Advanced Search (OLGA)

Gene: Plxdc2 (plexin domain containing 2) Rattus norvegicus

Analyze

Symbol:

Plxdc2

Name:

plexin domain containing 2

RGD ID:

1305962

Description:

Predicted to be located in membrane. Orthologous to human PLXDC2 (plexin domain containing 2); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC108348594; LOC361282; plexin domain-containing protein 2; uncharacterized LOC108348594

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLXDC2 (plexin domain containing 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Plxdc2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Plxdc2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PLXDC2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLXDC2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Plxdc2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLXDC2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLXDC2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Plxdc2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Plxdc2 (plexin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PLXDC2 (plexin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Plxdc2 (plexin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	plxdc2 (plexin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pxd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	l(1)G0289	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	l(1)G0289	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	plxdc2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	plxdc2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	84,077,793 - 84,502,831 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	84,104,864 - 84,497,999 (+)	Ensembl				GRCr8
mRatBN7.2	17	79,169,238 - 79,594,279 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	79,196,369 - 79,585,282 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	82,660,210 - 83,042,904 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	86,495,674 - 86,878,358 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	80,522,638 - 80,905,879 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	83,221,795 - 83,619,291 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	83,221,827 - 83,610,272 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	84,957,281 - 85,352,887 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	90,572,391 - 90,982,074 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	78,507,721 - 78,892,103 (+)	NCBI		Celera
RGSC_v3.1	17	90,582,853 - 90,992,907 (+)	NCBI
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-hydroxypropanoic acid (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

choline (ISO)

chromium(6+) (ISO)

cyclosporin A (ISO)

DDE (ISO)

DDT (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

fonofos (ISO)

furan (EXP)

gentamycin (EXP)

GSK-J4 (ISO)

indole-3-methanol (EXP)

L-methionine (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mifepristone (ISO)

mono(2-ethylhexyl) phthalate (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

phorbol 13-acetate 12-myristate (ISO)

picoxystrobin (ISO)

pyrogallol (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulforaphane (ISO)

terbufos (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

tributylstannane (EXP)

trichostatin A (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

nuclear body (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23376485

Genomics

Comparative Map Data

Plxdc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	84,077,793 - 84,502,831 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	84,104,864 - 84,497,999 (+)	Ensembl				GRCr8
mRatBN7.2	17	79,169,238 - 79,594,279 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	79,196,369 - 79,585,282 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	82,660,210 - 83,042,904 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	86,495,674 - 86,878,358 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	80,522,638 - 80,905,879 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	83,221,795 - 83,619,291 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	83,221,827 - 83,610,272 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	84,957,281 - 85,352,887 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	90,572,391 - 90,982,074 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	78,507,721 - 78,892,103 (+)	NCBI		Celera
RGSC_v3.1	17	90,582,853 - 90,992,907 (+)	NCBI
Cytogenetic Map	17	q12.3	NCBI

PLXDC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	19,816,432 - 20,289,856 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	19,815,943 - 20,289,856 (+)	Ensembl			hg38	GRCh38
GRCh37	10	20,105,361 - 20,578,785 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	20,145,378 - 20,609,121 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	20,145,377 - 20,609,121	NCBI
Celera	10	19,791,420 - 20,255,195 (+)	NCBI		Celera
Cytogenetic Map	10	p12.31	NCBI
HuRef	10	19,769,351 - 20,233,265 (+)	NCBI		HuRef
CHM1_1	10	20,105,332 - 20,569,079 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	19,834,692 - 20,308,236 (+)	NCBI		T2T-CHM13v2.0

Plxdc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	16,360,551 - 16,765,941 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	16,361,115 - 16,760,650 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	16,355,740 - 16,761,132 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	16,356,304 - 16,755,839 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	16,277,949 - 16,673,742 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	16,274,076 - 16,669,869 (+)	NCBI		MGSCv36	mm8
Celera	2	16,260,069 - 16,656,112 (+)	NCBI		Celera
Cytogenetic Map	2	A2- A3	NCBI
cM Map	2	11.8	NCBI

Plxdc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	8,150,477 - 8,567,475 (-)	Ensembl
ChiLan1.0	NW_004955429	8,141,253 - 8,566,927 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLXDC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	32,488,788 - 32,959,149 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	32,494,191 - 32,971,590 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	19,967,265 - 20,443,843 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	20,266,534 - 20,733,415 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	20,451,855 - 20,733,415 (+)	Ensembl			panPan2	panpan1.1

PLXDC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	12,599,907 - 13,111,180 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	12,609,246 - 13,058,236 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	11,292,654 - 11,803,438 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	10,851,378 - 11,309,501 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	10,859,211 - 11,309,768 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	10,161,186 - 10,672,122 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	10,246,228 - 10,758,221 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	10,444,241 - 10,956,254 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Plxdc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	20,130,043 - 20,545,256 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936520	7,417,505 - 7,829,599 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936520	7,417,112 - 7,831,140 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLXDC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	54,268,471 - 54,675,927 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	54,260,300 - 54,677,233 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	60,025,884 - 60,239,402 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLXDC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	19,719,032 - 20,171,917 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666051	25,432,544 - 25,884,472 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plxdc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624796	7,876,194 - 8,298,296 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624796	7,872,864 - 8,298,139 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Plxdc2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	7,159,583 - 7,345,830 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Plxdc2
4175 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	176
Count of miRNA genes:	129
Interacting mature miRNAs:	144
Transcripts:	ENSRNOT00000000155
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	70613502	86062352	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	58194064	87388164	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	68550040	93515804	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
61466	Niddm12	Non-insulin dependent diabetes mellitus QTL 12	3.2	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	65154872	93515804	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	64569820	86954580	Rat

Markers in Region

D17Got218

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	79,545,943 - 79,546,083 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	83,570,570 - 83,570,709	NCBI	Rnor6.0
Rnor_5.0	17	85,304,166 - 85,304,305	UniSTS	Rnor5.0
RGSC_v3.4	17	90,942,736 - 90,942,875	UniSTS	RGSC3.4
Celera	17	78,852,879 - 78,853,018	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AV231634

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	84,493,672 - 84,493,753 (+)	Marker Load Pipeline
mRatBN7.2	17	79,585,141 - 79,585,223 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	83,610,132 - 83,610,213	NCBI	Rnor6.0
Rnor_5.0	17	85,343,728 - 85,343,809	UniSTS	Rnor5.0
RGSC_v3.4	17	90,981,933 - 90,982,014	UniSTS	RGSC3.4
Celera	17	78,891,962 - 78,892,043	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AU046959

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	79,468,320 - 79,468,427 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	83,494,005 - 83,494,111	NCBI	Rnor6.0
Rnor_5.0	17	85,228,040 - 85,228,146	UniSTS	Rnor5.0
RGSC_v3.4	17	90,862,949 - 90,863,055	UniSTS	RGSC3.4
Celera	17	78,775,414 - 78,775,520	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AU022916

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	79,585,548 - 79,585,659 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	83,610,539 - 83,610,649	NCBI	Rnor6.0
Rnor_5.0	17	85,344,135 - 85,344,245	UniSTS	Rnor5.0
RGSC_v3.4	17	90,982,340 - 90,982,450	UniSTS	RGSC3.4
Celera	17	78,892,369 - 78,892,479	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

RH141997

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	37,475,854 - 37,476,073 (-)	MAPPER	mRatBN7.2
Rnor_6.0	5	38,149,618 - 38,149,836	NCBI	Rnor6.0
Rnor_5.0	5	42,776,712 - 42,776,930	UniSTS	Rnor5.0
RGSC_v3.4	17	90,898,002 - 90,898,220	UniSTS	RGSC3.4
RGSC_v3.4	5	38,801,490 - 38,801,708	UniSTS	RGSC3.4
Celera	5	36,444,626 - 36,444,844	UniSTS
RH 3.4 Map	5	170.9	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BE119757

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	79,512,568 - 79,512,734 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	83,537,413 - 83,537,578	NCBI	Rnor6.0
Rnor_5.0	17	85,271,009 - 85,271,174	UniSTS	Rnor5.0
RGSC_v3.4	17	90,909,355 - 90,909,520	UniSTS	RGSC3.4
Celera	17	78,819,663 - 78,819,828	UniSTS
RH 3.4 Map	17	795.6	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AU049469

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	79,248,583 - 79,248,784 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	83,273,764 - 83,273,964	NCBI	Rnor6.0
Rnor_5.0	17	85,009,264 - 85,009,464	UniSTS	Rnor5.0
RGSC_v3.4	17	90,631,180 - 90,631,380	UniSTS	RGSC3.4
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	13	80	207	91	90	59	130	59	6	439	249	18	189	107	102	31	32	32

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000155 ⟹ ENSRNOP00000000155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	84,104,864 - 84,493,812 (+)	Ensembl
mRatBN7.2 Ensembl	17	79,196,369 - 79,585,282 (+)	Ensembl
Rnor_6.0 Ensembl	17	83,221,827 - 83,610,272 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117521 ⟹ ENSRNOP00000080623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	84,104,864 - 84,497,999 (+)	Ensembl
mRatBN7.2 Ensembl	17	79,196,369 - 79,585,282 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000134561 ⟹ ENSRNOP00000106027

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	84,189,734 - 84,497,999 (+)	Ensembl

RefSeq Acc Id:

NM_001108422 ⟹ NP_001101892

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,104,913 - 84,493,813 (+)	NCBI
mRatBN7.2	17	79,196,369 - 79,585,283 (+)	NCBI
Rnor_6.0	17	83,221,827 - 83,610,273 (+)	NCBI
Rnor_5.0	17	84,957,281 - 85,352,887 (+)	NCBI
RGSC_v3.4	17	90,572,391 - 90,982,074 (+)	RGD
Celera	17	78,507,721 - 78,892,103 (+)	RGD

Sequence:

show sequence

CTGGGGCTCCGCGGTGTTCGGAGCCACCTCCTTCCTCACCCGGAGAGGCTCTCTCAGCAGGCTG
CAGCCTCACTTTCCTTTGGTTTTTCTCTTTCTTTAAAAAAACCCCCCACCCCTCTTCTGATCCC
AGCAGCTGGTCCTTCCCCGGCTCCACTCTCCGGAGCTGCCCATCCTTCCGGCTGCCGGCGAGGA
CGCACGCTCAGCCTTAGGCGAAGCAAAGAAGAAAAACTTGTCGGAGGGGTTTCTCCAGCCTCCA
CGAACCTCCTTCTCTCGCTAACCCCAACCGCCCGCCGGGGCCAGCCCTAAGTCTGGGAAAGTTC
CACCGGTGCTCAGCGCCCTCTTGGATCTGGAGCCGCACGGGCGCAGCCAGTGGAATTAGATCTG
TTTTGAACCCAGTGGAGCGCGTCGCGGGCGCTCGGAAGTCACCGTCTGTGGGCGCCCGGGTGGC
GCTGCCTGTGAGGACCCGGGAGTTTGCGGGACCGACTGCAAGTGACCTTTCCTCTCCGCATTTG
GTTGGTTCTGTCTCGGCTGGGGCTGCGAGGGTGACAAGTTGCGGTGAGAGCTCCCGAAGTTTGG
AGAGGGCTGGGTCGTCTCTCCTTCGCTTCTCTGGTACCCGGAGTGAAATCCTAGCGAAACTGTC
AGAGGCCTCCGGATCCCACCCCAGACTCACCGGCAGACACTCCGCCGCGTCGCCCCATCCCCAA
GGAGAACCCCGGAGCCCAGGGCCTCAAGGAAAGATCGCTGGGCAGGGGAGGTCGCGGCAGCGGC
ATGGCGAGGTTCCCGAGGGCCCACCTGGCGGCAGCAGGAGTTATGTTACTTTGTCACTTTTTAA
CAGACCGGTTCCAGTTCGCCCACGGGGAGCCTGGACACCATATGAATGACTGGAAGTATGTAGT
TGCAAACACCTCGCCTCAGAGTGAAGAGGGGGTGGAAGTGGACTCTCAAGCATACAGCCACCGG
TGGAAAAGAAACGTGGACCCTTTTAAAGCTGTAGACACAAACCGAGCCAGCATGGGCCAAGACT
CTCCGGAGTCCAGAGGCTTCCCCGACCTGCTACTGGATGACGGGCAGGACAACACCACCCAGAT
CGAGGAGGACACAGATCACAATTACTACATTTCTCGGATATATGGCCCAGCGGATTCTGCCAGC
CGGGATCTGTGGGTGAACATAGACCAAATGGAAAAGGACAAAGTGAAGATTCACGGGATACTTT
CCAACACTCATCGGCAAGCTGCAAGAGTGAATCTGTCCTTCGATTTTCCATTTTATGGTCATTT
TCTAAATGAAGTCACTGTGGCAACTGGGGGTTTCATATACACTGGAGAAGTTGTGCATCGAATG
CTGACAGCTACACAGTACATAGCCCCTTTAATGGCAAATTTTGATCCCAGTGTATCCAGAAATT
CAACCGTCAGATACTTTGATAATGGCACAGCTCTTGTTGTCCAGTGGGACCATGTCCACCTGCA
GGATAATTACAACTTGGGAAGCTTCACATTCCAGGCCACACTCCTCATGGATGGGCGTATCATC
TTCGGATACAAAGAAATTCCGGTCTTGGTTACACAGATAAGCTCCACCAACCATCCAGTCAAAG
TCGGGTTGTCTGATGCATTTGTCGTAGTCCACAGGATCCAGCAAATACCCAATGTTCGAAGAAG
AACAATTTATGAATATCACCGTGTAGAACTACAGATGTCCAAAATTACCAACATTTCAGCTGTG
GAGATGACCCCACTCCCAACATGTCTCCAATTCAATGGTTGTGGCCCTTGTGTGTCCTCGCAGA
TTGGTTTCAACTGCAGTTGGTGTAGCAAACTTCAAAGATGCTCGAGTGGATTCGATCGCCATCG
GCAGGACTGGGTGGACAGTGGATGCCCTGAAGAGGTACAGTCAAAGGAGAAGATGTGCGAGAAC
ACAGAGCCAGGGGAGACATCTCAAACTACTACGACCGCACAAACAACCACCACGCAATTCAGGG
TCCTGACCACCACCAGGAGAGCTGTGACGTCGCACATGCCTACCAGCCTGCCTACAGAAGATGA
TACGAAGATAGCACTGCATCTCAAAGACAGCGGAGCCTCCACAGATGACAGTGCCGCCGAAAAG
AAAGGAGGAACCCTCCATGCAGGCCTCATCGTTGGAATCCTCATCTTGGTCCTCATTATCGCAG
CAGCCATTCTGGTGACAGTTTACATGTATCACCACCCAACATCAGCAGCCAGCATCTTCTTCAT
TGAGAGACGCCCAAGCAGATGGCCAGCAATGAAGTTTCGAAGAGGATCGGGACATCCTGCCTAT
GCGGAAGTTGAACCAGTTGGAGAGAAAGAAGGTTTTATTGTATCAGAGCAGTGCTAAGATTTTA
GGACAGAGCAGCACCAGTACTGGCTTACAGGTGTTAAGACTAAAATTTTGCTTATGCGTTTAAG
AAAACAGACACACACCCACCACCACACATAAAGGAGCCCTAAACTGCTGTAGACAGAAGGGCGA
CGAGATTTCTGGACAAGCCCAGCCCAGGAACGTTGAAAGGAAAACTCAGACTTGTACAAGACAC
CATGTACACTGAATAAAGAATTCCCTAGCGGAATGACATTCATGGTTCACAAGGAACATCTCCT
GTGGACTTGCCAGGAGTGTGACGAGATGACGATGCTTTTGGTTTAGGTGCAGGGTTGCAAAGGG
ATCAAGGAAAAAAATATGATAATAAATAAAGCTTTAGTTCACAAGGGAAAAAAAAAAAAAAAAA
AAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600633 ⟹ XP_017456122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,104,733 - 84,502,831 (+)	NCBI
mRatBN7.2	17	79,196,234 - 79,594,279 (+)	NCBI
Rnor_6.0	17	83,221,795 - 83,619,291 (+)	NCBI

Sequence:

show sequence

GCGAGCGCGGCGGCGCCTCCGCCACCAAACTCCTGGGGCTCCGCGGTGTTCGGAGCCACCTCCT
TCCTCACCCGGAGAGGCTCTCTCAGCAGGCTGCAGCCTCACTTTCCTTTGGTTTTTCTCTTTCT
TTAAAAAAACCCCCCACCCCTCTTCTGATCCCAGCAGCTGGTCCTTCCCCGGCTCCACTCTCCG
GAGCTGCCCATCCTTCCGGCTGCCGGCGAGGACGCACGCTCAGCCTTAGGCGAAGCAAAGAAGA
AAAACTTGTCGGAGGGGTTTCTCCAGCCTCCACGAACCTCCTTCTCTCGCTAACCCCAACCGCC
CGCCGGGGCCAGCCCTAAGTCTGGGAAAGTTCCACCGGTGCTCAGCGCCCTCTTGGATCTGGAG
CCGCACGGGCGCAGCCAGTGGAATTAGATCTGTTTTGAACCCAGTGGAGCGCGTCGCGGGCGCT
CGGAAGTCACCGTCTGTGGGCGCCCGGGTGGCGCTGCCTGTGAGGACCCGGGAGTTTGCGGGAC
CGACTGCAAGTGACCTTTCCTCTCCGCATTTGGTTGGTTCTGTCTCGGCTGGGGCTGCGAGGGT
GACAAGTTGCGGTGAGAGCTCCCGAAGTTTGGAGAGGGCTGGGTCGTCTCTCCTTCGCTTCTCT
GGTACCCGGAGTGAAATCCTAGCGAAACTGTCAGAGGCCTCCGGATCCCACCCCAGACTCACCG
GCAGACACTCCGCCGCGTCGCCCCATCCCCAAGGAGAACCCCGGAGCCCAGGGCCTCAAGGAAA
GATCGCTGGGCAGGGGAGGTCGCGGCAGCGGCATGGCGAGGTTCCCGAGGGCCCACCTGGCGGC
AGCAGGAGTTATGTTACTTTGTCACTTTTTAACAGACCGGTTCCAGTTCGCCCACGGGGAGCCT
GGACACCATATGAATGACTGGAAGTATGTAGTTGCAAACACCTCGCCTCAGAGTGAAGAGGGGG
TGGAAGTGGACTCTCAAGCATACAGCCACCGGTGGAAAAGAAACGTGGACCCTTTTAAAGCTGT
AGACACAAACCGAGCCAGCATGGGCCAAGACTCTCCGGAGTCCAGAGGCTTCCCCGACCTGCTA
CTGGATGACGGGCAGGACAACACCACCCAGATCGAGGAGGACACAGATCACAATTACTACATTT
CTCGGATATATGGCCCAGCGGATTCTGCCAGCCGGGATCTGTGGGTGAACATAGACCAAATGGA
AAAGGACAAAGTGAAGATTCACGGGATACTTTCCAACACTCATCGGCAAGCTGCAAGAGTGAAT
CTGTCCTTCGATTTTCCATTTTATGGTCATTTTCTAAATGAAGTCACTGTGGCAACTGGGGGTT
TCATATACACTGGAGAAGTTGTGCATCGAATGCTGACAGCTACACAGTACATAGCCCCTTTAAT
GGCAAATTTTGATCCCAGTGTATCCAGAAATTCAACCGTCAGATACTTTGATAATGGCACAGCT
CTTGTTGTCCAGTGGGACCATGTCCACCTGCAGGATAATTACAACTTGGGAAGCTTCACATTCC
AGGCCACACTCCTCATGGATGGGCGTATCATCTTCGGATACAAAGAAATTCCGGTCTTGGTTAC
ACAGATAAGCTCCACCAACCATCCAGTCAAAGTCGGGTTGTCTGATGCATTTGTCGTAGTCCAC
AGGATCCAGCAAATACCCAATGTTCGAAGAAGAACAATTTATGAATATCACCGTGTAGAACTAC
AGATGTCCAAAATTACCAACATTTCAGCTGTGGAGATGACCCCACTCCCAACATGTCTCCAATT
CAATGGTTGTGGCCCTTGTGTGTCCTCGCAGATTGGTTTCAACTGCAGTTGGTGTAGCAAACTT
CAAAGATGCTCGAGTGGATTCGATCGCCATCGGCAGGACTGGGTGGACAGTGGATGCCCTGAAG
AGTCAAAGGAGAAGATGTGCGAGAACACAGAGCCAGGGGAGACATCTCAAACTACTACGACCGC
ACAAACAACCACCACGCAATTCAGGGTCCTGACCACCACCAGGAGAGCTGTGACGTCGCACATG
CCTACCAGCCTGCCTACAGAAGATGATACGAAGATAGCACTGCATCTCAAAGACAGCGGAGCCT
CCACAGATGACAGTGCCGCCGAAAAGAAAGGAGGAACCCTCCATGCAGGCCTCATCGTTGGAAT
CCTCATCTTGGTCCTCATTATCGCAGCAGCCATTCTGGTGACAGTTTACATGTATCACCACCCA
ACATCAGCAGCCAGCATCTTCTTCATTGAGAGACGCCCAAGCAGATGGCCAGCAATGAAGTTTC
GAAGAGGATCGGGACATCCTGCCTATGCGGAAGTTGAACCAGTTGGAGAGAAAGAAGGTTTTAT
TGTATCAGAGCAGTGCTAAGATTTTAGGACAGAGCAGCACCAGTACTGGCTTACAGGTGTTAAG
ACTAAAATTTTGCTTATGCGTTTAAGAAAACAGACACACACCCACCACCACACATAAAGGAGCC
CTAAACTGCTGTAGACAGAAGGGCGACGAGATTTCTGGACAAGCCCAGCCCAGGAACGTTGAAA
GGAAAACTCAGACTTGTACAAGACACCATGTACACTGAATAAAGAATTCCCTAGCGGAATGACA
TTCATGGTTCACAAGGAACATCTCCTGTGGACTTGCCAGGAGTGTGACGAGATGACGATGCTTT
TGGTTTAGGTGCAGGGTTGCAAAGGGATCAAGGAAAAAAATATGATAATAAATAAAGCTTTAGT
TCACAAGGGATCTACACCTTTGGTTCAAATGTTCTTCTCTGACGTCTCAAAGATAATCACGTTC
CAAAGCCTGAACGCTTTCACTGCAAAGAGCAATGGTGAATTTTCAAGATCACAGGGAACAGTAG
CTCGCACAAGAGCAAAACCAAACATGAAAGGAGGTTTTTCTATCTTTTCCAAACAGACTATCGG
CAAAAGGATTTTATGTTGCGCTTTAGATGCCATTGTCCAGACAAGTTCATTACTTTGCAGGACG
AATTGTTCATCTGTTCAGAAGTTCAAACTATGCCTGCCTCTTCCTTGGTAATGAATAACCTTCC
TGTGAGCTGTGACACAATTTCCAAATGTTAAGCTAAGGACTAGAGAGGAGGGAGTAGCCAGTGA
GGTTTTCCATTCTCTCACTGCAGAGTAAAATGAAATTTGCTTCCTAAGGTGCTGCTTCTCTCCC
ACCTGGAGTCCCATGGAGCCTCATTTGCTCTTGGCTAATGAAAACAGACAGAAATCAGAGGAAG
ATTTGTGAGAGCATTTTTTTGAGACAAATATCTTAAGAAATGTTTTTTTTTAAAAATATCACTA
TGTCTGTATGAAAAACCCATTTCATTGTCAATCCCTGTATAAGAAGCCATTCAAGTCATCATAT
CCCTGGTGATAGAAAGAAAAAAAAAGAATGAAATAACCCTGCTGAATCACACAGTAATTTTCTT
TAAAGCACATAGTAGTTACATAAATATATATATAAATATATTTTTGTTTATAACTAACACAAGG
CAGGCTCTTGTGGCTCTATAGAGTGTATTTTGTCATCAAGACAAAAGAAATGCAAGATGCATCA
CTGGTCCCTTCCATAACATTGTAAGATACTCCTCACTATTTTTATGTGACTTCCAGAAGTGGGT
CAGTTGGCCACAGCATGTATCATTTTACCGCTTCTTACATCCCCTGTACCATGTACACCAACCC
CTCCCTCCTTGACTCCAAGAAGCAGTTGTAAATGTCCCTCGAGTAGAGTGTTCATTTGTACCCT
GATTGCAAGCCGAATACTTTGGGAAATTCCCCTAAAGTACAGAAAGGAAAGGTCACCAGACAAG
GAGGTAAGCGGTTAATGGAAACCATATCCCTAAACATGAGTTCACATGGCTCGCCCTGTAAAAC
ATTCGCATTCTCTGCCAAGGAAAGTCCGGGTTCTTACAAGGTACAGCATTCACCGTTTGCAGAT
TCAGGTTTCACAAAACCAAGATCCTTACCAGTCGCACCTCACTGACAGTTTACAGTCTGTGTAC
AATGTCTACACTGGACAGCGGAGTGTCACGTGTCATCTGCCATAAACAAGGTTCTTTTCTGTCG
CATGTATTTTGCCTACACTTTGTTCTTGCAGATACTTCCAAGTATTTGACGATGGCAACTTGTC
CCTGACCTTAGTTTGAAATGTCAGAAAAGAACAATGGAAGAGCAACCTGGTTGCAGGATGTGAT
GACAATCTGTGCCGCAGCTATTTTCGTGCCGTATGCAGTATCTCGGTTTATTCTTGTCAGTACA
GTTTTGGTGAGAGAGCAATAACCAAATGACTTGCCACTATAATTGGTGCAACTGGTATTCTACA
GACACATATGCTACACGTGGACAACTTCCTTTTAGGGCAAGACAAGGATGCTTTCACGAGCTTT
GGCAGTAATCATGGCTTCCAAGAGCAAGGGATTAGCAGCAGCCTAGATCTCTTAGCATATTTAT
ATTTCACTCCTTGCATAATTCCTTTAAACAGTAACGTTAACCTTATATTCTTCAAAGCCCATCC
TCTAGTTTAGACTTAATCGATAGTTTTGGTAAATGAATGCACAAGACAAGACCCTCTAAATCGT
TTAGCATACCAAAGCACTCAGTAACAAGAGAAAGGCAATTGGAAGCAAAATGATGCAAAGTTGT
GTGGAAATGTTCAAAAATAATTGAGAGAGAATAAGAAGTTCTGCTTTGCATGAATCCACAAGAA
GTAAGAAGAAATATTGGGAGAGTCTCTTCCTGCTATAAAATTCTAGTTCTGTTTGTGCTTCTGG
TTTGTTCTCAATTCCTGTTTTCTTCAGATGAAGGGTATAGAGGGTTTCCAAAAACTTCAAAAAG
GAGTCCAGTGGAACGGACTTTGTTTGAATTATGCATTACAAAGGGTAGACACATGCACCTTAGT
CAATATTCTGTGAGAATGAAGGAAGATTGCCAATGGTGTTTTTATAAGACGACCAACAATGTAA
TGCATACAACCTTAGAGGAAATCAGAGAAACGGTTTTACAAAGGAACTCATGAGTGTTGCCTTA
ATTATTTGTAAGAATAGTAATCAGTGATCAGACTTACCAGTCCACCAACAAGATGTTACAGGCC
ACTTATTGGCATGTTTGTGAATGGTTGAGACCTTGTGGGACATTAACAAATAGAAAGAGAATGG
TTAAAGACAAAGGACAACTGAGCACAAATGTTTTTATGGCAAGGTTTATAGGGTATTTAGTAGA
TTCTCAAATCTAGAGTAGTGCTGTCTACACTACTGACCAGTTATGAGTATTGATCTATAAATTA
AATACAATTTACATTCAGCTGCCTGGTCACATTTTGAATGACCCATAGACACACATGACTCATG
GCTGCCATTGTGGGGTACACACAATCCTTCTATCATTGCAGAAAGTTTTAATGTAAGATACTAT
AATGTTTCAATTGAACTGTTTGCTTTTGAAGGAAATAGTGGAGGAAGGAGGGATGGGAGGAAGG
AAGGAAGAAAGGAAGGAAGGAAGGGAGGAAGAAAGGAAAGAAGGAAGGAAGGAAAGAAGGATGG
ACAGAAGGGTATTTGATAGCTCTTAGATATATTGTAACAATTATTTTCTTGTAACCTAAGAGAA
TCCTCATAAAGAAATGATGAGAATACCAGTTGACATGGCTTTGTGTCTCCATAGTGTTTCCTTG
AGAAAAACCACTTCAATTTTCATGAGTCTCAATCTTCTCATTGGAAGAAAAATTAAATATATTT
TCCTGTCTTTTGCAAGATTGTCTTACAAACTGACTAATACAGATGTAAATACTGTTGAAACCTT
ACAGCAAAGTGATCTGTAAAGCACATCTGTATGGCAAGCACCAAATTGCACACAAGGGAAGAAG
AATTCATCAATCCAAAAGGCAACTGGACAATCAAGGCAGTACATTCTTGAGAAAATGTCAAAGC
GCATATCAAAACCACTTGAGTTTCTTTTTGTCCATTTTTTTTCTGCTACTTTCTCTTATTTGAC
AAATGTCCTTCATCTACCCCATTTGCCTCGACTCTTTCTTATTTGGAGTCACTGTGTGCCTCTG
GTTTGTTCTACTCAGGAATCTCAGCGTCTTAGCAGGGGTTCTTTTGAAAGCAAAATAAACGACA
CTCAAACATTAGTTATCTCAGATTTATTTTATTTCTATTAAAAAAGTAAGGAGCTATAACATTG
CTATATAAATGTGGGGAAAACTTACTTTTGATGTAAATTCTACAAATGACAGACTTTATAACAG
AAATAAAATTACCTTAAAGTATGCTCGTGTCCAGATAATACATAGTGTGAGAAGGCATATACTC
TGTTCTTTTTACTGATGTGAAAACCAAGGCTTAGATAGATTCACTGATTCTCACTGGTACCAAA
AGTGGGTTTTGATTAAACCTCTCAATTGCTTTTTCTTGTTTGATTACTATGGCTGACATTCCTC
TGTAAGTGATTAAAGCAACCAAGCATCTGGAAGTCATAATCCATGAAAAAATTAATTTCACCTG
CTATAAGGATGATCTCTCTATACTATAGTATGAGACGTTGAAACAATTATAGTCTTCTATGCTG
TTACTTTCTTAAGAATGCTTTTGTTCTATTTCAAATTCTATCTCTGGTAGGGTCCTTATATGTC
CTCTTTCTCACTTCCTAAGCTGTGGTCATCAGGTTAGCAGTGCTATTTATCTTTGTCATTTGAA
TGACTTTCTGCCTTTGTTTCATTTCTATTCAATTGTATTTGAATACTAATACTGTTGATTGAAG
AATTTCTGCCACATAGATAATTACAGTTTTTACTTGTCCATGGAAACTATTCGGGAACTTGTGT
TCTAAGAAGGTCTTATGGGAAAATATTGTGAGATCAGGGGTGTTACCTATGATATACTCATATC
ATTGTGTTTTTATAAAGCACTTTACATTTTACAGAGTACATTGATTCATGCTTTTACTTGTTCT
TTCATTGAACGACCTAATTAATTTTCATATATATTAACCACCTACTGAAAGTTACTCTGCAGAT
CTTGTGGTACAAGAAAACAAATTATGTGGTGTTTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTAAACTGTTCAGGGTACAAGAGAAATGGCTTAGTGGCTAAG
AATAATTGCTATTTTTTTTCAGAAGACCAGAGTTTGGTCCACAGTGTTCACAACCATTTGTAAC
CCAAGCCCTAAGGAAACTCACATCATTTTCTGTTATACACACACATGCACAAACACACATATAT
ACATAATTTAAACATTAATAAGTCTAAATAAATAGTTTAGGGGATAAATATAACATTATAATAC
AATAAGATCATCAAACACAACTTTACAAATAAGAAAAGCATTACTCCATCAATTTTTAATTCAA
AGAATTATTTGCTCTATTTCAAATAAGCTGCTAACTTTATGAGTGAGAACAGAAAGGCTCAAAG
GTCCAGGAAAAATTGTCCATTCTCTTAAATGTGTACTGAGCAGATCTAGAGTGGAGTTTCTCTT
TCCTTGCATGGATTCTGCTGTCATTTTTAAATGGTGACTATCTTTGGTTTTAGACACCAGTGCA
TCTAAAAAGCTTTTACCCTTCAGAGTCACTGCAGTTGTTCTGTCAAAAGACAGACTTCCTTTCC
TCAACTTAGAGCTGTTGACATGTGAAGTTTATTAAGTCTCTGTTGAAGATTTGGAAAGTGGGTA
CCTACCTCCCTTCTAATCCTCATGGTATTTGGCGGCCTTCATGACTTTAATGATTACTCAACAG
TATACAAATCCCTCCAATAAAAAGGCTTTTATAAACATCATTAGTCTTCTTAGAGTGCAAAATG
GGAAGAGGATGGCCAAAGCATCCCTTGTAAAAATCCCTGTATTGCCTGGAAAGTAGAGTTTTGT
CAGGAGTCAGGCCCCAGAACAGTAGTCGACACCTGCAATTCAAGCCATGGGAGGCAGGTGCAGG
AGGATTACAATTCAGAGTTGAGGAGAGAGGTTGGGGGAAAGATTTAAAGAAATCTCCCTTTCTT
TTATTATTTAATCTTTATCATACACTTATTTTTATTCATATCAAAGCTGGAAATCACAAACTTC
AAACTACAAAAGTAGCATGTAATTCAATCACAGCCCAACATAACCTTTATCCAGTACTCCACCT
CTAACAATTATGTTGAGGACCTAATTAGGAGGAGACTAGAAGATAGGCTATCTTTGGAAAGTTG
AAATTTGGCTGATGGATCATCAGTCATCAGGTTGTCAAGCAGTGACACCTTGTATCCATAATTG
CTGAAGCAACAGTCTGTACTCAGTGCAGAGCCATGACCCTGAAGTCATGCAGCTAGAGTATCTC
AGACTTGGATCATTTCCCTCATCTACAAATTGGAGCTTCAAAATGTGCACGGAAGACAAAGCTG
CTTGCATCTAATTTTAAGTAAGACTGGATGGCCTTTCTGTTTTTAATTCCTGAAAGTTTTCCTA
TCAGGACCATAAGAATACTCTCTCCTGTCACCTAATCAACCATGTGCTTAAAGCAATAATGCTG
ATATGATGGGCTCTGTACTATTCTGTGAAAATAATACTGCCCCAAGACACTGAAAATTCACAAC
TTCAGACTTGAGATGCTTACGGATGTCACAGCAGTTTGTATGACTTTAATGTGCCTTATGTCAG
TGTTCCTAAAGGTCAGTAGCTTCTTGTAGATAACTGTCAATATAGTGAGTTTGTACTTTTGGTC
ATTTTGCATCAGTTGAGAAGCTCGGTGAAGCTTCCTGAAGACAGTTCTTTAATATTTCAGGAAA
ATGAAGAATAAAAATTGGATTATCTGTTTTTCCTTTGCCTTTCCTTGAAGATGTTGGAACTAGG
TAGCATTCAGAGTTATTCAGTTCATATGAATTAATAGGCACAATAGAAAACTTCAGGACAAAGT
CTGAAGGCCTTGAATACCACCAAAGACCTCTGAGGAATATTCTCACCTGAGAGCATGAAATCAG
AGCTTTCCAAATTTGGAGCACCTCAGAGGTGTTTCTAGTTTTATACTTTCAGTCTCCTGTCAAA
CTACATGGCTGCATGTTTTTAGGTTCTGGATCAACTGGTTCACTAAATTCAACTCAAATTCTAC
TCTATCTTCCTAATTGTTTCCAGGCATAACTTTGACAGCAGTGCCTACTGCCATTACAATGATT
ATTACCACGAAACCTGATTCCCTGAATCAAATTCCTTTAAGAATTTTGAAGAATAGCATAATGT
TGGCTCCTCGATTGTTTTATGAATTCTGAAGCAGTAAATGCCCAAGGAGTATCTGCCAAAACCT
TAGAGCGCATTGTCAACACCAAAAGGTTTTGTTACTTTATAGCCATGATAAAAGGCTGGAAAGT
GCAAATTACAATCTTGCATTCATCTTTGTCTAATTTCTAAGATTTATTAACATGTGATGGTTAT
TCAAAAATTTCACTAATGGATTACAATGAAAAAAAATGCCTTGGCAGATATTAATGTACGTATT
CATTTTATATTTCAGCTGAAATATCTCAATGATGCTATCCCTCCCAAGGGAGTATGGATTTTTA
ACAGCAGTCTCCCTTATCCTTTGCATTATAAAATATGTGTGTCTGAATTAAGGTATCACTCATT
TATCATGCAACTGTAAGCTTTTGGGACCCATCAACACAGGCATAGCTGGAAAGCACGCTACAAG
TTTGGTCCATGAACTGTGTAGGTAATAGTGAGGAAACATGAGTTCCGGGGATATGAATAAAGAT
TCACACATAAGATCAGTCAGCCTGTTCAACTCTGCAGAGAAGTGTTCAAATAAATATTCAATGA
GGGTCAGCTCAAATTTAGGTCCTTCAGACACCGGAACGCATATTCTGGAAGTGACACGGATAGG
TGGAGGTAGACTTGAAGTACATGATGTCATCAGTCAGTCTAAACCTCAGCCATCATTCACACAC
ATTTCGTTGACTTTAAGCCTAGTACCACCCAGTCCCTTGCCCTGGGGACTTCAGTGACTAAGAA
TCAGGCAGTTGTTTTTCTAGTTATGTCCTTTGATTTAAGAGCCACAAACATGCAGTTCAATTTC
TGTGACGGAGAGCCAGCTAACTACACAAAAGCAACAAAAAATAACATGGAATATTTCTGTCCTG
AGGAATCAGTAAGAGTGACTCTTTCATCTATATTCCCCACAATTTCTCTGTGAGAAAGTTGATA
CTCAAGACCTGAACCCCAACACTGTCTGGATGCCATAGTGACAATTATGTAAACATCTAACGAT
AATTGAACAAAGCCACATTCAGATTGTCAGAGCGTAGCAGGGGAAATAATCCTCAGCTACTTCT
AATAGACTCCTCTGAAAATAATACTAGAAGAAATCAGAGCTTCCTTTGGAATAAAGTGTTAAAA
CCTGTTTTAGAGAAACCAACTAAGTATCTTTAGGAACAGATGTCCTCTGTATGGTGTAAGCCAA
GTATTGGGGACCCTGACTGAGCACTGAGCACGTCACTGACTGGTCAACACATCTCATTTTCCTG
AGTTGAGGCATCTGGGCAGGGACTTGGCGAGTATATTATTTTTAAAGGAAAAAGTTAGAGACAC
TCGTTCTTGCATGCCAACTGGGATCATGGAAATTTGAAATGCTAGGCATACACTTCTGTTTCTA
CTCTTGCTGCCTGCGGTCCTTTGAAAGGTTGAAGGTCAAAGAGAAAAACTTGAGGACTGGTGTT
GGGGGTACGCTGTCCACACTTCCTGCCAGGTGTGCAATGCAGAGAATATCCGTGAGGCTCAAAG
TGGATATAATTGAACTGTGTTGGAGTCACAAAGCTCCCTTTCTGCTGCTGAGAACAGCACAGCA
AAGAAAACCTGACCCCTGCAACCCAGTTGGCCCAAACAAAGGAAAGATTGTGGGTGAGCACGGC
CCATTGCCAGGATGGGTTATGATATGTTATGACTGCTTTCTGTGGCCAACCAAATACGTGTCTT
TCAGGTGAAGGTTAGTTTTGCAGATGATTTTCTAAATGCAAGGCTTGAAAAACATCATTCCAAA
TTTCTTCCAGTCTCTGGGCGCCATTCCTCTTTCTTCTGCCATGTCCAAGAGGCATTCCAAGACC
GTTTATTTCTATTGTGTTATAAGAGTTTGCCCTTACTTCTCAAGTCACACGGCATACCCAAGGC
TGCAAATGGGGACACAATAGTGTCTGATGCTGCATGGATTGTATCTGAGAGCGAAAAGTGTGTG
AGCCCAATCGAAGTCCTTGGTTTAAATCCCGTAATCCAAATGCTGCACAGCACACAAGCTTCTG
GAATATACTTTAGGTGCAGACAACTTAGCTAAGCGTTAATGTATTTTCTTATGGTCCATTAGGT
TTCTGTCTTTTACCTGGAAATCCATATGATTGGAATACTTCTTTACTTATTAACATGTTTTCTT
ACACCAGGTTTTTCTGCCGGTCTTGTTCTGCAAACAAGATGAAGGAAATTTCTTTGCTAACTAG
TAATTGCATAATGAATCCAGTATACTTACTGGCAGCTGTACAGTATAACTTCTAAGGACTGGAA
GCTGGTAGTGACCAAATGTTACCCACACCTATCGATTGCTATTTTCAGAATTAAATCATGTTCT
TCTAGTTTTAAGTTGGAGTCTACAAATCTTGAACTTTAGAAGGGAAGAAGGGAGCTATTTGTGT
AACACTGCTGTCATGTTTGGCTGCATATTAAAAACAAATAAATGAACATTTTGTTTTAATTTCT
TAAA

hide sequence

RefSeq Acc Id:

XM_039095935 ⟹ XP_038951863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,188,549 - 84,502,831 (+)	NCBI
mRatBN7.2	17	79,280,003 - 79,594,279 (+)	NCBI

RefSeq Acc Id:

XM_039095936 ⟹ XP_038951864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,188,538 - 84,502,831 (+)	NCBI
mRatBN7.2	17	79,279,172 - 79,594,279 (+)	NCBI

RefSeq Acc Id:

XM_039095937 ⟹ XP_038951865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,077,793 - 84,502,831 (+)	NCBI
mRatBN7.2	17	79,169,238 - 79,594,279 (+)	NCBI

RefSeq Acc Id:

XM_039095938 ⟹ XP_038951866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,077,793 - 84,502,831 (+)	NCBI
mRatBN7.2	17	79,169,238 - 79,594,279 (+)	NCBI

RefSeq Acc Id:

XM_039095939 ⟹ XP_038951867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,077,793 - 84,502,831 (+)	NCBI
mRatBN7.2	17	79,169,238 - 79,594,279 (+)	NCBI

RefSeq Acc Id:

XM_039095940 ⟹ XP_038951868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,104,316 - 84,502,831 (+)	NCBI
mRatBN7.2	17	79,195,807 - 79,594,279 (+)	NCBI

RefSeq Acc Id:

XM_063276638 ⟹ XP_063132708

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,104,171 - 84,502,831 (+)	NCBI

RefSeq Acc Id:

XM_063276639 ⟹ XP_063132709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,104,326 - 84,502,831 (+)	NCBI

RefSeq Acc Id:

XM_063276640 ⟹ XP_063132710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,077,793 - 84,502,831 (+)	NCBI

RefSeq Acc Id:

XM_063276641 ⟹ XP_063132711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	84,191,557 - 84,502,831 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101892	(Get FASTA)	NCBI Sequence Viewer
	XP_017456122	(Get FASTA)	NCBI Sequence Viewer
	XP_038951863	(Get FASTA)	NCBI Sequence Viewer
	XP_038951864	(Get FASTA)	NCBI Sequence Viewer
	XP_038951865	(Get FASTA)	NCBI Sequence Viewer
	XP_038951866	(Get FASTA)	NCBI Sequence Viewer
	XP_038951867	(Get FASTA)	NCBI Sequence Viewer
	XP_038951868	(Get FASTA)	NCBI Sequence Viewer
	XP_063132708	(Get FASTA)	NCBI Sequence Viewer
	XP_063132709	(Get FASTA)	NCBI Sequence Viewer
	XP_063132710	(Get FASTA)	NCBI Sequence Viewer
	XP_063132711	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68868	(Get FASTA)	NCBI Sequence Viewer
	EDL78755	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000155
	ENSRNOP00000000155.6
	ENSRNOP00000080623
	ENSRNOP00000080623.2
	ENSRNOP00000106027
	ENSRNOP00000106027.1

RefSeq Acc Id:	NP_001101892 ⟸ NM_001108422
- Peptide Label:	precursor
- UniProtKB:	B5DEZ8 (UniProtKB/TrEMBL), F7EUH5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARFPRAHLAAAGVMLLCHFLTDRFQFAHGEPGHHMNDWKYVVANTSPQSEEGVEVDSQAYSHR WKRNVDPFKAVDTNRASMGQDSPESRGFPDLLLDDGQDNTTQIEEDTDHNYYISRIYGPADSAS RDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLNEVTVATGGFIYTGEVVHRM LTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRII FGYKEIPVLVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAV EMTPLPTCLQFNGCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEEVQSKEKMCEN TEPGETSQTTTTAQTTTTQFRVLTTTRRAVTSHMPTSLPTEDDTKIALHLKDSGASTDDSAAEK KGGTLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAY AEVEPVGEKEGFIVSEQC hide sequence

RefSeq Acc Id:	XP_017456122 ⟸ XM_017600633
- Peptide Label:	isoform X4
- UniProtKB:	F7EUH5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARFPRAHLAAAGVMLLCHFLTDRFQFAHGEPGHHMNDWKYVVANTSPQSEEGVEVDSQAYSHR WKRNVDPFKAVDTNRASMGQDSPESRGFPDLLLDDGQDNTTQIEEDTDHNYYISRIYGPADSAS RDLWVNIDQMEKDKVKIHGILSNTHRQAARVNLSFDFPFYGHFLNEVTVATGGFIYTGEVVHRM LTATQYIAPLMANFDPSVSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRII FGYKEIPVLVTQISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAV EMTPLPTCLQFNGCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKEKMCENTE PGETSQTTTTAQTTTTQFRVLTTTRRAVTSHMPTSLPTEDDTKIALHLKDSGASTDDSAAEKKG GTLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAYAE VEPVGEKEGFIVSEQC hide sequence

Ensembl Acc Id:

ENSRNOP00000000155 ⟸ ENSRNOT00000000155

RefSeq Acc Id:	XP_038951866 ⟸ XM_039095938
- Peptide Label:	isoform X3
- UniProtKB:	B5DEZ8 (UniProtKB/TrEMBL), F7EUH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951865 ⟸ XM_039095937
- Peptide Label:	isoform X3
- UniProtKB:	B5DEZ8 (UniProtKB/TrEMBL), F7EUH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951867 ⟸ XM_039095939
- Peptide Label:	isoform X3
- UniProtKB:	B5DEZ8 (UniProtKB/TrEMBL), F7EUH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951868 ⟸ XM_039095940
- Peptide Label:	isoform X3
- UniProtKB:	B5DEZ8 (UniProtKB/TrEMBL), F7EUH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951864 ⟸ XM_039095936
- Peptide Label:	isoform X2
- UniProtKB:	F7EUH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951863 ⟸ XM_039095935
- Peptide Label:	isoform X1
- UniProtKB:	F7EUH5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000080623 ⟸ ENSRNOT00000117521

RefSeq Acc Id:	XP_063132710 ⟸ XM_063276640
- Peptide Label:	isoform X3
- UniProtKB:	B5DEZ8 (UniProtKB/TrEMBL), F7EUH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132708 ⟸ XM_063276638
- Peptide Label:	isoform X3
- UniProtKB:	B5DEZ8 (UniProtKB/TrEMBL), F7EUH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132709 ⟸ XM_063276639
- Peptide Label:	isoform X3
- UniProtKB:	B5DEZ8 (UniProtKB/TrEMBL), F7EUH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132711 ⟸ XM_063276641
- Peptide Label:	isoform X5
- UniProtKB:	F7EUH5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000106027 ⟸ ENSRNOT00000134561

Protein Domains

PSI

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DEZ8-F1-model_v2	AlphaFold	B5DEZ8	1-530	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700603

Promoter ID:

EPDNEW_R11127

Type:

initiation region

Name:

Plxdc2_1

Description:

plexin domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	83,221,778 - 83,221,838	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305962	AgrOrtholog
BioCyc Gene	G2FUF-8583	BioCyc
Ensembl Genes	ENSRNOG00000000142	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000000155	ENTREZGENE
	ENSRNOT00000000155.6	UniProtKB/TrEMBL
	ENSRNOT00000117521	ENTREZGENE
	ENSRNOT00000117521.2	UniProtKB/TrEMBL
	ENSRNOT00000134561	ENTREZGENE
	ENSRNOT00000134561.1	UniProtKB/TrEMBL
InterPro	Plexin-like_fold	UniProtKB/TrEMBL
	Plexin_repeat	UniProtKB/TrEMBL
	PLXDC	UniProtKB/TrEMBL
KEGG Report	rno:361282	UniProtKB/TrEMBL
NCBI Gene	361282	ENTREZGENE
PANTHER	PTHR13055	UniProtKB/TrEMBL
	PTHR13055:SF11	UniProtKB/TrEMBL
Pfam	PSI	UniProtKB/TrEMBL
PhenoGen	Plxdc2	PhenoGen
RatGTEx	ENSRNOG00000000142	RatGTEx
SMART	PSI	UniProtKB/TrEMBL
UniProt	A0A8I5ZQ78_RAT	UniProtKB/TrEMBL
	A0ABK0LUU7_RAT	UniProtKB/TrEMBL
	B5DEZ8	ENTREZGENE, UniProtKB/TrEMBL
	F7EUH5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Plxdc2	plexin domain containing 2	LOC108348594	uncharacterized LOC108348594	Data merged from RGD:11376975	737654	PROVISIONAL
2016-08-02	LOC108348594	uncharacterized LOC108348594			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Plxdc2	plexin domain containing 2	Plxdc2_predicted	plexin domain containing 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Plxdc2_predicted	plexin domain containing 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message