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Gene: Tnn (tenascin N) Rattus norvegicus

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Symbol:

Tnn

Name:

tenascin N

RGD ID:

1306002

Description:

Predicted to enable identical protein binding activity and integrin binding activity. Predicted to be involved in several processes, including generation of neurons; negative regulation of neuron migration; and positive regulation of sprouting angiogenesis. Predicted to act upstream of or within axonogenesis. Predicted to be located in several cellular components, including CA3 pyramidal cell dendrite; hippocampal mossy fiber expansion; and neuronal cell body. Predicted to be part of tenascin complex. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human TNN (tenascin N); PARTICIPATES IN cell-extracellular matrix signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC304913; tenascin-N

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TNN (tenascin N)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Tnn (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tnn (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TNN (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TNN (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tnn (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TNN (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TNN (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tnn (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tnn (tenascin N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LMOD1 (leiomodin 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TNN (tenascin N)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tnn (tenascin N)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9593	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	T15B7.1	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG7668	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG10359	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	tnn	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tnn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tnn	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	74,852,586 - 74,919,789 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	74,852,586 - 74,919,789 (-)	Ensembl				GRCr8
mRatBN7.2	13	72,319,160 - 72,386,362 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	72,319,155 - 72,408,156 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	74,903,664 - 74,970,992 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	76,196,398 - 76,263,414 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	73,455,766 - 73,522,965 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	77,829,384 - 77,896,831 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	77,829,382 - 77,896,697 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	82,737,827 - 82,805,289 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	75,502,881 - 75,570,266 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	72,124,570 - 72,191,501 (-)	NCBI		Celera
RGSC_v3.1	13	75,517,069 - 75,584,416 (-)	NCBI
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3-chloropropane-1,2-diol (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

amphetamine (EXP)

atrazine (EXP)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

Benzo[ghi]perylene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

copper atom (EXP)

copper(0) (EXP)

DDT (EXP)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

diquat (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethyl methanesulfonate (ISO)

ethylparaben (ISO)

fipronil (EXP)

formaldehyde (ISO)

furan (EXP)

gentamycin (EXP)

isotretinoin (ISO)

manganese(II) chloride (EXP)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

monocrotaline (EXP)

N-methyl-4-phenylpyridinium (EXP)

nickel atom (ISO)

ozone (ISO)

panobinostat (ISO)

pentane-2,3-dione (EXP)

rotenone (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium fluoride (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (EXP,ISO)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonogenesis (ISO)

cell-matrix adhesion (IBA,ISO)

dendrite self-avoidance (ISO)

negative regulation of neuron migration (ISO)

neuron migration (ISO)

neuron projection extension (IBA,ISO)

osteoblast development (IEA,ISO)

positive regulation of neuron projection development (IEA,ISO)

positive regulation of sprouting angiogenesis (IEA,ISO)

regulation of bone development (IEA,ISO)

regulation of cell adhesion (IEA,ISO)

regulation of cell migration (IEA,ISO)

regulation of multicellular organismal development (IEA)

regulation of smooth muscle tissue development (IEA,ISO)

Cellular Component

CA3 pyramidal cell dendrite (IEA,ISO)

cell surface (IEA,ISO)

extracellular matrix (IBA,IEA,ISO)

extracellular space (IBA)

hippocampal mossy fiber expansion (IEA,ISO)

neuron projection (IEA,ISO)

neuronal cell body (IEA,ISO)

tenascin complex (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

integrin binding (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cell-extracellular matrix signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12812753	PMID:14531729	PMID:14709716	PMID:17395156

Genomics

Comparative Map Data

Tnn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	74,852,586 - 74,919,789 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	74,852,586 - 74,919,789 (-)	Ensembl				GRCr8
mRatBN7.2	13	72,319,160 - 72,386,362 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	72,319,155 - 72,408,156 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	74,903,664 - 74,970,992 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	76,196,398 - 76,263,414 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	73,455,766 - 73,522,965 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	77,829,384 - 77,896,831 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	77,829,382 - 77,896,697 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	82,737,827 - 82,805,289 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	75,502,881 - 75,570,266 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	72,124,570 - 72,191,501 (-)	NCBI		Celera
RGSC_v3.1	13	75,517,069 - 75,584,416 (-)	NCBI
Cytogenetic Map	13	q22	NCBI

TNN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	175,067,833 - 175,148,075 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	175,067,509 - 175,148,075 (+)	Ensembl			hg38	GRCh38
GRCh37	1	175,036,969 - 175,117,211 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	173,303,617 - 173,383,825 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	148,146,650 - 148,227,500 (+)	NCBI		Celera
Cytogenetic Map	1	q25.1	NCBI
HuRef	1	146,263,331 - 146,343,491 (+)	NCBI		HuRef
CHM1_1	1	176,459,912 - 176,540,082 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	174,421,562 - 174,501,817 (+)	NCBI		T2T-CHM13v2.0

Tnn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	159,912,599 - 159,981,242 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	159,912,599 - 159,981,150 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	160,085,029 - 160,153,692 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	160,085,029 - 160,153,580 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	162,015,160 - 162,083,706 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	161,921,713 - 161,990,219 (-)	NCBI		MGSCv36	mm8
Celera	1	162,494,761 - 162,563,991 (-)	NCBI		Celera
Cytogenetic Map	1	H2.1	NCBI
cM Map	1	69.4	NCBI

Tnn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	14,882,245 - 14,950,587 (+)	Ensembl
ChiLan1.0	NW_004955406	14,882,414 - 14,950,572 (+)	NCBI	ChiLan1.0	ChiLan1.0

TNN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	74,582,288 - 74,663,177 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	74,254,759 - 74,336,852 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	150,580,248 - 150,661,687 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	154,278,714 - 154,357,823 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	154,278,714 - 154,357,823 (+)	Ensembl			panPan2	panpan1.1

TNN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	24,246,481 - 24,342,686 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	24,230,930 - 24,308,520 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	23,770,811 - 23,834,479 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	23,993,486 - 24,056,007 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	23,993,195 - 24,090,712 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	23,906,564 - 23,969,038 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	23,997,539 - 24,060,030 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	24,142,115 - 24,205,062 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tnn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	95,238,548 - 95,311,948 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	13,086,297 - 13,158,490 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	13,085,325 - 13,149,840 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	117,137,250 - 117,243,815 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	117,174,743 - 117,244,041 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	128,940,226 - 128,962,928 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TNN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	54,107,304 - 54,231,578 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	54,108,039 - 54,178,478 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	55,678,022 - 55,800,362 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	6,872,964 - 6,932,920 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	6,872,134 - 6,933,419 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tnn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	39,371,084 - 39,438,157 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tnn
375 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	262
Count of miRNA genes:	171
Interacting mature miRNAs:	200
Transcripts:	ENSRNOT00000003452
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

D13Got52

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	74,902,671 - 74,902,795 (+)	Marker Load Pipeline
mRatBN7.2	13	72,369,240 - 72,369,364 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	77,879,603 - 77,879,726	NCBI	Rnor6.0
Rnor_5.0	13	82,788,063 - 82,788,186	UniSTS	Rnor5.0
RGSC_v3.4	13	75,553,102 - 75,553,226	RGD	RGSC3.4
RGSC_v3.4	13	75,553,103 - 75,553,226	UniSTS	RGSC3.4
Celera	13	72,174,412 - 72,174,535	UniSTS
RGSC_v3.1	13	75,567,291 - 75,567,414	RGD
RH 3.4 Map	13	450.2	RGD
RH 3.4 Map	13	450.2	UniSTS
RH 2.0 Map	13	534.1	RGD
Cytogenetic Map	13	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	8	44	130	48	48	17	89	17	6	249	161	11	108	50	86	31	7	7

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003452 ⟹ ENSRNOP00000003452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	74,852,586 - 74,919,789 (-)	Ensembl
mRatBN7.2 Ensembl	13	72,319,155 - 72,408,156 (-)	Ensembl
Rnor_6.0 Ensembl	13	77,829,382 - 77,896,697 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	77,887,021 - 77,887,673 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100671 ⟹ ENSRNOP00000076668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	74,852,586 - 74,919,789 (-)	Ensembl
mRatBN7.2 Ensembl	13	72,319,155 - 72,408,156 (-)	Ensembl

RefSeq Acc Id:

NM_001107189 ⟹ NP_001100659

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,852,586 - 74,919,789 (-)	NCBI
mRatBN7.2	13	72,319,160 - 72,386,362 (-)	NCBI
Rnor_6.0	13	77,829,389 - 77,896,741 (-)	NCBI
Rnor_5.0	13	82,737,827 - 82,805,289 (-)	NCBI
RGSC_v3.4	13	75,502,881 - 75,570,266 (-)	RGD
Celera	13	72,124,570 - 72,191,501 (-)	NCBI

Sequence:

show sequence

GAGAAGAAAGTGAGGGACAGACCAGCATTGAAGTCTACAGTACCAGGACCAGCTCACCGGAGGC
AGGAGGGTTGGGAGTGGTTCTCGACAGCCTCCCAGGCCTCCTGGAGTGTCTGATCCCTTTCTCC
AAGAATGGGTCTGTGGGGGATGCTTGCCTTCCCCCTGGGATTCCTGCTTGCTTCTGCGCTCCTG
GTGGCTTCAGCCCCAGCCAACCCAGAGACTCCTGGCTGCAGCCACAAAGACCAACAGGTCACCG
TTAGCCACACCTACAAGATTGATGTGCCCAAGTCTGCTCTGGTTCAAGTAGAGACGGACCCACA
GTCACTCAGTGATGATGGGACATCACTCTTGGTTCCTGGGGAGGATGGGGAGGAGCAGAACATT
ATCTTCAGGCACAACATCCGTCTTCAGACACCGCAGAAGAACTGTGAGTTGGCCGACAGTGTCC
AGGACCTGCTAGCCCGGGTGAAAAAGCTGGAGGAGGAGATGGCAGAGCTGAAGGAGCAGTGTAG
TACCAGCCGCTGCTGCCAGGGAGCTGCCGATCTGAGCCGTCACTGCAGTGGGCATGGGACCTTC
TTCGCTGAGACCTGCAGCTGCCACTGTGACCAGGGCTGGGAGGGCGCTGACTGTGAGCAGCCCA
CCTGTCCTGGGGCTTGCAGCGGCCACGGGCGGTGCGTGGATGGGCAATGCGTGTGTGATCAGCC
CTATGTGGGGGTCGACTGCGCCTACGCCGCCTGTCCCCAGGACTGCAGTGGGCATGGCGTGTGT
GTGCGGGGTGTCTGCCAGTGCCACAAGGACTTCACAGCTGAGGACTGCAGCGAGCAGCGCTGTC
CTGGCGACTGTAGTGGCAACGGCTTCTGTGACACTGGCGAGTGTTACTGCGAGATGGGCTTTAC
TGGCCCCGACTGTTCCCAGGTGGTGGCTCCTCAGGGCCTGCAGTTGCTCAAGAGCACCGAGAAC
TCCCTGCTGGTGAGCTGGGAGCCCTCCAGTGAGGTGGACCACTACCTGCTTAGCTACTACCCCT
TGGGGAAGGAGCAAGCTACAAAACAGGTCCGGGTGCCCAAGGAGCAACACACCTACGACATCAC
TGGTTTGCTGCCTGGCACCAAGTACATAGTCACCCTGCGTAACGTGAAGAAGGACATTTCCAGC
AGCCCTCAGCATCTCCTTGCCACCACAGATCTTGCTGTGGTGGGCACGGCCTGGGTAAATGAGG
AGACTGAGACATCTCTTGATGTGGAGTGGGAGAACCCTCTGACTGAGGTGGACTATTACAAGCT
TCGGTATGGCCCCTTAACAGGGCAGGAAGTGACTGAGGTCACTGTGCCCAAGAGCCGTGATCCC
AAGAGTAGATATGACATCACCGGTCTGCAGCCTGGAACGGAATATAAAATCACAGTTGTGCCCA
TAAGAGGAGATCTGGAGGGAAAGCCAATTCTCCTCAATGGCAGGACAGAAATTGATGGACCAAC
CAATGTGGTCACAAACCAAGTGACAGAAGACACAGCATCTGTTTCCTGGGATCCAGTGAGGGCT
GACATAGACAAGTATGTGGTGCGCTATATCTCCCATGATGGGGAGACCAAGGAGAAGGCAGTAC
CCAAGGACCAGAGCAGCACCGTTCTCACGGGCCTGAAGCCAGGAGAGGCCTACAAAGTCTTTGT
GTGGGCTGAGAGAGGCAACCAAGGCAGCAAGAAAGCAGACACCAAGGCCCTCACAGAAATTGAC
