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Gene: Armc12 (armadillo repeat containing 12) Rattus norvegicus

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Symbol:

Armc12

Name:

armadillo repeat containing 12

RGD ID:

1306008

Description:

Predicted to be involved in positive regulation of cell growth and sperm mitochondrial sheath assembly. Predicted to be located in mitochondrial outer membrane. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in spermatogenic failure 90. Orthologous to human ARMC12 (armadillo repeat containing 12); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

armadillo repeat-containing protein 12; hypothetical protein LOC294301; LOC294301; RGD1306008; similar to RIKEN cDNA 4930511I11; uncharacterized protein LOC294301

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	6,589,573 - 6,600,059 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	6,589,563 - 6,600,056 (+)	Ensembl				GRCr8
mRatBN7.2	20	6,587,859 - 6,598,355 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	6,587,859 - 6,598,352 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	7,301,048 - 7,311,664 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	6,662,882 - 6,673,499 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	7,142,006 - 7,152,439 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	8,109,691 - 8,120,183 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	8,109,635 - 8,120,180 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	10,308,966 - 10,319,458 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	6,769,884 - 6,780,377 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	8,144,369 - 8,154,820 (+)	NCBI		Celera
RGSC_v3.1	20	6,770,117 - 6,780,418 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

spermatogenic failure 90 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

diquat (ISO)

ethylparaben (ISO)

fulvestrant (ISO)

methoxychlor (EXP)

paracetamol (ISO)

silicon dioxide (ISO)

sodium fluoride (ISO)

tetrachloroethene (ISO)

trichloroethene (EXP)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

flagellated sperm motility (ISO)

positive regulation of cell growth (IEA,ISO)

sperm mitochondrial sheath assembly (IEA,ISO)

Cellular Component

mitochondrial outer membrane (ISO)

mitochondrion (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21630459

Genomics

Comparative Map Data

Armc12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	6,589,573 - 6,600,059 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	6,589,563 - 6,600,056 (+)	Ensembl				GRCr8
mRatBN7.2	20	6,587,859 - 6,598,355 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	6,587,859 - 6,598,352 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	7,301,048 - 7,311,664 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	6,662,882 - 6,673,499 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	7,142,006 - 7,152,439 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	8,109,691 - 8,120,183 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	8,109,635 - 8,120,180 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	10,308,966 - 10,319,458 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	6,769,884 - 6,780,377 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	8,144,369 - 8,154,820 (+)	NCBI		Celera
RGSC_v3.1	20	6,770,117 - 6,780,418 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

ARMC12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	35,731,524 - 35,749,079 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	35,737,032 - 35,749,079 (+)	Ensembl			hg38	GRCh38
GRCh37	6	35,704,809 - 35,716,856 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	35,812,837 - 35,824,663 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	35,812,836 - 35,824,663	NCBI
Celera	6	37,259,440 - 37,271,267 (+)	NCBI		Celera
Cytogenetic Map	6	p21.31	NCBI
HuRef	6	35,422,647 - 35,434,414 (+)	NCBI		HuRef
CHM1_1	6	35,703,507 - 35,715,333 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	35,551,853 - 35,569,445 (+)	NCBI		T2T-CHM13v2.0

Armc12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	28,749,835 - 28,757,949 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	28,749,780 - 28,758,084 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	28,530,861 - 28,538,975 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	28,530,806 - 28,539,110 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	28,667,806 - 28,675,920 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	28,258,450 - 28,266,696 (+)	NCBI		MGSCv36	mm8
Celera	17	29,084,741 - 29,092,791 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	14.74	NCBI

Armc12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	3,592,085 - 3,600,959 (+)	Ensembl
ChiLan1.0	NW_004955437	3,591,343 - 3,599,887 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARMC12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	50,205,668 - 50,218,753 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	46,072,652 - 46,085,400 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	35,299,170 - 35,311,231 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	36,500,828 - 36,512,824 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	36,500,828 - 36,512,824 (+)	Ensembl			panPan2	panpan1.1

ARMC12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	4,868,831 - 4,879,801 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	4,869,774 - 4,879,793 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	4,884,085 - 4,895,222 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	5,210,677 - 5,221,818 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	5,211,677 - 5,221,807 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	4,866,533 - 4,877,668 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	4,945,650 - 4,956,778 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	5,046,021 - 5,057,189 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Armc12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	40,398,547 - 40,422,216 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	23,537,987 - 23,555,667 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	23,538,020 - 23,562,126 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARMC12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	31,586,797 - 31,603,600 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	31,583,544 - 31,601,790 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	36,508,170 - 36,529,669 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARMC12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	36,368,789 - 36,392,119 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	36,368,832 - 36,388,749 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	35,655,193 - 35,668,194 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Armc12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	21,788,031 - 21,795,807 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	21,787,998 - 21,795,825 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Armc12
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	5,320,902 - 5,331,061 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Armc12
75 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	51
Count of miRNA genes:	51
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000000609
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
61474	Eae1	Experimental allergic encephalomyelitis QTL 1	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	20	1	6693431	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3626323	10078622	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	6693431	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3626323	9244918	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

D20Got128

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	6,591,134 - 6,591,313 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	8,112,963 - 8,113,141	NCBI	Rnor6.0
Rnor_5.0	20	10,312,238 - 10,312,416	UniSTS	Rnor5.0
RGSC_v3.4	20	6,773,156 - 6,773,334	UniSTS	RGSC3.4
Celera	20	8,147,607 - 8,147,785	UniSTS
Cytogenetic Map	20	p12	UniSTS

AV041658

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	6,598,001 - 6,598,103 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	8,119,830 - 8,119,931	NCBI	Rnor6.0
Rnor_5.0	20	10,319,105 - 10,319,206	UniSTS	Rnor5.0
RGSC_v3.4	20	6,780,024 - 6,780,125	UniSTS	RGSC3.4
Celera	20	8,154,467 - 8,154,568	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
2	6	1	17	15	18	8	17	8	1	39	22	16	4	38	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001113777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000609 ⟹ ENSRNOP00000000609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	6,589,563 - 6,600,056 (+)	Ensembl
mRatBN7.2 Ensembl	20	6,587,859 - 6,598,352 (+)	Ensembl
Rnor_6.0 Ensembl	20	8,109,635 - 8,120,180 (+)	Ensembl

RefSeq Acc Id:

NM_001113777 ⟹ NP_001107249

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,589,573 - 6,600,059 (+)	NCBI
mRatBN7.2	20	6,587,859 - 6,598,355 (+)	NCBI
Rnor_6.0	20	8,109,691 - 8,120,183 (+)	NCBI
Rnor_5.0	20	10,308,966 - 10,319,458 (+)	NCBI
RGSC_v3.4	20	6,769,884 - 6,780,377 (+)	RGD
Celera	20	8,144,369 - 8,154,820 (+)	RGD

Sequence:

show sequence

TGAAGACATGGGTAAGACCATTCCCTCGTACCTGGAGCAACTGGACCTCCGCAAAGGCTTCATA
GGCCTGGCTACAGGTGCCGGGGCCATATACCTGCTGTACAAGGCCATCAGAGCTGGCTTAAAGT
GTCAGTCACCGCTCTGTTCCGACTCACCTATCTGCATTGCCCGCCTGGCCATAGAGAGAGAGCG
CCACGGGCGGGACTCGGGTGAGATTCGAAGACTTCTCCACTCTCTAGAGTGCAAACACGATGCA
TATACCAAAAGCATGGTCCTTCATAGCATCACCCGCTGCGTGTACTTGCTGGAAGCTGAGGCCT
CTGCTTGTACATTGGATGACATCAATTTGATCGCTGAAATGCTGGATGACAAGGACAACAGTGT
CAAAATCCAAGCTCTGAACGCACTTAAGGCTTTCTCTGGCATCAGGAAATTCAGACTCGTCATT
CAGGAACATTGCATCAAGGTGCTGGAACTGATTTCCACCATCTGGGACATGGAGCTGCACGTGT
CTGGCCTCCGACTGCTCAACAGCCTCCCGCTACCTGACTACGTTCACCCACAGCTGCGGCGGGT
GATGCCTGCCCTGATGGAGATCATACAGTCAGACTGTGTTCTGGCACAGGTCCAAGCTGTCCGC
CTCCTGAGTTACCTGTCACAGAAGAACGACCTCCTCTATGACATTCTCAACTGTCAGGTGCGTC
CCAACTTCCTGTGCCTCCTCCAGTGTTCGCAGCCGGGCAGTCTGCTATTCGAGGTGCTGGTGTT
TGCCGAGCGCTTGAGTGAGGGTCGGAACGCCAACCACTACCGAGCGGTAAAATGGCATTACAAC
GAGCAGTCCCTTCACGAAGCCCTCTTTGGGGATGAGTCCAGACTGGCAGACCGACTGCTTTCCC
TGGTCATCCACCCTGAGGAGGAAGTTCAGATCCAGGCCTGCAAAGTCATAGTGAGCTTGCAGTG
TCCTCAGGACCTGGGATGCCGACCCTCTGTCTGCCGACCCAGCCATTCCTACTTTAAAAACGGA
GAGTAACATTAAGGAGATCCAATAAACGCGTACGGGAGGGAAGCTCGAGGCTTCTGGAAGCACG
CGTCTGTCCGTTGCCTCCCAGGGCCTGGGTGGAGGCTGGCCTCCGCCTAGGCTGTGGCCCAGCA
CCCCAAACACAGTCCACTTTCTGTGTTTGGGAGACTGACCCGCCCTTCTTTGCTGCTCTTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001107249	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58770	(Get FASTA)	NCBI Sequence Viewer
	EDL96927	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000609
	ENSRNOP00000000609.3

RefSeq Acc Id:

NP_001107249 ⟸ NM_001113777

- UniProtKB:

B0BNC7 (UniProtKB/TrEMBL), A6JJR1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGKTIPSYLEQLDLRKGFIGLATGAGAIYLLYKAIRAGLKCQSPLCSDSPICIARLAIERERHG
RDSGEIRRLLHSLECKHDAYTKSMVLHSITRCVYLLEAEASACTLDDINLIAEMLDDKDNSVKI
QALNALKAFSGIRKFRLVIQEHCIKVLELISTIWDMELHVSGLRLLNSLPLPDYVHPQLRRVMP
ALMEIIQSDCVLAQVQAVRLLSYLSQKNDLLYDILNCQVRPNFLCLLQCSQPGSLLFEVLVFAE
RLSEGRNANHYRAVKWHYNEQSLHEALFGDESRLADRLLSLVIHPEEEVQIQACKVIVSLQCPQ
DLGCRPSVCRPSHSYFKNGE

hide sequence

Ensembl Acc Id:

ENSRNOP00000000609 ⟸ ENSRNOT00000000609

Protein Domains

Armadillo repeat-containing

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BNC7-F1-model_v2	AlphaFold	B0BNC7	1-340	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701462

Promoter ID:

EPDNEW_R11985

Type:

multiple initiation site

Name:

Armc12_1

Description:

armadillo repeat containing 12

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	8,109,681 - 8,109,741	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306008	AgrOrtholog
BioCyc Gene	G2FUF-4418	BioCyc
Ensembl Genes	ENSRNOG00000000508	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000000609	ENTREZGENE
	ENSRNOT00000000609.7	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7115619	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Armc12	UniProtKB/TrEMBL
	DUF634	UniProtKB/TrEMBL
KEGG Report	rno:294301	UniProtKB/TrEMBL
MGC_CLONE	MGC:188058	IMAGE-MGC_LOAD
NCBI Gene	294301	ENTREZGENE
PANTHER	ARMADILLO REPEAT-CONTAINING PROTEIN 12	UniProtKB/TrEMBL
	PTHR47144	UniProtKB/TrEMBL
Pfam	DUF634	UniProtKB/TrEMBL
PhenoGen	Armc12	PhenoGen
RatGTEx	ENSRNOG00000000508	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	A6JJR1	ENTREZGENE, UniProtKB/TrEMBL
	B0BNC7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Armc12	armadillo repeat containing 12	RGD1306008	similar to RIKEN cDNA 4930511I11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1306008	similar to RIKEN cDNA 4930511I11	RGD1306008_predicted	similar to RIKEN cDNA 4930511I11 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1306008_predicted	similar to RIKEN cDNA 4930511I11 (predicted)	LOC294301_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC294301_predicted	similar to RIKEN cDNA 4930511I11 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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