Epb41l4a (erythrocyte membrane protein band 4.1 like 4A)

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Gene: Epb41l4a (erythrocyte membrane protein band 4.1 like 4A) Rattus norvegicus

Analyze

Symbol:

Epb41l4a

Name:

erythrocyte membrane protein band 4.1 like 4A

RGD ID:

1306034

Description:

Predicted to enable cytoskeletal protein binding activity. Predicted to be located in cytoskeleton. Orthologous to human EPB41L4A (erythrocyte membrane protein band 4.1 like 4A); INTERACTS WITH 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

band 4.1-like protein 4A; Epb4.1l4a; erythrocyte protein band 4.1-like 4a; LOC307514

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	25,680,169 - 25,890,998 (-)	NCBI		GRCr8
mRatBN7.2	18	25,405,461 - 25,615,392 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	25,406,057 - 25,615,149 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	25,533,402 - 25,614,494 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	26,296,366 - 26,377,354 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	25,629,144 - 25,710,238 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	26,570,051 - 26,788,586 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	26,570,647 - 26,658,892 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	26,283,764 - 26,500,216 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	26,270,035 - 26,350,940 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	26,296,631 - 26,506,030 (-)	NCBI
Celera	18	25,149,125 - 25,230,765 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Failure to Thrive (ISO)

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

afimoxifene (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (EXP,ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bucladesine (ISO)

butanal (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (EXP)

copper(II) chloride (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

DDE (ISO)

endosulfan (EXP)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

iron dichloride (ISO)

L-methionine (ISO)

medroxyprogesterone acetate (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

pirinixic acid (ISO)

potassium dichromate (ISO)

progesterone (ISO)

silicon dioxide (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

thimerosal (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoskeleton (IEA)

Molecular Function

cytoskeletal protein binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Epb41l4a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	25,680,169 - 25,890,998 (-)	NCBI		GRCr8
mRatBN7.2	18	25,405,461 - 25,615,392 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	25,406,057 - 25,615,149 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	25,533,402 - 25,614,494 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	26,296,366 - 26,377,354 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	25,629,144 - 25,710,238 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	26,570,051 - 26,788,586 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	26,570,647 - 26,658,892 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	26,283,764 - 26,500,216 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	26,270,035 - 26,350,940 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	26,296,631 - 26,506,030 (-)	NCBI
Celera	18	25,149,125 - 25,230,765 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

EPB41L4A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	112,141,829 - 112,419,935 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	112,142,441 - 112,419,313 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	111,478,137 - 111,754,974 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	111,526,214 - 111,782,909 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	111,528,597 - 111,782,909	NCBI
Celera	5	107,444,034 - 107,700,724 (-)	NCBI		Celera
Cytogenetic Map	5	q22.1-q22.2	NCBI
HuRef	5	106,677,500 - 106,934,094 (-)	NCBI		HuRef
CHM1_1	5	110,931,551 - 111,188,234 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	112,652,255 - 112,930,859 (-)	NCBI		T2T-CHM13v2.0

Epb41l4a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	33,929,380 - 34,143,678 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	33,929,380 - 34,140,019 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	33,796,327 - 34,007,484 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	33,796,327 - 34,006,966 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	33,955,981 - 34,166,860 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	33,921,128 - 34,132,007 (-)	NCBI		MGSCv36	mm8
Celera	18	34,233,123 - 34,450,634 (-)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI
cM Map	18	18.19	NCBI

Epb41l4a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	2,876,345 - 3,097,365 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	2,876,345 - 3,097,365 (+)	NCBI	ChiLan1.0	ChiLan1.0

EPB41L4A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	107,420,114 - 107,679,970 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	105,573,774 - 105,833,270 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	107,524,306 - 107,783,354 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	113,325,676 - 113,586,003 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	113,328,040 - 113,585,549 (-)	Ensembl	panpan1.1		panPan2

EPB41L4A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	507,516 - 686,861 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	507,069 - 686,751 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	1,908,010 - 2,088,734 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	430,971 - 535,511 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	353,001 - 535,509 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	343,019 - 523,728 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	340,208 - 520,539 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	503,661 - 684,169 (+)	NCBI		UU_Cfam_GSD_1.0

Epb41l4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	154,941,925 - 155,176,898 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	6,432,927 - 6,669,668 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	6,435,014 - 6,669,794 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EPB41L4A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	117,235,472 - 117,502,424 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	117,235,187 - 117,501,698 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	121,986,206 - 122,126,208 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EPB41L4A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	15,482,824 - 15,742,956 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	15,480,565 - 15,742,359 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	62,726,101 - 62,983,859 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Epb41l4a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	29,961,687 - 30,215,681 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	29,963,689 - 30,216,767 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Epb41l4a
1852 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	305
Count of miRNA genes:	200
Interacting mature miRNAs:	229
Transcripts:	ENSRNOT00000038247
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944273	26548295	Rat
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25758124	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	11944273	26548295	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	11944273	26548295	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	11944273	26548295	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	11944273	26548295	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	11944273	26548295	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	11944273	26548295	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25758124	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat

Markers in Region

RH133537

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	25,405,528 - 25,405,729 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	26,570,119 - 26,570,319	NCBI	Rnor6.0
Rnor_5.0	18	26,283,832 - 26,284,032	UniSTS	Rnor5.0
RGSC_v3.4	18	26,269,509 - 26,269,709	UniSTS	RGSC3.4
Celera	18	25,148,599 - 25,148,799	UniSTS
RH 3.4 Map	18	339.5	UniSTS
Cytogenetic Map	18	p12	UniSTS

BF389079

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	25,407,169 - 25,407,305 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	26,571,760 - 26,571,895	NCBI	Rnor6.0
Rnor_5.0	18	26,285,473 - 26,285,608	UniSTS	Rnor5.0
RGSC_v3.4	18	26,271,150 - 26,271,285	UniSTS	RGSC3.4
Celera	18	25,150,240 - 25,150,375	UniSTS
RH 3.4 Map	18	336.8	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

appendage

High

Medium

198

114

Low

141

198

126

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038247 ⟹ ENSRNOP00000032777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	25,406,057 - 25,485,157 (-)	Ensembl
Rnor_6.0 Ensembl	18	26,570,647 - 26,658,892 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086729 ⟹ ENSRNOP00000069707

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	25,406,243 - 25,592,895 (-)	Ensembl
Rnor_6.0 Ensembl	18	26,571,039 - 26,656,879 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099986 ⟹ ENSRNOP00000091694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	25,406,243 - 25,615,149 (-)	Ensembl

RefSeq Acc Id:

NM_001107397 ⟹ NP_001100867

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	25,680,169 - 25,761,253 (-)	NCBI
mRatBN7.2	18	25,406,055 - 25,487,099 (-)	NCBI
Rnor_6.0	18	26,570,645 - 26,658,892 (-)	NCBI
Rnor_5.0	18	26,283,764 - 26,500,216 (-)	NCBI
RGSC_v3.4	18	26,270,035 - 26,350,940 (-)	RGD
Celera	18	25,149,125 - 25,230,765 (-)	RGD

Sequence:

show sequence

AACTGGGAGACCACGACCCATGTAAGCACACTGCGGGGTACGTGTCGGAGTACCGGTTTGTTCC
TGATCAGAAGGAAGAACTGGAAGAATCTATAGAAAGGATTCACAAGACTCTAATGGGTCAGGCT
CCTTCCGAAGCTGAGCTGAATTACTTGAGGACTGCGAAATCCCTGGAGATGTACGGCGTTGACC
TCCATCCTGTCTATGGAGAAAATAAGTCCGAGTATTTCTTAGGATTGACTCCAGTGGGTGTTGT
CGTCTATAAGAATAAAAAGCAAGTGGGGAAGTATTTCTGGCCTCGGATTACCAAGGTGCACTTC
AAGGAAACCCAGTTTGAACTCAGAGTCTTGGGAAAAGACTGTAATGAGACCTCGTTCTTTTTTG
AAGCTCGGAGCAAAACTGCTTGCAAACACCTCTGGAAATGCAGTGTGGAGCACCATACATTTTT
CAGGATGCCAGAAACAGAGTCAAATTCACTGTCAAGAAAACTCAGCAAGTTTGGGTCCATAAGT
TATAAACACCGATACAGTGGCAGGACAGCTTTGCAAATGAGCCGAGATCTTTCCATCCAACTTC
CCCGGCCCAACCAGAACGTGGTGAGAAGTCGAAGCAAGACTTACCCCAAGAGGGTAGCACAGAC
GCAGCCCGCTGGATCCAACAGCATCAATCGGATGACTGCAAACTTGGAAAACGGGGAGAATGAA
GGAACCACCAAGATCATTGCGCCCTCACCAGTGAAAAGTTTTAAGAAAGCAAAGAATGAAAACA
GTCCTGACCCCCAAAGAAGCAAATCTCATGCACCATGGGAAGAAAACGGACCCCAGAGTGGACT
CTACAACTCCCCCAGTGACCGCACTAAGTCACCAAAGTTTCCCTGTACCCGGCAGCGCAACCTC
TCCTGTGGCAGCGACAATGACTCCTCGCAGCCAATGAGGCGAAGGAAGGCTCACCACAGTGGGG
AAGACTCGGATCTAAAGCAACGGAGGAGGTCACGCTCACGCTGTAACACGAGCAGTGGTAGTGA
GTCAGAAAATTCTAACAGAGAACACCGGAAGAAGAGAAACAGAATACGACAGGAGAATGACATG
GTTGATTCAGCGCCTCAGTGGGAAGCCGTGTTAAGGAGACAGAAGGAGAAAAACCAAGTGGATC
CTAACAACCGGAGATCCAGGCACAGATCTCGCTCGAGAAGTCCTGATATCCAAGCAAAAGAAGA
ACTGTGGAAGCATATCCAGAAGGAGCTTGTGGACCCATCCGGGTTGTCAGAGGAGCAGTTGAAA
GAGATCCCATACACTAAAGTGGAGACTCAGGGTGACCCTGTCCGCATCAGGCATTCGCATTCCC
CAAGGAGTTACCGGCAGTACCGCAGATCCCAGTGCTCAGACGGAGAGCGATCCGTCCTCTCGGA
AGTGAACTCAAAGACAGATCTTGTACCACCACTTCCAGTCACCCGTTCCTCAGATGCTCAGGGG
TCTGGAGGCTCTACAGTTCATCAGAGAAGAAACGGGTCTAAAGACAGCCTGATTGAAGAAAAAT
CTCAGCTTTCTACAACCAACCTGGCTGGAAAACATACAGCAAAAACAATAAAAACCATCCAGGC
TGCTCGGCTCAAGACAGACGTCACTGGGTGAAGGGGTGTAGGGAAACGTGTGTCACTGGTACTT
TTCAAACTGTGAATTAGATAATTACCCACGTATCTTGGACTCGTGTCCTTAGCACAAGAAAATT
GGCATCTTTTAAGGATTTATGTACAGCATTCTTGTGCTGTGGGCCTTTGGAAGGACAACCTTAT
GAACTCACTGGATACCACCATCTCTTTCCTGAAATTCTGACCATCCAACTGTGTTTCTCACCTC
TCCACCACAGCCAAGACCAGAGGCTTCAGATGAGCCCCTGGACTCCCAGCTGCCATCAGACTGT
AGTGACTTTTATTCCCACAACTGTTTGTAATATTGTATTTTGTGACATTTAAGTCCCAATGGTT
ATTTACAAATAATGTAAAAAGCTGTTAAGTGTTGATTTGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254583 ⟹ XP_006254645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	25,680,169 - 25,890,998 (-)	NCBI
mRatBN7.2	18	25,405,461 - 25,615,391 (-)	NCBI
Rnor_6.0	18	26,570,051 - 26,788,586 (-)	NCBI
Rnor_5.0	18	26,283,764 - 26,500,216 (-)	NCBI

Sequence:

show sequence

TCGCTCTGTAGACCAGGCTGGCCTCGAACTCAGAGTGCTGGGGTTAAAGGCATGCATCAGTCTC
ATTTGGCGATTACAGGAAAGCTGCATTGCAGAAAAGCCTCCACAGTGAGGTATTAAAACCCAGA
GGTTTAAGTTGGAGTTTTACAGTAGAATTCAAAGTTGCATATAGAATTTGATTAAAACCTCAGA
GCCTGCCTCAATATCAGAAACATTGGAAGATAAACTAGGGTTTTACTGGCAGTTGGGCGCATCC
GATGTTTCCTGGAAGTTGGGAAAAGCTAAGTTTCATACAGAAGTCCTTCGTGGGAAGTCACTGT
GTAGACAACTCTGCCAACTGTTGCAAAACTGTTTTTTTCTGTGTTGGGGACACGAAGTTTTTAC
TTAGGTTTTAAGCAAAAAAAATTTTTCTTTTGACTTTTGACTATGCAAGCTAACAAGTGGTAGA
GGAGCAAATTCATAGTTGATGTTAAGTTCTTTCTCGTTCTATTCTTTCATACAGAACAAAGTTC
TGCAAGGCACCCATCTGCTACGCCCGCTCCGCGGTGCGTCCTCCCTTTTGCGGTCCGTGACTGT
GACTAGTACTAATTTGCCCCTGCTTCCAAGTAAGAGAACTCAGACTGCACCTGCTCCCAGGGCC
AGCGGGGGTCCTGGGCCTTCCACGCTCGGCTTGAATTGCTCGTGCACGGACACGACGACCCGCC
AGGGGTCACTGTAGCCTCAGAGCTATTGTGCCCACCAGTGCCTGGCCCCGGCTGGCCTCGCGGA
GGGCGTGGGACTGGGACCGCAGAACACTGGGGTCGGAGCAGAACTGCGCCTTGCCTGCCTGAAG
CCAACCTTCCGGTCTCCCAGGGAAACGAACGCGGTGACCTCGCGACGGCCGGGCTACTCGGCAC
AGCGCACGCGTTCTCGCCGGGACCTGCAGGCACCCAGCCAGACTGACCACCTCCGCCCCGCCCT
CCGCCCCCGGCTGAGACCCCGCCCTGAAGGGGGGCGCTCGGGTCACCGTCCCGGGGCTATCCAG
CTTCAGATCCGAGGCTTTTTGCCGACACCCCGGGCCGGGACCCGCTGTACCTGGGCTGCTCCCT
CCAGGGCCCCGCCCTGCGCGCCACCAAGAACTTTCCCTGGAGCCTCGGAGGCCTGGCGCCCCGG
GTTCTGCCGCGCCGCCCGCAGGTCCTCAGACACCCGGCTTTTCCAGGACGTTCGGGGAAGGAAG
CTTGAACTTGGCCATCTCCGCGGGATGAGTTCGGGGACCTTCGGACAGAAGCTACAGGCCGCGA
CAAGCTGACCTCCCCCGGTTGGTTTCCTGGAGCCCTGGTCGGTCCCCGGGCAGTGAGAGTGGCG
GAGGGAGTGGCGACCTTCGCCGGTAGCCCTGCGTCCCAGTCCTGGTCACCCTCGACACAAAAGA
GAAGCTGAGCGCTCTGGACTCTGCCTTCCCTGTTAGGGGCTGCGGGGCGGGGTCGGCGCTGGAA
GTGCGCGCCCGGCGAGGACTCGGGAGCTGCGGCTGGGGAATCGCTCCAGTGCTAGCGTTGGGCT
GGCGCTGCGGAGTACCGAGGGGCATCAGAGTCCAGGGAAGGTCTGGAGGGCTCGTCCCGCCCTT
TTCGTGTCTCGGGTCGGCGGACCTTAGCCAGGTGATTCTTGTTGTCCTCAGGTCGCCGCCCCAT
TCTTCAGAAGAGGAGCTGCTGCCGCAGGATGCGCGGGGACGCGCCACCCCTGGTTCCCAGTTCT
GCGGACGCTTCTCGGGCGACTCCGGGCTCTTGACGCCCCGAGGCGCGCTCGCCCTCCCGCCTTC
GCTGTCCGAGCCTCTCGGGGTGCCTTCGGCTCACCATAGAACCCCAGACCTTACCCTCACCCGG
GGGGCCCCACCCAGACCCGCGCCTCTCGCCCTCTACACGGCGCGCACAATAAATTAATGCTTCG
CGCTTGAGGGGAGGCGGCGGCGGGCGCCGCGGTCGCTGCTCTCGCCTGACTGGAGACGCTTTCA
GCCGACATGGGCTGTTTCTGCGCCGTTCCGGAAGAATTTTACTGCGAAGTTTTGCTCCTGGACG
AGTCCAAGCTCACCCTCACCACCCAGCACCAGGGCATCAAGAAGTCAACCAAAGGTTCCGTTGT
CCTTGACCATGTTTTCCGTCACGTAAACCTCGTGGAGATAGATTATTTTGGTCTGCGATACTGC
GACAGAAGCCATCAGACATATTGGCTGGATCCCGCAAAAACTCTTGCAGAACACAAGGAACTAA
TCAACACTGGACCTCCGTATACTTTGTATTTTGGTATTAAATTCTATGCTGAAGATCCATGTAA
GCTCAAAGAAGAGATAACCAGATATCAGTTTTTCTTACAGGTGAAGCAAGATGCCCTTCAGGGC
CGTCTGCCTTGTCCTGTCAATATTGCCGCTCAGCTGGGAGCCTATGCCATCCAGGCCGAACTGG
GAGACCACGACCCATGTAAGCACACTGCGGGGTACGTGTCGGAGTACCGGTTTGTTCCTGATCA