AGCCCAGAAAACCTGGTGACCGACCGTGTGACAGAGAACAGTCTCTCTGTCTCGTGGGACCCGG
TGGAGGCTGAAATAGACAGGTACGTGGTGAGCTACACTTCCGTGGATGGAGAGACAAAGCAGGT
TCCAGTGAGGAAGGACCAAAGCAGCACCGTCCTCACCGGCCTGAGTCCAGGTGTGGAGTACAAA
GTGTACGTGTGGGCAGAGAAAGGTGATCGAGAGAGCAAGAAGGCCAACACCAAGGCTCCCACAG
ACATTGACAGCCCCAAAAACTTGGTGACTGACCAGGTGACAGAGAACACTCTCAGTGTCTCTTG
GGACCCTGTTCAGGCCAACATTGACAGGTATATGGTGAGCTACACTTCTGCTGATGGAGAGACC
AGGGAGGTTCCAGTGCCTAAGGAGAAGAGCAGCACTGTTCTGACAGGCCTGAGGCCAGGCATGG
AGTACAAGGTTCACGTATGGGCCCAGAAGGGGACCCAGGAGAGCAGGAAGGCCAATACCAAGGC
CCCCACAGATATTGATGGCCCCAAAAACCTAGTGACTGACCAGGTGACAGAGACCACTCTTAGT
GTCTCCTGGGACCCAGTGGAGGCTGACATCGATAGATACATGGTACGCTACACGTCTCCTGATG
GAGAGACCAAGGAGGTCCCTGTGTCAAAGGATAAGAGCAGCACAGTCCTGAGGGGCCTGAGGCC
AGGTGTGGAGTACAAGGTTGATGTGTGGGCCCAGAAGGGGGCCCAGGACAGCCGGAAGGCCAAC
ACCAAGGCCCCCACAGATATTGACAGTCCCAAAAACCTCGTGACTGAGCAGGTGACAGAGAGCA
CTGCCACCGTGTCCTGGGACCCAGTAGAGGCTGACATTGACAGGTATGTGGTGCGCTACACCTC
TGTCGATGGAGAGACCAGGGAATTTCTCGTTGGGAAGGATCAAACAAGCACCATCCTGACCGGC
ATGAAACCGGGTGTGGAGTATCAGGTCGATGTGTGGGCCCAGAAGGGGACACGGGAGAGCAGGA
AGACCAGCACCAAGGCCCCAACAGATATTGATGGCCCCAAAAACCTAGTGACTGACCAGGTGAC
AGAGACCACTCTTAGTGTCTCCTGGGACCCAGTGGAGGCTGACATCGATAGGTACATGGTACGC
TACACGTCTCCTGATGGAGAGACCAAGGAGGTCCCTGTGTCAAAGGATAAGAGCAGCACAGTCC
TGAGGGGCCTGAGGCCAGGTGTGGAGTACAAGGTTGATGTGTGGGCCCAGAAGGGGGCCCAGGA
CAGCCGAAAGGCCAACACCAAGGCCCCCACAGATATTGACAGTCCCAAAAACCTGGCGATCAAC
CAGGTGACAGAGACCACGCTCAGTGTCTCCTGGGACCCAGTACAGGCTGATATCGACAGGTATG
TGGTGCGCTACACCTCTGCTGATGGAGAATCCAAAGAATTCTTGATTGGGAAGGAACAGAGGAG
CACTGTCCTGACAGGCCTGAGGCCAGGCGTAGAGTACAAGGTTGAAGTGTGGGCCCAGAAAGGA
GCCCGGGAGAGCAAGAAAGCCAACACCAAAGGCCACACAGACATTGACAGTCCCAAAAACCTGG
TGACCAATCAGGTGACAGAAAATACAGCCACCATCTCCTGGGACCCAGTGCAGGCTGATATTGA
CAGGTACATGGTGCGCTACACCTCTGCTGATGGAGAGACCAGGGAGGTTCCAGTGAGGAAGGAG
AAGAGTAGCACGGTGCTCACAGGCCTGAGGCCAGGAGTGGAGTACACAGTCCAAGTGTGGGCTC
AGAAGGGGGCCCGGGAGAGCAGGAAGGCCAAAACCAAGGCCCCCACAGAAATTGACAGCCCCAA
GAACTTGGTGACCAACCGAGTGACAGAGAATACAGCCACCATCTCCTGGGACCCAGTACGAGCC
ACCATTGACAGGTACATGGTTCGCTACACCTCTGCGGATGGAGAGACTAAGGAGGTTCCAGTGT
CAAAGGACCAGAGTAGCACCATCCTGACAGGTCTGAAGCCAGGCATGGAGTATACCATTCATGT
GTGGGCCCAGAAGGGGGCTCGGGAGAGCAAGAAGGCTGATACCAAGGCCCTAACAGAAATTGAC
CCTCCCAAAAATTTCCGTCCATTTGGTGTAACACATTCCAGTGGGGTTTTGACCTGGATGCCCC
