Atad3a (ATPase family, AAA domain containing 3A) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Atad3a (ATPase family, AAA domain containing 3A) Rattus norvegicus
Analyze
Symbol: Atad3a
Name: ATPase family, AAA domain containing 3A
RGD ID: 1305964
Description: Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and identical protein binding activity. Predicted to be involved in several processes, including antiviral innate immune response; mitochondrion organization; and negative regulation of PERK-mediated unfolded protein response. Predicted to act upstream of or within PERK-mediated unfolded protein response and translational initiation. Predicted to be located in membrane and mitochondrial nucleoid. Predicted to be active in mitochondria-associated endoplasmic reticulum membrane contact site and mitochondrial inner membrane. Human ortholog(s) of this gene implicated in Harel-Yoon syndrome and neonatal lethal pontocerebellar hypoplasia, hypotonia, and respiratory insufficiency syndrome. Orthologous to several human genes including ATAD3A (ATPase family AAA domain containing 3A); INTERACTS WITH (+)-schisandrin B; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Atad3; ATPase family AAA domain-containing protein 3; ATPase family AAA domain-containing protein 3A; LOC298682; MGC124646
RGD Orthologs
Human
Mouse
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,632,545 - 171,652,725 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5171,632,547 - 171,652,725 (-)EnsemblGRCr8
mRatBN7.25166,350,302 - 166,370,492 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,350,304 - 166,370,482 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5169,055,281 - 169,075,423 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,876,707 - 170,896,849 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,839,246 - 170,859,388 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,189,590 - 173,209,809 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,189,592 - 173,209,768 (-)Ensemblrn6Rnor6.0
Rnor_5.05176,665,200 - 176,685,381 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45172,598,553 - 172,618,731 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5164,550,758 - 164,570,936 (-)NCBICelera
RGSC_v3.15172,609,041 - 172,629,268 (-)NCBI
Cytogenetic Map5q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
caffeine  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
genistein  (EXP)
glycidyl methacrylate  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
ivermectin  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
thioacetamide  (EXP)
tolcapone  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12865426   PMID:14651853   PMID:18614015   PMID:20332122   PMID:23372768   PMID:25375035   PMID:30361391   PMID:30914652  


Genomics

Comparative Map Data
Atad3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,632,545 - 171,652,725 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5171,632,547 - 171,652,725 (-)EnsemblGRCr8
mRatBN7.25166,350,302 - 166,370,492 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,350,304 - 166,370,482 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5169,055,281 - 169,075,423 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,876,707 - 170,896,849 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,839,246 - 170,859,388 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,189,590 - 173,209,809 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,189,592 - 173,209,768 (-)Ensemblrn6Rnor6.0
Rnor_5.05176,665,200 - 176,685,381 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45172,598,553 - 172,618,731 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5164,550,758 - 164,570,936 (-)NCBICelera
RGSC_v3.15172,609,041 - 172,629,268 (-)NCBI
Cytogenetic Map5q36NCBI
ATAD3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,512,162 - 1,534,685 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,512,147 - 1,534,686 (+)Ensemblhg38GRCh38
GRCh3711,447,542 - 1,470,065 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,437,418 - 1,459,927 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3411,532,821 - 1,555,331NCBI
Celera11,110,376 - 1,132,920 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1720,811 - 743,664 (+)NCBIHuRef
CHM1_111,434,817 - 1,457,345 (+)NCBICHM1_1
T2T-CHM13v2.01946,666 - 969,189 (+)NCBIT2T-CHM13v2.0
Atad3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,825,097 - 155,845,579 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,825,098 - 155,845,550 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm384155,740,640 - 155,761,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,740,641 - 155,761,093 (-)Ensemblmm10GRCm38
MGSCv374155,114,749 - 155,135,207 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364154,584,441 - 154,604,893 (-)NCBIMGSCv36mm8
Celera4158,012,406 - 158,032,870 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.2NCBI
ATAD3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,587,385 - 56,613,475 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,587,428 - 56,612,746 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha556,663,522 - 56,689,500 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0556,789,609 - 56,815,653 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,789,621 - 56,815,650 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,780,163 - 56,806,214 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,672,427 - 56,698,586 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,062,790 - 57,088,831 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC100525876
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,701,460 - 63,721,573 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1663,706,155 - 63,721,574 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,310,001 - 58,325,278 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATAD3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,965,964 - 129,987,866 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605434,429,209 - 34,452,701 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:66
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000045053
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat

Markers in Region
RH127981  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,350,464 - 166,350,677 (+)MAPPERmRatBN7.2
Rnor_6.05173,189,753 - 173,189,965NCBIRnor6.0
Rnor_5.05176,665,363 - 176,665,575UniSTSRnor5.0
RGSC_v3.45172,598,716 - 172,598,928UniSTSRGSC3.4
Celera5164,550,921 - 164,551,133UniSTS
RH 3.4 Map51174.7UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000045053   ⟹   ENSRNOP00000046842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,632,547 - 171,652,725 (-)Ensembl
mRatBN7.2 Ensembl5166,350,304 - 166,370,482 (-)Ensembl
Rnor_6.0 Ensembl5173,189,592 - 173,209,768 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111763   ⟹   ENSRNOP00000090147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,632,547 - 171,652,725 (-)Ensembl
mRatBN7.2 Ensembl5166,350,304 - 166,370,482 (-)Ensembl
RefSeq Acc Id: NM_001034922   ⟹   NP_001030094
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,632,545 - 171,652,725 (-)NCBI
mRatBN7.25166,350,302 - 166,370,482 (-)NCBI
Rnor_6.05173,189,590 - 173,209,768 (-)NCBI
Rnor_5.05176,665,200 - 176,685,381 (-)NCBI
RGSC_v3.45172,598,553 - 172,618,731 (-)RGD
Celera5164,550,758 - 164,570,936 (-)RGD
Sequence:
RefSeq Acc Id: XR_001837838
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,633,214 - 171,652,678 (-)NCBI
mRatBN7.25166,350,832 - 166,370,492 (-)NCBI
Rnor_6.05173,190,201 - 173,209,809 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001030094 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05763 (Get FASTA)   NCBI Sequence Viewer  
  EDL81320 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000046842
  ENSRNOP00000046842.3
GenBank Protein Q3KRE0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001030094   ⟸   NM_001034922
- UniProtKB: Q3KRE0 (UniProtKB/Swiss-Prot),   A6IUR9 (UniProtKB/TrEMBL),   A0A8I6AD85 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000046842   ⟸   ENSRNOT00000045053
Ensembl Acc Id: ENSRNOP00000090147   ⟸   ENSRNOT00000111763
Protein Domains
AAA+ ATPase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KRE0-F1-model_v2 AlphaFold Q3KRE0 1-591 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694328
Promoter ID:EPDNEW_R4853
Type:initiation region
Name:Atad3a_1
Description:ATPase family, AAA domain containing 3A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05173,209,781 - 173,209,841EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305964 AgrOrtholog
BioCyc Gene G2FUF-38903 BioCyc
Ensembl Genes ENSRNOG00000018118 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000045053 ENTREZGENE
  ENSRNOT00000045053.4 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7929859 IMAGE-MGC_LOAD
InterPro AAA+_ATPase UniProtKB/Swiss-Prot
  ATPase_AAA_core UniProtKB/Swiss-Prot
  DUF3523 UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report rno:298682 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124646 IMAGE-MGC_LOAD
NCBI Gene 298682 ENTREZGENE
PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot
  PTHR23075 UniProtKB/Swiss-Prot
Pfam AAA UniProtKB/Swiss-Prot
  DUF3523 UniProtKB/Swiss-Prot
PhenoGen Atad3a PhenoGen
RatGTEx ENSRNOG00000018118 RatGTEx
SMART AAA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I6AD85 ENTREZGENE, UniProtKB/TrEMBL
  A6IUR9 ENTREZGENE, UniProtKB/TrEMBL
  ATAD3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Atad3a  ATPase family, AAA domain containing 3A  Atad3a_predicted  ATPase family, AAA domain containing 3A (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Atad3a_predicted  ATPase family, AAA domain containing 3A (predicted)      Symbol and Name status set to approved 70820 APPROVED