Mrps24 (mitochondrial ribosomal protein S24) - Rat Genome Database

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Gene: Mrps24 (mitochondrial ribosomal protein S24) Rattus norvegicus
Analyze
Symbol: Mrps24
Name: mitochondrial ribosomal protein S24
RGD ID: 1306014
Description: Predicted to be located in mitochondrion and ribosome. Predicted to be part of ribonucleoprotein complex. Orthologous to human MRPS24 (mitochondrial ribosomal protein S24); INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 28S ribosomal protein S24, mitochondrial; DD6A4-3; LOC305493; small ribosomal subunit protein uS3m
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,798,649 - 84,802,777 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21480,584,671 - 80,588,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,584,673 - 80,588,871 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1484,986,478 - 84,990,606 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,226,591 - 86,230,719 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,675,915 - 82,680,043 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,947,763 - 85,951,891 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,947,765 - 85,951,899 (-)Ensemblrn6Rnor6.0
Rnor_5.01486,640,004 - 86,644,132 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41486,357,051 - 86,361,179 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1479,469,587 - 79,473,715 (-)NCBICelera
RGSC_v3.11486,386,823 - 86,411,234 (-)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:18614015   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Mrps24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,798,649 - 84,802,777 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21480,584,671 - 80,588,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,584,673 - 80,588,871 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1484,986,478 - 84,990,606 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,226,591 - 86,230,719 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,675,915 - 82,680,043 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,947,763 - 85,951,891 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,947,765 - 85,951,899 (-)Ensemblrn6Rnor6.0
Rnor_5.01486,640,004 - 86,644,132 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41486,357,051 - 86,361,179 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1479,469,587 - 79,473,715 (-)NCBICelera
RGSC_v3.11486,386,823 - 86,411,234 (-)NCBI
Cytogenetic Map14q21NCBI
MRPS24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38743,866,558 - 43,869,517 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl743,866,557 - 43,869,893 (-)Ensemblhg38GRCh38
GRCh37743,906,157 - 43,909,116 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36743,872,682 - 43,875,670 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34743,679,396 - 43,682,337NCBI
Celera743,896,023 - 43,899,010 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef743,791,199 - 43,794,186 (-)NCBIHuRef
CHM1_1743,910,051 - 43,913,039 (-)NCBICHM1_1
T2T-CHM13v2.0744,024,848 - 44,027,808 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2743,945,658 - 43,948,645 (-)NCBI
Mrps24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,653,982 - 5,657,701 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,653,983 - 5,665,680 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38115,703,982 - 5,707,701 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,703,983 - 5,715,680 (-)Ensemblmm10GRCm38
MGSCv37115,603,986 - 5,607,702 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36115,603,986 - 5,607,688 (-)NCBIMGSCv36mm8
Celera116,194,491 - 6,198,196 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
Mrps24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,009,523 - 8,015,863 (+)Ensembl
ChiLan1.0NW_0049554568,009,523 - 8,012,920 (+)NCBIChiLan1.0ChiLan1.0
MRPS24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2644,580,304 - 44,583,710 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1792,905,416 - 92,908,451 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0740,381,723 - 40,384,745 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1740,427,349 - 40,430,335 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl740,427,349 - 40,430,335 (+)EnsemblpanPan2panpan1.1
MRPS24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha161,929,052 - 1,931,446 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01614,930,562 - 14,932,956 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,930,154 - 14,932,963 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01614,561,671 - 14,564,055 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,542,319 - 14,544,713 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mrps24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511899,712,290 - 99,718,013 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647818,924,489 - 18,927,214 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647818,924,321 - 18,927,979 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,825,782 - 48,830,609 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11848,825,747 - 48,872,294 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21853,538,603 - 53,541,613 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12114,717,207 - 14,720,541 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660627,792,690 - 7,796,091 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,040,260 - 8,042,530 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247408,040,096 - 8,043,080 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mrps24
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11174,667,555 - 74,671,358 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mrps24
59 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:36
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000016207
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat

Markers in Region
RH131092  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,584,883 - 80,585,076 (+)MAPPERmRatBN7.2
Rnor_6.01485,947,976 - 85,948,168NCBIRnor6.0
Rnor_5.01486,640,217 - 86,640,409UniSTSRnor5.0
RGSC_v3.41486,357,264 - 86,357,456UniSTSRGSC3.4
Celera1479,469,800 - 79,469,992UniSTS
RH 3.4 Map14574.7UniSTS
Cytogenetic Map14q21UniSTS
BF393136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,588,072 - 80,588,189 (+)MAPPERmRatBN7.2
Rnor_6.01485,951,163 - 85,951,279NCBIRnor6.0
Rnor_5.01486,643,404 - 86,643,520UniSTSRnor5.0
RGSC_v3.41486,360,451 - 86,360,567UniSTSRGSC3.4
Celera1479,472,987 - 79,473,103UniSTS
RH 3.4 Map14575.0UniSTS
Cytogenetic Map14q21UniSTS
BE120653  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,586,359 - 80,586,524 (+)MAPPERmRatBN7.2
Rnor_6.01485,949,452 - 85,949,616NCBIRnor6.0
Rnor_5.01486,641,693 - 86,641,857UniSTSRnor5.0
RGSC_v3.41486,358,740 - 86,358,904UniSTSRGSC3.4
Celera1479,471,276 - 79,471,440UniSTS
RH 3.4 Map14574.6UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016207   ⟹   ENSRNOP00000016207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,584,673 - 80,588,819 (-)Ensembl
Rnor_6.0 Ensembl1485,947,765 - 85,951,891 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080848   ⟹   ENSRNOP00000074987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,584,673 - 80,588,749 (-)Ensembl
Rnor_6.0 Ensembl1485,947,812 - 85,951,899 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110868   ⟹   ENSRNOP00000091744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,584,808 - 80,588,871 (-)Ensembl
RefSeq Acc Id: NM_001077659   ⟹   NP_001071127
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81484,798,649 - 84,802,777 (-)NCBI
mRatBN7.21480,584,671 - 80,588,801 (-)NCBI
Rnor_6.01485,947,763 - 85,951,891 (-)NCBI
Rnor_5.01486,640,004 - 86,644,132 (-)NCBI
RGSC_v3.41486,357,051 - 86,361,179 (-)RGD
Celera1479,469,587 - 79,473,715 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001071127 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI57808 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001071127   ⟸   NM_001077659
- UniProtKB: A9UMV2 (UniProtKB/TrEMBL),   A6IKN0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074987   ⟸   ENSRNOT00000080848
Ensembl Acc Id: ENSRNOP00000016207   ⟸   ENSRNOT00000016207
Ensembl Acc Id: ENSRNOP00000091744   ⟸   ENSRNOT00000110868

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K9G3-F1-model_v2 AlphaFold A0A0G2K9G3 1-179 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699467
Promoter ID:EPDNEW_R9983
Type:multiple initiation site
Name:Mrps24_1
Description:mitochondrial ribosomal protein S24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01485,951,904 - 85,951,964EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306014 AgrOrtholog
BioCyc Gene G2FUF-15130 BioCyc
Ensembl Genes ENSRNOG00000011979 Ensembl
IMAGE_CLONE IMAGE:8375708 IMAGE-MGC_LOAD
InterPro MRPS24 UniProtKB/TrEMBL
KEGG Report rno:498406 UniProtKB/TrEMBL
MGC_CLONE MGC:187230 IMAGE-MGC_LOAD
NCBI Gene 498406 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S24, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR21244 UniProtKB/TrEMBL
Pfam MRP-S24 UniProtKB/TrEMBL
PhenoGen Mrps24 PhenoGen
RatGTEx ENSRNOG00000011979 RatGTEx
UniProt A6IKN0 ENTREZGENE, UniProtKB/TrEMBL
  A9UMV2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mrps24  mitochondrial ribosomal protein S24   Mrps24_predicted  mitochondrial ribosomal protein S24 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mrps24_predicted  mitochondrial ribosomal protein S24 (predicted)      Symbol and Name status set to approved 70820 APPROVED