CCTCTGCTCAAATCGATGGCTACATTTTGACCTACCAGCTTCCAAATGGCATCTTGAAGGAGGT
GGAGCTCCAAAGAGGCCAGCAGAGATTTGAGTTGCAAGACCTGGAACAGGGCGTCACCTATCCT
GTTTCTCTGGTTGCCTTTAAAGGTAATCAGCGGAGCCGGAGTGTGTCTACCACCCTTTCTACAG
TGGACGCCCGATTTCCACACCCCTCAGACTGCAGTCAGGTTCAGCAGAACACCAATGCTGCTGC
CAGTGGCCTCTACACGATCTACCTCAATGGCGATGCCAGCCGGCCCATGCAGGTTTATTGTGAC
ATGGACACGGATGGAGGCGGCTGGATTGTCTTTCAGAGACGTAACACTGGGCAGCTGGATTTCT
TCAAGCGTTGGCGGAGTTATGTAGAAGGCTTTGGGGACCCCATGAAGGAGTTCTGGCTTGGACT
TGACAAACTACATAATCTCACCACTGGCACTACCACTCGGTATGAGGTGAGGGCAGATTTACAG
ACTGCCAATGAATCCGCCTACGCTGTGTATGACTTCTTCCAAGTGGCATCCAGCAAAGAGCGGT
ACAAGCTGTCGGTTGGGAAATACAGAGGCACAGCAGGGGATGCTCTTACCTACCACAATGGTTG
GAAGTTCACAACTTTTGACAGAGACAATGATATTGCCCTCAGCAACTGCGCGCTGACGCATCAT
GGCGGCTGGTGGTATAAGAACTGCCATTTGGCCAACCCGAATGGCAAATATGGGGAGACCAAGC
ACAGTGAGGGGGTGAACTGGGAGCCATGGAAAGGACATGAGTTCTCCATTCCTTACGTGGAGCT
AAAAATCCGCCCCTTTGGTTACAGCAGAGACCGTTTCTCTGGCAGGAAGAAGCGGTCCATAGGA
GGGAAGGCAAGAGTGTTCTAAAGGCCATCTGAGCTGTCTTCACAGGAGACAAGAGAGGCTTGGG
GCGGACAGGGTGGGTGGTGGTGACGGGGGAGCTGAAGTTTGAGGGATGCTCAGAGCCTCTAATT
TCTTAGATTGTTGGGTACACAGTGCTAATGATGTCATCATGCTTAGACCGTTAGAGGTTCCTTC
CATGTCATCTGCATGTTTGCCCGTCTCTACTGAGGGCCCCGAAAGCCAACAATGTTGTAACTGA
ACAATACATATGGATAGGACACCGTGTTGGAAACACGAGGTTTTTCAACCCATCCTTACTTAAT
GACAAATGCATCGATCCAGTACATCGATAACAATATCAATTGGAAGTCTTTAGCAATTGGTGGA
GATCTCTGTATGCGACTGATGATATAGATTTTTTAAAGAAAAAAAAAAACAGAGTGAGGTTCTG
ATCCCCCGGGGGTCAGAGCTGAGGCAAGCTGAGGCTTGTTGTCTCCTGGTTCTCCTGGTTTTGA
GGGGAAAGAATAAATCTTACTCCTTTTAAACTTCCTGTGTTTAAAGAACGAACGAAGAGACCAC
AAAGGGGCCACGATGCAGTCATAGTTAAGTTCTGACTAGTCTCTAGCATTCTGGAGACCAAAGC
TCCCGTCTTATTGCTATTTTTAACTGCCCCTTTTCTAGACATTTGCATAATCTCTTCCATAGAT
CTGCATATGTTGTAAATAAATTTGCAGTCATTTCAACTTTAAATAGCCAATCTCTCTAAATAAC
TGGTACCCTCAGCTTTCCCTGACTCACCTCCACGCCCCCCCCACTTCAGTCAGTCCCCAGCCTC
CCTTCCCTGCTCTCCACACTGGAAGCTTCCTCATATCACCCTTCTTTCGTGTTTGGTATCATTT
TGGAAGGTTTTCTGTAGCCAAGTCAGTGACCATTGAAGTAACTTAAATTCCTACTCAAGAAAAC
AAAAATAAAACATTTGATTTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100659	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09443	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003452
	ENSRNOP00000003452.6
	ENSRNOP00000076668.1

RefSeq Acc Id:	NP_001100659 ⟸ NM_001107189
- Peptide Label:	precursor
- UniProtKB:	D3ZK14 (UniProtKB/TrEMBL), A0A8I5XVA3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLWGMLAFPLGFLLASALLVASAPANPETPGCSHKDQQVTVSHTYKIDVPKSALVQVETDPQS LSDDGTSLLVPGEDGEEQNIIFRHNIRLQTPQKNCELADSVQDLLARVKKLEEEMAELKEQCST SRCCQGAADLSRHCSGHGTFFAETCSCHCDQGWEGADCEQPTCPGACSGHGRCVDGQCVCDQPY VGVDCAYAACPQDCSGHGVCVRGVCQCHKDFTAEDCSEQRCPGDCSGNGFCDTGECYCEMGFTG PDCSQVVAPQGLQLLKSTENSLLVSWEPSSEVDHYLLSYYPLGKEQATKQVRVPKEQHTYDITG LLPGTKYIVTLRNVKKDISSSPQHLLATTDLAVVGTAWVNEETETSLDVEWENPLTEVDYYKLR YGPLTGQEVTEVTVPKSRDPKSRYDITGLQPGTEYKITVVPIRGDLEGKPILLNGRTEIDGPTN VVTNQVTEDTASVSWDPVRADIDKYVVRYISHDGETKEKAVPKDQSSTVLTGLKPGEAYKVFVW AERGNQGSKKADTKALTEIDSPENLVTDRVTENSLSVSWDPVEAEIDRYVVSYTSVDGETKQVP VRKDQSSTVLTGLSPGVEYKVYVWAEKGDRESKKANTKAPTDIDSPKNLVTDQVTENTLSVSWD PVQANIDRYMVSYTSADGETREVPVPKEKSSTVLTGLRPGMEYKVHVWAQKGTQESRKANTKAP TDIDGPKNLVTDQVTETTLSVSWDPVEADIDRYMVRYTSPDGETKEVPVSKDKSSTVLRGLRPG VEYKVDVWAQKGAQDSRKANTKAPTDIDSPKNLVTEQVTESTATVSWDPVEADIDRYVVRYTSV DGETREFLVGKDQTSTILTGMKPGVEYQVDVWAQKGTRESRKTSTKAPTDIDGPKNLVTDQVTE TTLSVSWDPVEADIDRYMVRYTSPDGETKEVPVSKDKSSTVLRGLRPGVEYKVDVWAQKGAQDS RKANTKAPTDIDSPKNLAINQVTETTLSVSWDPVQADIDRYVVRYTSADGESKEFLIGKEQRST VLTGLRPGVEYKVEVWAQKGARESKKANTKGHTDIDSPKNLVTNQVTENTATISWDPVQADIDR YMVRYTSADGETREVPVRKEKSSTVLTGLRPGVEYTVQVWAQKGARESRKAKTKAPTEIDSPKN LVTNRVTENTATISWDPVRATIDRYMVRYTSADGETKEVPVSKDQSSTILTGLKPGMEYTIHVW AQKGARESKKADTKALTEIDPPKNFRPFGVTHSSGVLTWMPPSAQIDGYILTYQLPNGILKEVE LQRGQQRFELQDLEQGVTYPVSLVAFKGNQRSRSVSTTLSTVDARFPHPSDCSQVQQNTNAAAS GLYTIYLNGDASRPMQVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRSYVEGFGDPMKEFWLGLD KLHNLTTGTTTRYEVRADLQTANESAYAVYDFFQVASSKERYKLSVGKYRGTAGDALTYHNGWK FTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNGKYGETKHSEGVNWEPWKGHEFSIPYVELK IRPFGYSRDRFSGRKKRSIGGKARVF hide sequence

Ensembl Acc Id:

ENSRNOP00000003452 ⟸ ENSRNOT00000003452

Ensembl Acc Id:

ENSRNOP00000076668 ⟸ ENSRNOT00000100671

Protein Domains

Fibrinogen C-terminal Fibronectin type-III

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZK14-F1-model_v2	AlphaFold	D3ZK14	1-1562	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698924

Promoter ID:

EPDNEW_R9449

Type:

multiple initiation site

Name:

Tnn_1

Description:

tenascin N

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	77,896,740 - 77,896,800	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306002	AgrOrtholog
BioCyc Gene	G2FUF-17767	BioCyc
Ensembl Genes	ENSRNOG00000002548	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003452	ENTREZGENE
	ENSRNOT00000003452.9	UniProtKB/TrEMBL
	ENSRNOT00000100671.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.90.215.10	UniProtKB/TrEMBL
	6.10.250.2590	UniProtKB/TrEMBL
	Laminin	UniProtKB/TrEMBL
InterPro	ECM_Regulatory_Proteins	UniProtKB/TrEMBL
	EG-like_dom	UniProtKB/TrEMBL
	EGF_Tenascin	UniProtKB/TrEMBL
	Fibrinogen-like_C	UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C_1	UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C_dom	UniProtKB/TrEMBL
	Fibrinogen_CS	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	LE_dom	UniProtKB/TrEMBL
KEGG Report	rno:304913	UniProtKB/TrEMBL
NCBI Gene	304913	ENTREZGENE
PANTHER	TENASCIN	UniProtKB/TrEMBL
	TENASCIN N	UniProtKB/TrEMBL
Pfam	EGF_Tenascin	UniProtKB/TrEMBL
	EGF_Teneurin	UniProtKB/TrEMBL
	Fibrinogen_C	UniProtKB/TrEMBL
	fn3	UniProtKB/TrEMBL
PhenoGen	Tnn	PhenoGen
PROSITE	EGF_1	UniProtKB/TrEMBL
	EGF_2	UniProtKB/TrEMBL
	FIBRINOGEN_C_1	UniProtKB/TrEMBL
	FIBRINOGEN_C_2	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002548	RatGTEx
SMART	EGF	UniProtKB/TrEMBL
	FBG	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
Superfamily-SCOP	Fibrinogen_a/b/g_C	UniProtKB/TrEMBL
	FN_III-like	UniProtKB/TrEMBL
UniProt	A0A8I5XVA3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZK14	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tnn	tenascin N	Tnn_predicted	tenascin N (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tnn_predicted	tenascin N (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)