GAAGGAAGAACTGGAAGAATCTATAGAAAGGATTCACAAGACTCTAATGGGTCAGGCTCCTTCC
GAAGCTGAGCTGAATTACTTGAGGACTGCGAAATCCCTGGAGATGTACGGCGTTGACCTCCATC
CTGTCTATGGAGAAAATAAGTCCGAGTATTTCTTAGGATTGACTCCAGTGGGTGTTGTCGTCTA
TAAGAATAAAAAGCAAGTGGGGAAGTATTTCTGGCCTCGGATTACCAAGGTGCACTTCAAGGAA
ACCCAGTTTGAACTCAGAGTCTTGGGAAAAGACTGTAATGAGACCTCGTTCTTTTTTGAAGCTC
GGAGCAAAACTGCTTGCAAACACCTCTGGAAATGCAGTGTGGAGCACCATACATTTTTCAGGAT
GCCAGAAACAGAGTCAAATTCACTGTCAAGAAAACTCAGCAAGTTTGGGTCCATAAGTTATAAA
CACCGATACAGTGGCAGGACAGCTTTGCAAATGAGCCGAGATCTTTCCATCCAACTTCCCCGGC
CCAACCAGAACGTGGTGAGAAGTCGAAGCAAGACTTACCCCAAGAGGGTAGCACAGACGCAGCC
CGCTGGATCCAACAGCATCAATCGGATGACTGCAAACTTGGAAAACGGGGAGAATGAAGGAACC
ACCAAGATCATTGCGCCCTCACCAGTGAAAAGTTTTAAGAAAGCAAAGAATGAAAACAGTCCTG
ACCCCCAAAGAAGCAAATCTCATGCACCATGGGAAGAAAACGGACCCCAGAGTGGACTCTACAA
CTCCCCCAGTGACCGCACTAAGTCACCAAAGTTTCCCTGTACCCGGCAGCGCAACCTCTCCTGT
GGCAGCGACAATGACTCCTCGCAGCCAATGAGGCGAAGGAAGGCTCACCACAGTGGGGAAGACT
CGGATCTAAAGCAACGGAGGAGGTCACGCTCACGCTGTAACACGAGCAGTGGTAGTGAGTCAGA
AAATTCTAACAGAGAACACCGGAAGAAGAGAAACAGAATACGACAGGAGAATGACATGGTTGAT
TCAGCGCCTCAGTGGGAAGCCGTGTTAAGGAGACAGAAGGAGAAAAACCAAGTGGATCCTAACA
ACCGGAGATCCAGGCACAGATCTCGCTCGAGAAGTCCTGATATCCAAGCAAAAGAAGAACTGTG
GAAGCATATCCAGAAGGAGCTTGTGGACCCATCCGGGTTGTCAGAGGAGCAGTTGAAAGAGATC
CCATACACTAAAGTGGAGACTCAGGGTGACCCTGTCCGCATCAGGCATTCGCATTCCCCAAGGA
GTTACCGGCAGTACCGCAGATCCCAGTGCTCAGACGGAGAGCGATCCGTCCTCTCGGAAGTGAA
CTCAAAGACAGATCTTGTACCACCACTTCCAGTCACCCGTTCCTCAGATGCTCAGGGGTCTGGA
GGCTCTACAGTTCATCAGAGAAGAAACGGGTCTAAAGACAGCCTGATTGAAGAAAAATCTCAGC
TTTCTACAACCAACCTGGCTGGAAAACATACAGCAAAAACAATAAAAACCATCCAGGCTGCTCG
GCTCAAGACAGACGTCACTGGGTGAAGGGGTGTAGGGAAACGTGTGTCACTGGTACTTTTCAAA
CTGTGAATTAGATAATTACCCACGTATCTTGGACTCGTGTCCTTAGCACAAGAAAATTGGCATC
TTTTAAGGATTTATGTACAGCATTCTTGTGCTGTGGGCCTTTGGAAGGACAACCTTATGAACTC
ACTGGATACCACCATCTCTTTCCTGAAATTCTGACCATCCAACTGTGTTTCTCACCTCTCCACC
ACAGCCAAGACCAGAGGCTTCAGATGAGCCCCTGGACTCCCAGCTGCCATCAGACTGTAGTGAC
TTTTATTCCCACAACTGTTTGTAATATTGTATTTTGTGACATTTAAGTCCCAATGGTTATTTAC
AAATAATGTAAAAAGCTGTTAAGTGTTGATTTGAATTTAAGTGTCCTTGTCTTGTGTTTTCTGA
GGCAAAAAAAAAAAAAAAAAAGCCCATGTAGGCATTGTCCCCTACCCTACACACCTGTCCACCC
ATGTTTCCAAGTTTTGGATCTTTACCTCTGTGTGATGGCTTTTCAGACAACAGTACTCAGAAAG
AACCTTCTGTATCTTGCCAGTGGCTGTGTGTGACTCATCCTTTCCTGTAGCAATCTCTAGCTTC
CTTGAAATTCTCCATTCTTATTATTTAAGCCTCTGCTGGGCTCAAGAGCTATGTTGATCTTGTA
GCCAGTTTTATTACTACCTAGTGATTCAACTGGGGGTCGACTGCTCAGTGACACAGTGCTTGCC
AAACTCTACCCTCAACTCCTGAGGTTCAACTGTGACCTTTGTCCCCCTGCCCCCAAAACTAAAA
CCAAATCTAAATATTCCTTCCCACGCAGTGTCCTGTCTCAATGCCTTCATACACTGCTTTAATT
CTAGGCTGCCTCTACACCCCACATCCTTTGCAGCTTACCTCACTGTGGTACCTTCTTCGGCCCA
CCTGCGTGGAACTGCTTTGCTCCCCATCTTGCTTTAATAAAACCTAAGCCTTA

hide sequence

RefSeq Acc Id:

XM_006254584 ⟹ XP_006254646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	25,680,169 - 25,890,998 (-)	NCBI
mRatBN7.2	18	25,405,461 - 25,615,391 (-)	NCBI
Rnor_6.0	18	26,570,051 - 26,788,586 (-)	NCBI
Rnor_5.0	18	26,283,764 - 26,500,216 (-)	NCBI

Sequence:

show sequence

TCGCTCTGTAGACCAGGCTGGCCTCGAACTCAGAGTGCTGGGGTTAAAGGCATGCATCAGTCTC
ATTTGGCGATTACAGGAAAGCTGCATTGCAGAAAAGCCTCCACAGTGAGGTATTAAAACCCAGA
GGTTTAAGTTGGAGTTTTACAGTAGAATTCAAAGTTGCATATAGAATTTGATTAAAACCTCAGA
GCCTGCCTCAATATCAGAAACATTGGAAGATAAACTAGGGTTTTACTGGCAGTTGGGCGCATCC
GATGTTTCCTGGAAGTTGGGAAAAGCTAAGTTTCATACAGAAGTCCTTCGTGGGAAGTCACTGT
GTAGACAACTCTGCCAACTGTTGCAAAACTGTTTTTTTCTGTGTTGGGGACACGAAGTTTTTAC
TTAGGTTTTAAGCAAAAAAAATTTTTCTTTTGACTTTTGACTATGCAAGCTAACAAGTGGTAGA
GGAGCAAATTCATAGTTGATGTTAAGTTCTTTCTCGTTCTATTCTTTCATACAGAACAAAGTTC
TGCAAGGCACCCATCTGCTACGCCCGCTCCGCGGTGCGTCCTCCCTTTTGCGGTCCGTGACTGT
GACTAGTACTAATTTGCCCCTGCTTCCAAGTAAGAGAACTCAGACTGCACCTGCTCCCAGGGCC
AGCGGGGGTCCTGGGCCTTCCACGCTCGGCTTGAATTGCTCGTGCACGGACACGACGACCCGCC
AGGGGTCACTGTAGCCTCAGAGCTATTGTGCCCACCAGTGCCTGGCCCCGGCTGGCCTCGCGGA
GGGCGTGGGACTGGGACCGCAGAACACTGGGGTCGGAGCAGAACTGCGCCTTGCCTGCCTGAAG
CCAACCTTCCGGTCTCCCAGGGAAACGAACGCGGTGACCTCGCGACGGCCGGGCTACTCGGCAC
AGCGCACGCGTTCTCGCCGGGACCTGCAGGCACCCAGCCAGACTGACCACCTCCGCCCCGCCCT
CCGCCCCCGGCTGAGACCCCGCCCTGAAGGGGGGCGCTCGGGTCACCGTCCCGGGGCTATCCAG
CTTCAGATCCGAGGCTTTTTGCCGACACCCCGGGCCGGGACCCGCTGTACCTGGGCTGCTCCCT
CCAGGGCCCCGCCCTGCGCGCCACCAAGAACTTTCCCTGGAGCCTCGGAGGCCTGGCGCCCCGG
GTTCTGCCGCGCCGCCCGCAGGTCCTCAGACACCCGGCTTTTCCAGGACGTTCGGGGAAGGAAG
CTTGAACTTGGCCATCTCCGCGGGATGAGTTCGGGGACCTTCGGACAGAAGCTACAGGCCGCGA
CAAGCTGACCTCCCCCGGTCGCCGCCCCATTCTTCAGAAGAGGAGCTGCTGCCGCAGGATGCGC
GGGGACGCGCCACCCCTGGTTCCCAGTTCTGCGGACGCTTCTCGGGCGACTCCGGGCTCTTGAC
GCCCCGAGGCGCGCTCGCCCTCCCGCCTTCGCTGTCCGAGCCTCTCGGGGTGCCTTCGGCTCAC
CATAGAACCCCAGACCTTACCCTCACCCGGGGGGCCCCACCCAGACCCGCGCCTCTCGCCCTCT
ACACGGCGCGCACAATAAATTAATGCTTCGCGCTTGAGGGGAGGCGGCGGCGGGCGCCGCGGTC
GCTGCTCTCGCCTGACTGGAGACGCTTTCAGCCGACATGGGCTGTTTCTGCGCCGTTCCGGAAG
AATTTTACTGCGAAGTTTTGCTCCTGGACGAGTCCAAGCTCACCCTCACCACCCAGCACCAGGG
CATCAAGAAGTCAACCAAAGGTTCCGTTGTCCTTGACCATGTTTTCCGTCACGTAAACCTCGTG
GAGATAGATTATTTTGGTCTGCGATACTGCGACAGAAGCCATCAGACATATTGGCTGGATCCCG
CAAAAACTCTTGCAGAACACAAGGAACTAATCAACACTGGACCTCCGTATACTTTGTATTTTGG
TATTAAATTCTATGCTGAAGATCCATGTAAGCTCAAAGAAGAGATAACCAGATATCAGTTTTTC
TTACAGGTGAAGCAAGATGCCCTTCAGGGCCGTCTGCCTTGTCCTGTCAATATTGCCGCTCAGC
TGGGAGCCTATGCCATCCAGGCCGAACTGGGAGACCACGACCCATGTAAGCACACTGCGGGGTA
CGTGTCGGAGTACCGGTTTGTTCCTGATCAGAAGGAAGAACTGGAAGAATCTATAGAAAGGATT
CACAAGACTCTAATGGGTCAGGCTCCTTCCGAAGCTGAGCTGAATTACTTGAGGACTGCGAAAT
CCCTGGAGATGTACGGCGTTGACCTCCATCCTGTCTATGGAGAAAATAAGTCCGAGTATTTCTT
AGGATTGACTCCAGTGGGTGTTGTCGTCTATAAGAATAAAAAGCAAGTGGGGAAGTATTTCTGG
CCTCGGATTACCAAGGTGCACTTCAAGGAAACCCAGTTTGAACTCAGAGTCTTGGGAAAAGACT
GTAATGAGACCTCGTTCTTTTTTGAAGCTCGGAGCAAAACTGCTTGCAAACACCTCTGGAAATG
CAGTGTGGAGCACCATACATTTTTCAGGATGCCAGAAACAGAGTCAAATTCACTGTCAAGAAAA
CTCAGCAAGTTTGGGTCCATAAGTTATAAACACCGATACAGTGGCAGGACAGCTTTGCAAATGA
GCCGAGATCTTTCCATCCAACTTCCCCGGCCCAACCAGAACGTGGTGAGAAGTCGAAGCAAGAC
TTACCCCAAGAGGGTAGCACAGACGCAGCCCGCTGGATCCAACAGCATCAATCGGATGACTGCA
AACTTGGAAAACGGGGAGAATGAAGGAACCACCAAGATCATTGCGCCCTCACCAGTGAAAAGTT
TTAAGAAAGCAAAGAATGAAAACAGTCCTGACCCCCAAAGAAGCAAATCTCATGCACCATGGGA
AGAAAACGGACCCCAGAGTGGACTCTACAACTCCCCCAGTGACCGCACTAAGTCACCAAAGTTT
CCCTGTACCCGGCAGCGCAACCTCTCCTGTGGCAGCGACAATGACTCCTCGCAGCCAATGAGGC
GAAGGAAGGCTCACCACAGTGGGGAAGACTCGGATCTAAAGCAACGGAGGAGGTCACGCTCACG
CTGTAACACGAGCAGTGGTAGTGAGTCAGAAAATTCTAACAGAGAACACCGGAAGAAGAGAAAC
AGAATACGACAGGAGAATGACATGGTTGATTCAGCGCCTCAGTGGGAAGCCGTGTTAAGGAGAC
AGAAGGAGAAAAACCAAGTGGATCCTAACAACCGGAGATCCAGGCACAGATCTCGCTCGAGAAG
TCCTGATATCCAAGCAAAAGAAGAACTGTGGAAGCATATCCAGAAGGAGCTTGTGGACCCATCC
GGGTTGTCAGAGGAGCAGTTGAAAGAGATCCCATACACTAAAGTGGAGACTCAGGGTGACCCTG
TCCGCATCAGGCATTCGCATTCCCCAAGGAGTTACCGGCAGTACCGCAGATCCCAGTGCTCAGA
CGGAGAGCGATCCGTCCTCTCGGAAGTGAACTCAAAGACAGATCTTGTACCACCACTTCCAGTC
ACCCGTTCCTCAGATGCTCAGGGGTCTGGAGGCTCTACAGTTCATCAGAGAAGAAACGGGTCTA
AAGACAGCCTGATTGAAGAAAAATCTCAGCTTTCTACAACCAACCTGGCTGGAAAACATACAGC
AAAAACAATAAAAACCATCCAGGCTGCTCGGCTCAAGACAGACGTCACTGGGTGAAGGGGTGTA
GGGAAACGTGTGTCACTGGTACTTTTCAAACTGTGAATTAGATAATTACCCACGTATCTTGGAC
TCGTGTCCTTAGCACAAGAAAATTGGCATCTTTTAAGGATTTATGTACAGCATTCTTGTGCTGT
GGGCCTTTGGAAGGACAACCTTATGAACTCACTGGATACCACCATCTCTTTCCTGAAATTCTGA
CCATCCAACTGTGTTTCTCACCTCTCCACCACAGCCAAGACCAGAGGCTTCAGATGAGCCCCTG
GACTCCCAGCTGCCATCAGACTGTAGTGACTTTTATTCCCACAACTGTTTGTAATATTGTATTT
TGTGACATTTAAGTCCCAATGGTTATTTACAAATAATGTAAAAAGCTGTTAAGTGTTGATTTGA
ATTTAAGTGTCCTTGTCTTGTGTTTTCTGAGGCAAAAAAAAAAAAAAAAAAGCCCATGTAGGCA
TTGTCCCCTACCCTACACACCTGTCCACCCATGTTTCCAAGTTTTGGATCTTTACCTCTGTGTG
ATGGCTTTTCAGACAACAGTACTCAGAAAGAACCTTCTGTATCTTGCCAGTGGCTGTGTGTGAC
TCATCCTTTCCTGTAGCAATCTCTAGCTTCCTTGAAATTCTCCATTCTTATTATTTAAGCCTCT
GCTGGGCTCAAGAGCTATGTTGATCTTGTAGCCAGTTTTATTACTACCTAGTGATTCAACTGGG
GGTCGACTGCTCAGTGACACAGTGCTTGCCAAACTCTACCCTCAACTCCTGAGGTTCAACTGTG
ACCTTTGTCCCCCTGCCCCCAAAACTAAAACCAAATCTAAATATTCCTTCCCACGCAGTGTCCT
GTCTCAATGCCTTCATACACTGCTTTAATTCTAGGCTGCCTCTACACCCCACATCCTTTGCAGC
TTACCTCACTGTGGTACCTTCTTCGGCCCACCTGCGTGGAACTGCTTTGCTCCCCATCTTGCTT
TAATAAAACCTAAGCCTTA

hide sequence

RefSeq Acc Id:

XM_039096875 ⟹ XP_038952803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	25,680,169 - 25,773,322 (-)	NCBI
mRatBN7.2	18	25,405,461 - 25,499,168 (-)	NCBI

RefSeq Acc Id:

XM_063277376 ⟹ XP_063133446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	25,680,169 - 25,890,998 (-)	NCBI

RefSeq Acc Id:

XM_063277377 ⟹ XP_063133447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	25,680,169 - 25,829,396 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100867	(Get FASTA)	NCBI Sequence Viewer
	XP_006254645	(Get FASTA)	NCBI Sequence Viewer
	XP_006254646	(Get FASTA)	NCBI Sequence Viewer
	XP_038952803	(Get FASTA)	NCBI Sequence Viewer
	XP_063133446	(Get FASTA)	NCBI Sequence Viewer
	XP_063133447	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68858	(Get FASTA)	NCBI Sequence Viewer
	EDL76208	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032777.6
	ENSRNOP00000069707.2
	ENSRNOP00000091694.1

RefSeq Acc Id:

NP_001100867 ⟸ NM_001107397

- UniProtKB:

B5DEZ0 (UniProtKB/TrEMBL), F1LQE5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGQAPSEAELNYLRTAKSLEMYGVDLHPVYGENKSEYFLGLTPVGVVVYKNKKQVGKYFWPRIT
KVHFKETQFELRVLGKDCNETSFFFEARSKTACKHLWKCSVEHHTFFRMPETESNSLSRKLSKF
GSISYKHRYSGRTALQMSRDLSIQLPRPNQNVVRSRSKTYPKRVAQTQPAGSNSINRMTANLEN
GENEGTTKIIAPSPVKSFKKAKNENSPDPQRSKSHAPWEENGPQSGLYNSPSDRTKSPKFPCTR
QRNLSCGSDNDSSQPMRRRKAHHSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQ
ENDMVDSAPQWEAVLRRQKEKNQVDPNNRRSRHRSRSRSPDIQAKEELWKHIQKELVDPSGLSE
EQLKEIPYTKVETQGDPVRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTRSS
DAQGSGGSTVHQRRNGSKDSLIEEKSQLSTTNLAGKHTAKTIKTIQAARLKTDVTG

hide sequence

RefSeq Acc Id:	XP_006254646 ⟸ XM_006254584
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ATD3 (UniProtKB/TrEMBL), A0A0G2JW20 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCFCAVPEEFYCEVLLLDESKLTLTTQHQGIKKSTKGSVVLDHVFRHVNLVEIDYFGLRYCDR SHQTYWLDPAKTLAEHKELINTGPPYTLYFGIKFYAEDPCKLKEEITRYQFFLQVKQDALQGRL PCPVNIAAQLGAYAIQAELGDHDPCKHTAGYVSEYRFVPDQKEELEESIERIHKTLMGQAPSEA ELNYLRTAKSLEMYGVDLHPVYGENKSEYFLGLTPVGVVVYKNKKQVGKYFWPRITKVHFKETQ FELRVLGKDCNETSFFFEARSKTACKHLWKCSVEHHTFFRMPETESNSLSRKLSKFGSISYKHR YSGRTALQMSRDLSIQLPRPNQNVVRSRSKTYPKRVAQTQPAGSNSINRMTANLENGENEGTTK IIAPSPVKSFKKAKNENSPDPQRSKSHAPWEENGPQSGLYNSPSDRTKSPKFPCTRQRNLSCGS DNDSSQPMRRRKAHHSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQENDMVDSA PQWEAVLRRQKEKNQVDPNNRRSRHRSRSRSPDIQAKEELWKHIQKELVDPSGLSEEQLKEIPY TKVETQGDPVRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTRSSDAQGSGGS TVHQRRNGSKDSLIEEKSQLSTTNLAGKHTAKTIKTIQAARLKTDVTG hide sequence

RefSeq Acc Id:	XP_006254645 ⟸ XM_006254583
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ATD3 (UniProtKB/TrEMBL), A0A0G2JW20 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCFCAVPEEFYCEVLLLDESKLTLTTQHQGIKKSTKGSVVLDHVFRHVNLVEIDYFGLRYCDR SHQTYWLDPAKTLAEHKELINTGPPYTLYFGIKFYAEDPCKLKEEITRYQFFLQVKQDALQGRL PCPVNIAAQLGAYAIQAELGDHDPCKHTAGYVSEYRFVPDQKEELEESIERIHKTLMGQAPSEA ELNYLRTAKSLEMYGVDLHPVYGENKSEYFLGLTPVGVVVYKNKKQVGKYFWPRITKVHFKETQ FELRVLGKDCNETSFFFEARSKTACKHLWKCSVEHHTFFRMPETESNSLSRKLSKFGSISYKHR YSGRTALQMSRDLSIQLPRPNQNVVRSRSKTYPKRVAQTQPAGSNSINRMTANLENGENEGTTK IIAPSPVKSFKKAKNENSPDPQRSKSHAPWEENGPQSGLYNSPSDRTKSPKFPCTRQRNLSCGS DNDSSQPMRRRKAHHSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQENDMVDSA PQWEAVLRRQKEKNQVDPNNRRSRHRSRSRSPDIQAKEELWKHIQKELVDPSGLSEEQLKEIPY TKVETQGDPVRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTRSSDAQGSGGS TVHQRRNGSKDSLIEEKSQLSTTNLAGKHTAKTIKTIQAARLKTDVTG hide sequence

Ensembl Acc Id:

ENSRNOP00000032777 ⟸ ENSRNOT00000038247

Ensembl Acc Id:

ENSRNOP00000069707 ⟸ ENSRNOT00000086729

RefSeq Acc Id:	XP_038952803 ⟸ XM_039096875
- Peptide Label:	isoform X3
- UniProtKB:	F1LQE5 (UniProtKB/TrEMBL), B5DEZ0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091694 ⟸ ENSRNOT00000099986

RefSeq Acc Id:	XP_063133446 ⟸ XM_063277376
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JW20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133447 ⟸ XM_063277377
- Peptide Label:	isoform X3
- UniProtKB:	B5DEZ0 (UniProtKB/TrEMBL), F1LQE5 (UniProtKB/TrEMBL)

Protein Domains

FERM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DEZ0-F1-model_v2	AlphaFold	B5DEZ0	1-504	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306034	AgrOrtholog
BioCyc Gene	G2FUF-7979	BioCyc
Ensembl Genes	ENSRNOG00000026050	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038247.7	UniProtKB/TrEMBL
	ENSRNOT00000086729.2	UniProtKB/TrEMBL
	ENSRNOT00000099986.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.80.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	Band4.1-like4A	UniProtKB/TrEMBL
	Band_41_domain	UniProtKB/TrEMBL
	Ez/rad/moesin-like	UniProtKB/TrEMBL
	FERM-adjacent	UniProtKB/TrEMBL
	FERM/acyl-CoA-bd_prot_sf	UniProtKB/TrEMBL
	FERM_2	UniProtKB/TrEMBL
	FERM_central	UniProtKB/TrEMBL
	FERM_CS	UniProtKB/TrEMBL
	FERM_domain	UniProtKB/TrEMBL
	FERM_N	UniProtKB/TrEMBL
	FERM_PH-like_C	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/TrEMBL
KEGG Report	rno:307514	UniProtKB/TrEMBL
NCBI Gene	307514	ENTREZGENE
PANTHER	4.1 G PROTEIN	UniProtKB/TrEMBL
	PTHR23280:SF4	UniProtKB/TrEMBL
Pfam	FERM_C	UniProtKB/TrEMBL
	FERM_M	UniProtKB/TrEMBL
	FERM_N	UniProtKB/TrEMBL
	PF08736	UniProtKB/TrEMBL
PhenoGen	Epb41l4a	PhenoGen
PRINTS	BAND41	UniProtKB/TrEMBL
	ERMFAMILY	UniProtKB/TrEMBL
PROSITE	FERM_1	UniProtKB/TrEMBL
	FERM_2	UniProtKB/TrEMBL
	FERM_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000026050	RatGTEx
SMART	B41	UniProtKB/TrEMBL
	FERM_C	UniProtKB/TrEMBL
	SM01195	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF47031	UniProtKB/TrEMBL
	SSF54236	UniProtKB/TrEMBL
UniProt	A0A0G2JW20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATD3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8J8XH40_RAT	UniProtKB/TrEMBL
	B5DEZ0	ENTREZGENE, UniProtKB/TrEMBL
	F1LQE5	ENTREZGENE
UniProt Secondary	F1LQE5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Epb4.1l4a	erythrocyte protein band 4.1-like 4a	Epb4.1l4a_predicted	erythrocyte protein band 4.1-like 4a (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Epb4.1l4a_predicted	erythrocyte protein band 4.1-like 4a (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar