Zbed4 (zinc finger, BED-type containing 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Zbed4 (zinc finger, BED-type containing 4) Rattus norvegicus
Analyze
Symbol: Zbed4
Name: zinc finger, BED-type containing 4
RGD ID: 1305949
Description: Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Orthologous to human ZBED4 (zinc finger BED-type containing 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC315211; zinc finger BED domain-containing protein 4; zinc finger, BED domain containing 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87121,723,130 - 121,763,180 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7121,716,932 - 121,769,805 (+)EnsemblGRCr8
mRatBN7.27119,846,374 - 119,883,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7119,843,169 - 119,883,899 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7121,598,077 - 121,635,190 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07123,824,258 - 123,861,371 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07123,787,501 - 123,824,615 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07129,749,714 - 129,787,093 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7129,749,714 - 129,787,093 (+)Ensemblrn6Rnor6.0
Rnor_5.07129,438,426 - 129,475,805 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47127,060,344 - 127,097,464 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7116,320,412 - 116,357,510 (+)NCBICelera
RGSC_v3.17127,126,887 - 127,130,975 (+)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19369242   PMID:21850176  


Genomics

Comparative Map Data
Zbed4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87121,723,130 - 121,763,180 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7121,716,932 - 121,769,805 (+)EnsemblGRCr8
mRatBN7.27119,846,374 - 119,883,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7119,843,169 - 119,883,899 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7121,598,077 - 121,635,190 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07123,824,258 - 123,861,371 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07123,787,501 - 123,824,615 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07129,749,714 - 129,787,093 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7129,749,714 - 129,787,093 (+)Ensemblrn6Rnor6.0
Rnor_5.07129,438,426 - 129,475,805 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47127,060,344 - 127,097,464 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7116,320,412 - 116,357,510 (+)NCBICelera
RGSC_v3.17127,126,887 - 127,130,975 (+)NCBI
Cytogenetic Map7q34NCBI
ZBED4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382249,852,850 - 49,890,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2249,853,827 - 49,897,383 (+)Ensemblhg38GRCh38
GRCh372250,247,492 - 50,283,728 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362248,633,501 - 48,669,730 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342248,568,389 - 48,602,951NCBI
Celera2234,169,009 - 34,205,150 (+)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,189,336 - 33,230,192 (+)NCBIHuRef
CHM1_12250,206,039 - 50,242,469 (+)NCBICHM1_1
T2T-CHM13v2.02250,357,143 - 50,394,562 (+)NCBIT2T-CHM13v2.0
Zbed4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391588,635,856 - 88,668,719 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1588,635,863 - 88,668,719 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381588,751,662 - 88,784,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1588,751,660 - 88,784,516 (+)Ensemblmm10GRCm38
MGSCv371588,582,141 - 88,614,946 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361588,582,531 - 88,612,282 (+)NCBIMGSCv36mm8
Celera1590,879,904 - 90,909,684 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.24NCBI
Zbed4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,007,750 - 33,021,180 (+)Ensembl
ChiLan1.0NW_00495541333,007,750 - 33,021,180 (+)NCBIChiLan1.0ChiLan1.0
ZBED4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22359,753,398 - 59,789,667 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,438,296 - 62,472,924 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,075,081 - 30,111,359 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,107,312 - 49,114,414 (+)NCBIPanPan1.1PanPan1.1panPan2
ZBED4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11017,313,750 - 17,343,609 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1017,315,015 - 17,318,512 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1017,293,071 - 17,322,809 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01018,042,805 - 18,072,766 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1018,042,826 - 18,072,764 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,765,773 - 17,795,673 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01018,088,795 - 18,118,715 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01018,221,006 - 18,250,725 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbed4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945864,946 - 888,651 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629864,993 - 888,159 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936629864,945 - 888,665 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBED4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5735,884 - 757,901 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.15735,882 - 758,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,930,350 - 110,947,040 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBED4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,349,021 - 32,382,481 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,377,676 - 32,381,191 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604593,007,884 - 93,046,019 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbed4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752764,368 - 767,868 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624752763,148 - 785,330 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zbed4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11258,077,947 - 258,116,525 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zbed4
431 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:88
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000006050
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7118556868125929417Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
AA893747  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22119,942,235 - 119,942,354 (+)MAPPERmRatBN7.2
mRatBN7.27119,883,109 - 119,883,228 (+)MAPPERmRatBN7.2
Rnor_6.02123,784,225 - 123,784,343NCBIRnor6.0
Rnor_6.07129,786,708 - 129,786,826NCBIRnor6.0
Rnor_5.02143,397,941 - 143,398,059UniSTSRnor5.0
Rnor_5.07129,475,420 - 129,475,538UniSTSRnor5.0
Celera7116,357,125 - 116,357,243UniSTS
Celera2114,897,277 - 114,897,395UniSTS
RH 3.4 Map7937.5UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006050   ⟹   ENSRNOP00000006050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,722,979 - 121,763,250 (+)Ensembl
mRatBN7.2 Ensembl7119,843,788 - 119,883,899 (+)Ensembl
Rnor_6.0 Ensembl7129,749,714 - 129,787,093 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100158   ⟹   ENSRNOP00000097227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,722,417 - 121,768,587 (+)Ensembl
mRatBN7.2 Ensembl7119,845,582 - 119,883,899 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103004   ⟹   ENSRNOP00000090260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,725,699 - 121,763,190 (+)Ensembl
mRatBN7.2 Ensembl7119,843,169 - 119,883,899 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109445   ⟹   ENSRNOP00000089850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,723,306 - 121,765,956 (+)Ensembl
mRatBN7.2 Ensembl7119,843,338 - 119,883,899 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109817   ⟹   ENSRNOP00000090286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,723,200 - 121,768,587 (+)Ensembl
mRatBN7.2 Ensembl7119,845,595 - 119,883,899 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112747   ⟹   ENSRNOP00000089515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,722,856 - 121,766,519 (+)Ensembl
mRatBN7.2 Ensembl7119,843,256 - 119,883,899 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000141220   ⟹   ENSRNOP00000103466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,720,881 - 121,769,805 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154647   ⟹   ENSRNOP00000111240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,722,662 - 121,766,952 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000165729   ⟹   ENSRNOP00000101655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,720,881 - 121,767,737 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172693   ⟹   ENSRNOP00000099612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7121,716,932 - 121,766,952 (+)Ensembl
RefSeq Acc Id: NM_001134800   ⟹   NP_001128272
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,723,152 - 121,763,180 (+)NCBI
mRatBN7.27119,846,374 - 119,883,495 (+)NCBI
Rnor_6.07129,749,714 - 129,787,093 (+)NCBI
Rnor_5.07129,438,426 - 129,475,805 (+)NCBI
RGSC_v3.47127,060,344 - 127,097,464 (+)RGD
Celera7116,320,412 - 116,357,510 (+)RGD
Sequence:
RefSeq Acc Id: XM_063263627   ⟹   XP_063119697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,723,130 - 121,763,180 (+)NCBI
RefSeq Acc Id: XM_063263628   ⟹   XP_063119698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,724,103 - 121,763,180 (+)NCBI
RefSeq Acc Id: XM_063263629   ⟹   XP_063119699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,723,130 - 121,763,180 (+)NCBI
RefSeq Acc Id: XM_063263630   ⟹   XP_063119700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,723,163 - 121,763,180 (+)NCBI
RefSeq Acc Id: XM_063263631   ⟹   XP_063119701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,724,103 - 121,763,180 (+)NCBI
RefSeq Acc Id: XM_063263632   ⟹   XP_063119702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87121,723,130 - 121,763,180 (+)NCBI
RefSeq Acc Id: NP_001128272   ⟸   NM_001134800
- UniProtKB: D3ZUV0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006050   ⟸   ENSRNOT00000006050
Ensembl Acc Id: ENSRNOP00000089850   ⟸   ENSRNOT00000109445
Ensembl Acc Id: ENSRNOP00000090286   ⟸   ENSRNOT00000109817
Ensembl Acc Id: ENSRNOP00000089515   ⟸   ENSRNOT00000112747
Ensembl Acc Id: ENSRNOP00000097227   ⟸   ENSRNOT00000100158
Ensembl Acc Id: ENSRNOP00000090260   ⟸   ENSRNOT00000103004
RefSeq Acc Id: XP_063119699   ⟸   XM_063263629
- Peptide Label: isoform X1
- UniProtKB: D3ZUV0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119697   ⟸   XM_063263627
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119702   ⟸   XM_063263632
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119700   ⟸   XM_063263630
- Peptide Label: isoform X1
- UniProtKB: D3ZUV0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119698   ⟸   XM_063263628
- Peptide Label: isoform X1
- UniProtKB: D3ZUV0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119701   ⟸   XM_063263631
- Peptide Label: isoform X1
- UniProtKB: D3ZUV0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111240   ⟸   ENSRNOT00000154647
Ensembl Acc Id: ENSRNOP00000103466   ⟸   ENSRNOT00000141220
Ensembl Acc Id: ENSRNOP00000101655   ⟸   ENSRNOT00000165729
Ensembl Acc Id: ENSRNOP00000099612   ⟸   ENSRNOT00000172693
Protein Domains
BED-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUV0-F1-model_v2 AlphaFold D3ZUV0 1-1171 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305949 AgrOrtholog
BioCyc Gene G2FUF-32488 BioCyc
Ensembl Genes ENSRNOG00000004588 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006050.8 UniProtKB/TrEMBL
  ENSRNOT00000100158.2 UniProtKB/TrEMBL
  ENSRNOT00000103004 ENTREZGENE
  ENSRNOT00000103004.2 UniProtKB/TrEMBL
  ENSRNOT00000109445.2 UniProtKB/TrEMBL
  ENSRNOT00000109817 ENTREZGENE
  ENSRNOT00000109817.2 UniProtKB/TrEMBL
  ENSRNOT00000112747 ENTREZGENE
  ENSRNOT00000112747.2 UniProtKB/TrEMBL
  ENSRNOT00000141220.1 UniProtKB/TrEMBL
  ENSRNOT00000154647.1 UniProtKB/TrEMBL
  ENSRNOT00000165729 ENTREZGENE
  ENSRNOT00000165729.1 UniProtKB/TrEMBL
  ENSRNOT00000172693.1 UniProtKB/TrEMBL
InterPro HATC_C_dom UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  Znf_BED UniProtKB/TrEMBL
  ZnF_BED_domain_contain UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:315211 UniProtKB/TrEMBL
NCBI Gene 315211 ENTREZGENE
PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam Dimer_Tnp_hAT UniProtKB/TrEMBL
  zf-BED UniProtKB/TrEMBL
PhenoGen Zbed4 PhenoGen
PROSITE ZF_BED UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004588 RatGTEx
SMART ZnF_BED UniProtKB/TrEMBL
Superfamily-SCOP Hermes dimerisation domain UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt D3ZUV0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-15 Zbed4  zinc finger, BED-type containing 4  Zbed4  zinc finger, BED domain containing 4   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zbed4  zinc finger, BED domain containing 4   Zbed4_predicted  zinc finger, BED domain containing 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zbed4_predicted  zinc finger, BED domain containing 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED