCTCCTGCTTA
CTCCCTGGGATCACGTTAGATGCCTGTGGCTTGTCTGATTTTTTTGGTCCCTGAACTTCCTTGT
GTTTTCACATCTCTGCTTCTCTGGGGCCAGCTTCACCTCTGCCCTCACTGCCTATCTGCTGTGG
CCCATGGTACAACCTGGGGCGCTTTAAGGATGCAAGCTGCAGAAACACCTCTGTTGCAGCTGCA
AAGCCAGGGCCTTCCTTCCTTGTCATTTCCGGGTCCTAGCTGTGGTCTGAGATCAGAGCAGAGT
TGTGGATGTGCAGTGGAGAGGAACCAGAGCTCTCCATAATTTTCTTACTACTTCTCATCAAATT
CCAGCCTCTGGAGTTTCTAGTTCAGATTATTGATCAGATGGGAAAGGATTTATTGCTGTCTGCT
TGATGTGTGCTTGTTTGATTGATCTTTGCAGGAACTGCAGAAAAAAAATGATGAAATAGAAACG
GAATGGGCTGAGTAAGCAGAGGCATTGGGTTGGGATGGGATGAGTCTGAACAGTCAGAGTTCAA
ACCCTGGGGCCCTGTCTCAAGGAAGACCCCGTGTAAGTCCGGGCTGTGGGGCAGGGCCACGGGC
CTGGGTACTTCTGGGTGCTGTCTCAGTTGGCTATGGGCCAGTCCTTCCATCTGTGCCTCATTCT
CCTCATCCGCACGGTGGTCAGGTGACACCTCCCTCTTTCTAGCAGGCTTTGATTAATTCTGAAG
AACCTCCAATGAACAGAAGGTGGAACGTGGTAGGCCCCACTGGAGAGTGCTCCTGTCTTCTTGA
CTTACCTGTTGCGTTTTCCACTTGGGAATAAATGACATCACAGGAGGGAGCTCATGATTCTCTC
TGACACTGTCCCACTGAGGCACCTTTGAGGCTTGGCTCAGAGATCCTAAGTCTCTGTCCTGTGT
GTCCCTGACCAGCGCCCCTACCCCGAAGTGGAAATTCACACACCAAGCAGCCTTACAAATGTAG
TCCCTATAGGGCCACATATGGTAGGATAATGACTGACCTTCAGTGGCTGGTTTGCAGTGTTACA
AAGCAAAGGCCTTTCACGTGGGTAGGGGACTCTCAGGAGGTTTGAATTCAAATGTGGTCAGAGA
TAGTATATATATTTTGGACAAAATAAGAAGTTTTTATAAAACTTTTCAAGCTCAACATTGTAAA
ATCCACATTAAAGATTTTAGGCTATAAACTGTTTAATTTTATTAGGTAGAAGAAGCAAATTAAT
CCTTCTGATGCCAAGACATACTTCAAGAAAGTGGATAATGACTGCCTTTTCCCTGCCTCACAAA
CACAAGGGCTATTCATGGCAAGGTTTTGTATATGTGCTATTCTTCACTCAGATCAGGAGCTGGA
CGCACCGGTGTGGGCAGTGCCTTGCTTTCTCGTTAGAAATGTGCTTGCATGTGTCTCCTGGTAT
AGGCAAACCAGCTCTCTAGAGTACCAGTGGGATATATCACTTATCTTACGTGTGTAAATGGGAC
GCTTGTGGCCACAACTGGAACAACGTGGGCTGTGTCTGCTGACCCACCTGCTGGGAGTCTTTTT
GTGTGAGATGTGGCGTGATTGTGTGGCTCTCTCTCCATGTAGGCATCTGTGTGGAGGACAGAGC
TTTCTTCCTGTAAATATCTTTTGATATCCATTTGTGTAGACTCCCAATATGTCTTTGGAAAATG
GATCTGTTTTGTCAGTTGGTCGAAATACCCAAATAACAAGTCAGAAATCAAGCTTGGTATAGGT
TTTCTTTTTCTTCTGAATGAGAAGAATCTGGGAAGAATCATATTTTAATGACATTTTATATCAA
TGTTCCTTCAGGATTTTGGAATCGATGAGCTTGTTTTCCCAAGCCTACAAGAGAATGTGCCTGC
CATTTCCCCGGCATCCCTTTGTGGTCCCATTACCTCAGCTGAAGACTTACAAGTGTGCTTATGT
CCTGACAGCATCTCTGTGTCACATGCCTGAGTCTCACTGCTGCTGGGCCCTTGTCTCTGGACCA
GGAGGTTAGACCAGATAATCTGTGAAGTCTCCTTCTGTCTGGCCACTACATTTTGTGTTTATTT
TTCTGTGGTTCTGTCCAGAATCAGACATGAGCTGTGGCGGTCACTCAGGAGTTTCAGTGTTGGA
GTCTGCAGCTATTCTAGCTTGTAGGTTGCTGACATCATTGGTCCACATCCCATTTCTCTTCCTG
ATCTATTTTCTTTGGTAATCTCACTTCCCCCCAACCCTGAACTCAAAACTTTTCAGTCTATGAG
GTCCTTTGCTACTGCCCCCCACTCCAAACAAAAGCAGCAATGCATGTATGTCATCCTCTTGGAA
AAGTCTCAGAATGCCTCTCAGCTCGCTCTGACATGCACAATATTTTAAAATCCTGATTCCATTG
TTGCTAGTCCCATCCTCAGATATGTGCTGCCAAAGCTGTCTGTCCTAGAAAGGGTGTCTTCATC
ATCATAGATGCCGTGGCTTCTGGATCTCATCACAGATCTTCATAGTCTGTGGGGTTACTAGGAG
ACATGAGCAGAACAGAGGATGGCATTAGATATAATGTGCTTCTGCCTGTCAGGGCAGTGTCTCA
GGGGACAGAACAAGGTCTGTGCTGTGAAGCTGGTGGGTGCCACCTACTCGATGCCACCAGGATT
TCCTACTCTCCTAATTTGATTTTCATTGGTGTAATAAAGACGATGAACAAAAACAAGTTGGGAA
GGAAAGGGTTTATTTGGTCTTATAAAGTAACACCCCACCAGGAGGGGAAGTCAGGGCAGGAACT
GAAGGCAGGAACTGAGGCAGAGGCCGTGGAGGAGTGCTTCTTACTGGCTTGTTCCCCCCTTCTC
TCTTAGCCTGCTTTCCAGGACCACCCACACTGGGCTGGGCCCTCCCTCACCAATCATTAATCAA
GAAAATGTCCTGTAGGCTTACCCACGAGCTGATCTTAAAGGAAGCATTTTCTCAGTTGAGGTTG
CCTCTTTCAGATGATCTTAGCTTGAGTCAAATGAACCCAAACAAACAAACACAAGCTAATCAGC
ACAGTCCTCTGTAATTCATCACCCTTATAGTTGGTGGCAGGCTCTGTAGCTCTCTAGCCTGGTG
GGACTTGGTCAGTCCATACTGAGGTTGTTCCATATACATAAAACGCACACTAATACTTGGAAAG
CTTCAACAAGCGGAATGACTGTTGCAAATGATGTTGACTGCATGTGATGGTAATTTAATATTAA
CATTTCCACTGTCATCTGTTCTTAGCATGGCTACTGAGCAATTCAGAAGTGTGCCTAAGGCCCA
GCCATTATTGTTCTGCACTGAGAGGTCGCCAGTGAAATCCCATGAGTGAGACAGGACCCTGCAG
AGACTCTGAATCAAAACAACACAGATGGTTTTGCTGGAGTTGAGGGCGCATGAAGCACTGGACA
AGGCCCAGAAACCACAAGAACCACCTTGTAGGTTCTGGGGCTATTTTGCTTAAACACCCCCCCC
CCCCACACACACACCCCTTCAGCTGCAAAAGCAGTGTGCCCCCCAGTGGCCTTCTCTTGGCCTT
GCTCCGGTGCTGCCCTGTAGATTAGCAACTGTTTTCCCAGCATCCTCCAGGTGCTGTGGATGTT
AGCTGGGGCAGAGGTTTGGGCATACTGCTTTCAATTCAGGCAACATTCTCTTGTGGTCCCTCTC
CCCGTGTCCTGTATTCTGTTCCCAGCTGGGCATGTGGAAAGGCTGTGTGGATCTCAGCTCCTCC
GCTTGCACAGAGGCTGAGCCTGACCTGTGCCCGTCTGCTCAGCAGTGTTACTGTTGGTGGCTGG
AAGACTTGGTATTTATTTATTTTGCACTAGTCACAGTTGGTGTGGAAACTACTTCAAGTGTTTG
GGAGACTACTTGGCTATAACGGAAAGAGATGGATAATTTATTGCTTTGATAGTTTTAAATTAAA
AGCTATTCTCACAAACTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101135	(Get FASTA)	NCBI Sequence Viewer
	XP_008759146	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ADM34981	(Get FASTA)	NCBI Sequence Viewer
	EDM01211	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000039985
	ENSRNOP00000039985.4
	ENSRNOP00000105099.1
	ENSRNOP00000108074
	ENSRNOP00000108074.1
	ENSRNOP00000109039.1
	ENSRNOP00000109476.1
	ENSRNOP00000109744.1

RefSeq Acc Id:

NP_001101135 ⟸ NM_001107665

- UniProtKB:

D3ZDI9 (UniProtKB/TrEMBL), A6IHR3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQRRGALFSVPGGGGKMAAGDLGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCM
NTFLAFGREHVERHFRKTGQSVYMHLKRHMREKVRGASGGALPKRRNSKLFLDLDMDDDLNSDD
YEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANN
LVQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAV
KLGTITPDGADVYSFQEEGPVSDPHLAKHLAHFGIDMLHTQGTENGFRDNDIKLRVSEWEVIQE
SGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQ
MTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQE
FFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDEL
IAYELMRREAETNRRPLPELVRAKIPFSACLQAFAEPDNVDDFWSSALQAKSAGVKTSRFASFP
EYLVVQIKKFTFGLDWVPRKFDVSIDMPDLLDISHLRARGLQPGEEELPDISPPIVIPDDSKDR
LMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAIP
GYGGAGASAFGATGLDNQPPEEIVAIITAMGFQRSQAVQALQATNHNLERALDWIFSHPEFEED
SDFVIEMENNANANIMSEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHIKKEGRWVIY
NDHKVCASERPPKDLGYMYFYRRIPS

hide sequence

RefSeq Acc Id:

XP_008759146 ⟸ XM_008760924

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQRRGALFSVPGGGGKMAAGDLGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGLYVCM
NTFLAFGREHVERHFRKTGQSVYMHLKRHMREVRGASGGALPKRRNSKLFLDLDMDDDLNSDDY
EYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTWENELPVSKYANNL
VQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVK
LGTITPDGADVYSFQEEGPVSDPHLAKHLAHFGIDMLHTQGTENGFRDNDIKLRVSEWEVIQES
GTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQM
TKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQEF
FLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELI
AYELMRREAETNRRPLPELVRAKIPFSACLQAFAEPDNVDDFWSSALQAKSAGVKTSRFASFPE
YLVVQIKKFTFGLDWVPRKFDVSIDMPDLLDISHLRARGLQPGEEELPDISPPIVIPDDSKDRL
MNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAIPG
YGGAGASAFGATGLDNQPPEEIVAIITAMGFQRSQAVQALQATNHNLERALDWIFSHPEFEEDS
DFVIEMENNANANIMSEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHIKKEGRWVIYN
DHKVCASERPPKDLGYMYFYRRIPS

hide sequence

Ensembl Acc Id:

ENSRNOP00000039985 ⟸ ENSRNOT00000048030

Ensembl Acc Id:

ENSRNOP00000109744 ⟸ ENSRNOT00000136756

Ensembl Acc Id:

ENSRNOP00000109039 ⟸ ENSRNOT00000161795

Ensembl Acc Id:

ENSRNOP00000109476 ⟸ ENSRNOT00000167128

Ensembl Acc Id:

ENSRNOP00000108074 ⟸ ENSRNOT00000157346

Ensembl Acc Id:

ENSRNOP00000105099 ⟸ ENSRNOT00000170091

Protein Domains

UBA UBP-type USP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZDI9-F1-model_v2	AlphaFold	D3ZDI9	1-858	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691283

Promoter ID:

EPDNEW_R1808

Type:

multiple initiation site

Name:

Usp13_1

Description:

ubiquitin specific peptidase 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	119,197,228 - 119,197,288	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306044	AgrOrtholog
BioCyc Gene	G2FUF-53415	BioCyc
Ensembl Genes	ENSRNOG00000030639	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000048030	ENTREZGENE
	ENSRNOT00000048030.7	UniProtKB/TrEMBL
	ENSRNOT00000136756.1	UniProtKB/TrEMBL
	ENSRNOT00000157346	ENTREZGENE
	ENSRNOT00000157346.1	UniProtKB/TrEMBL
	ENSRNOT00000161795.1	UniProtKB/TrEMBL
	ENSRNOT00000167128.1	UniProtKB/TrEMBL
	ENSRNOT00000170091.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	Cysteine proteinases	UniProtKB/TrEMBL
	DNA helicase RuvA subunit, C-terminal domain	UniProtKB/TrEMBL
InterPro	Papain_like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_C19ubi-hydrolase_C_CS	UniProtKB/TrEMBL
	Peptidase_C19	UniProtKB/TrEMBL
	Ub_carboxyl-term_hydrolase	UniProtKB/TrEMBL
	UBA-like	UniProtKB/TrEMBL
	UBA/transl_elong_EF1B_N_euk	UniProtKB/TrEMBL
	Ubiquitinyl_hydrolase	UniProtKB/TrEMBL
	UBP13_Znf-UBP_var	UniProtKB/TrEMBL
	UCH/PAN2	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_UBP	UniProtKB/TrEMBL
KEGG Report	rno:310306	UniProtKB/TrEMBL
NCBI Gene	310306	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 13	UniProtKB/TrEMBL
Pfam	UBA	UniProtKB/TrEMBL
	UBA_7	UniProtKB/TrEMBL
	UCH	UniProtKB/TrEMBL
	zf-UBP	UniProtKB/TrEMBL
	zf-UBP_var	UniProtKB/TrEMBL
PhenoGen	Usp13	PhenoGen
PIRSF	UBP	UniProtKB/TrEMBL
PROSITE	UBA	UniProtKB/TrEMBL
	UCH_2_1	UniProtKB/TrEMBL
	UCH_2_2	UniProtKB/TrEMBL
	UCH_2_3	UniProtKB/TrEMBL
	ZF_UBP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000030639	RatGTEx
SMART	UBA	UniProtKB/TrEMBL
	ZnF_UBP	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF54001	UniProtKB/TrEMBL
	UBA_like	UniProtKB/TrEMBL
UniProt	A0ABK0LNH4_RAT	UniProtKB/TrEMBL
	A0ABK0LTL1_RAT	UniProtKB/TrEMBL
	A0ABK0LX64_RAT	UniProtKB/TrEMBL
	A0ABK0LZN1_RAT	UniProtKB/TrEMBL
	A0ABK0M4U5_RAT	UniProtKB/TrEMBL
	A6IHR3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZDI9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-26	Usp13	ubiquitin specific peptidase 13	Usp13	ubiquitin specific protease 13 (isopeptidase T-3)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Usp13	ubiquitin specific protease 13 (isopeptidase T-3)	Usp13_predicted	ubiquitin specific protease 13 (isopeptidase T-3) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Usp13_predicted	ubiquitin specific protease 13 (isopeptidase T-3) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD