Ttc7b (tetratricopeptide repeat domain 7B) - Rat Genome Database

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Gene: Ttc7b (tetratricopeptide repeat domain 7B) Rattus norvegicus
Analyze
Symbol: Ttc7b
Name: tetratricopeptide repeat domain 7B
RGD ID: 1305920
Description: Predicted to be involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Predicted to be located in cytosol. Predicted to be active in plasma membrane. Orthologous to human TTC7B (tetratricopeptide repeat domain 7B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362768; tetratricopeptide repeat protein 7B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86125,317,011 - 125,528,843 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6125,316,789 - 125,528,779 (-)EnsemblGRCr8
mRatBN7.26119,587,389 - 119,799,167 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6119,587,390 - 119,799,330 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6119,749,522 - 119,962,198 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06120,046,181 - 120,258,858 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06119,381,052 - 119,593,712 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06124,316,444 - 124,528,058 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,316,445 - 124,429,701 (-)Ensemblrn6Rnor6.0
Rnor_5.06133,541,063 - 133,658,335 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46124,578,905 - 124,696,428 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6117,115,293 - 117,233,207 (-)NCBICelera
RGSC_v3.16124,583,485 - 124,795,884 (-)NCBI
Cytogenetic Map6q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-cotinine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetochlor  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
fenthion  (ISO)
fenvalerate  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
herbicide  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
lead(0)  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
nitrofen  (EXP)
O-methyleugenol  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23229899   PMID:26571211  


Genomics

Comparative Map Data
Ttc7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86125,317,011 - 125,528,843 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6125,316,789 - 125,528,779 (-)EnsemblGRCr8
mRatBN7.26119,587,389 - 119,799,167 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6119,587,390 - 119,799,330 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6119,749,522 - 119,962,198 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06120,046,181 - 120,258,858 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06119,381,052 - 119,593,712 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06124,316,444 - 124,528,058 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,316,445 - 124,429,701 (-)Ensemblrn6Rnor6.0
Rnor_5.06133,541,063 - 133,658,335 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46124,578,905 - 124,696,428 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6117,115,293 - 117,233,207 (-)NCBICelera
RGSC_v3.16124,583,485 - 124,795,884 (-)NCBI
Cytogenetic Map6q32NCBI
TTC7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381490,524,564 - 90,816,430 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1490,524,564 - 90,816,500 (-)Ensemblhg38GRCh38
GRCh371490,990,908 - 91,282,774 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361490,076,685 - 90,352,514 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341490,076,685 - 90,225,809NCBI
Celera1471,054,409 - 71,331,315 (-)NCBICelera
Cytogenetic Map14q32.11NCBI
HuRef1471,182,148 - 71,428,268 (-)NCBIHuRef
CHM1_11490,944,859 - 91,220,576 (-)NCBICHM1_1
T2T-CHM13v2.01484,749,718 - 85,042,042 (-)NCBIT2T-CHM13v2.0
Ttc7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,267,029 - 100,487,134 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,267,029 - 100,487,085 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3812100,300,770 - 100,520,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,300,770 - 100,520,826 (-)Ensemblmm10GRCm38
MGSCv3712101,538,980 - 101,759,032 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612100,701,442 - 100,930,473 (-)NCBIMGSCv36mm8
Celera12101,527,365 - 101,741,435 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1250.43NCBI
Ttc7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543812,946,549 - 13,187,375 (-)Ensembl
ChiLan1.0NW_00495543812,946,594 - 13,165,239 (-)NCBIChiLan1.0ChiLan1.0
TTC7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21591,681,971 - 91,957,349 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11490,898,477 - 91,173,852 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01471,158,480 - 71,433,819 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11490,509,829 - 90,755,349 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1490,509,829 - 90,759,714 (-)EnsemblpanPan2panpan1.1
TTC7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1861,509,290 - 61,735,155 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl861,509,992 - 61,735,141 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha861,089,423 - 61,339,811 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0861,783,401 - 62,034,052 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl861,783,405 - 62,034,058 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1861,464,134 - 61,714,524 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0861,512,971 - 61,763,667 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0861,842,390 - 62,093,099 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ttc7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864014,186,911 - 14,395,116 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648817,674,321 - 17,882,715 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648817,673,852 - 17,882,229 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7112,270,164 - 112,519,191 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.17112,270,161 - 112,519,123 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27118,837,346 - 119,047,933 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12468,285,785 - 68,565,119 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2468,285,761 - 68,565,066 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605355,557,488 - 55,828,437 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473411,698,512 - 11,935,245 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473411,698,514 - 11,935,122 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttc7b
1538 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:223
Count of miRNA genes:154
Interacting mature miRNAs:173
Transcripts:ENSRNOT00000037902
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat

Markers in Region
D6Hmgc19  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86125,414,191 - 125,414,329 (+)Marker Load Pipeline
mRatBN7.26119,684,572 - 119,684,710 (+)MAPPERmRatBN7.2
Rnor_6.06124,413,248 - 124,413,385NCBIRnor6.0
Rnor_5.06133,637,519 - 133,637,656UniSTSRnor5.0
Celera6117,212,602 - 117,212,739UniSTS
Cytogenetic Map6q32UniSTS
BE120202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26119,795,547 - 119,795,715 (+)MAPPERmRatBN7.2
Rnor_6.06124,524,636 - 124,524,803NCBIRnor6.0
Rnor_5.06133,748,907 - 133,749,074UniSTSRnor5.0
RGSC_v3.46124,786,986 - 124,787,153UniSTSRGSC3.4
Celera6117,323,323 - 117,323,490UniSTS
RH 3.4 Map6856.6UniSTS
Cytogenetic Map6q32UniSTS
RH140797  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26119,608,388 - 119,608,548 (+)MAPPERmRatBN7.2
Rnor_6.06124,337,108 - 124,337,267NCBIRnor6.0
Rnor_5.06133,561,727 - 133,561,886UniSTSRnor5.0
RGSC_v3.46124,599,904 - 124,600,063UniSTSRGSC3.4
Celera6117,136,412 - 117,136,571UniSTS
RH 3.4 Map6872.3UniSTS
Cytogenetic Map6q32UniSTS
BF391365  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26119,685,021 - 119,685,240 (+)MAPPERmRatBN7.2
Rnor_6.06124,413,697 - 124,413,915NCBIRnor6.0
Rnor_5.06133,637,968 - 133,638,186UniSTSRnor5.0
RGSC_v3.46124,676,265 - 124,676,483UniSTSRGSC3.4
Celera6117,213,051 - 117,213,269UniSTS
RH 3.4 Map6872.3UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000037902   ⟹   ENSRNOP00000036097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6119,587,390 - 119,700,874 (-)Ensembl
Rnor_6.0 Ensembl6124,316,445 - 124,429,701 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080950   ⟹   ENSRNOP00000070298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6125,316,789 - 125,528,779 (-)Ensembl
mRatBN7.2 Ensembl6119,587,390 - 119,799,330 (-)Ensembl
Rnor_6.0 Ensembl6124,317,278 - 124,429,701 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099229   ⟹   ENSRNOP00000091624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6125,317,011 - 125,528,779 (-)Ensembl
mRatBN7.2 Ensembl6119,587,390 - 119,799,330 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108767   ⟹   ENSRNOP00000089503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6125,317,011 - 125,528,779 (-)Ensembl
mRatBN7.2 Ensembl6119,587,390 - 119,799,330 (-)Ensembl
RefSeq Acc Id: NM_001108719   ⟹   NP_001102189
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,317,011 - 125,528,779 (-)NCBI
mRatBN7.26119,587,389 - 119,799,167 (-)NCBI
Rnor_6.06124,316,444 - 124,434,064 (-)NCBI
Rnor_5.06133,541,063 - 133,658,335 (-)NCBI
RGSC_v3.46124,578,905 - 124,696,428 (-)RGD
Celera6117,115,293 - 117,233,207 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401371   ⟹   NP_001388300
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,317,011 - 125,528,779 (-)NCBI
mRatBN7.26119,587,389 - 119,799,167 (-)NCBI
RefSeq Acc Id: NM_001401373   ⟹   NP_001388302
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,317,011 - 125,528,779 (-)NCBI
mRatBN7.26119,587,389 - 119,799,167 (-)NCBI
RefSeq Acc Id: XM_039112520   ⟹   XP_038968448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,317,011 - 125,528,843 (-)NCBI
mRatBN7.26119,587,389 - 119,799,154 (-)NCBI
RefSeq Acc Id: XM_039112527   ⟹   XP_038968455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,317,011 - 125,528,843 (-)NCBI
mRatBN7.26119,587,389 - 119,799,153 (-)NCBI
RefSeq Acc Id: XM_063262123   ⟹   XP_063118193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,317,011 - 125,528,843 (-)NCBI
RefSeq Acc Id: XM_063262124   ⟹   XP_063118194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,318,073 - 125,528,843 (-)NCBI
RefSeq Acc Id: XM_063262125   ⟹   XP_063118195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,317,011 - 125,506,475 (-)NCBI
RefSeq Acc Id: XM_063262126   ⟹   XP_063118196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86125,317,011 - 125,430,407 (-)NCBI
RefSeq Acc Id: NP_001102189   ⟸   NM_001108719
- Peptide Label: isoform 3
- UniProtKB: A0A0G2JXJ6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070298   ⟸   ENSRNOT00000080950
Ensembl Acc Id: ENSRNOP00000036097   ⟸   ENSRNOT00000037902
RefSeq Acc Id: XP_038968448   ⟸   XM_039112520
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968455   ⟸   XM_039112527
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000091624   ⟸   ENSRNOT00000099229
Ensembl Acc Id: ENSRNOP00000089503   ⟸   ENSRNOT00000108767
RefSeq Acc Id: NP_001388302   ⟸   NM_001401373
- Peptide Label: isoform 2
- UniProtKB: A0A8I6AFJ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388300   ⟸   NM_001401371
- Peptide Label: isoform 1
- UniProtKB: A0A8I6A7F1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118193   ⟸   XM_063262123
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063118195   ⟸   XM_063262125
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063118196   ⟸   XM_063262126
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063118194   ⟸   XM_063262124
- Peptide Label: isoform X4
Protein Domains
Tetratricopeptide repeat protein 7 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXJ6-F1-model_v2 AlphaFold A0A0G2JXJ6 1-584 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305920 AgrOrtholog
BioCyc Gene G2FUF-36496 BioCyc
Ensembl Genes ENSRNOG00000027300 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080950 ENTREZGENE
  ENSRNOT00000080950.3 UniProtKB/TrEMBL
  ENSRNOT00000099229 ENTREZGENE
  ENSRNOT00000099229.2 UniProtKB/TrEMBL
  ENSRNOT00000108767 ENTREZGENE
  ENSRNOT00000108767.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro Endocytosis_PI4K-reg_protein UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  TTC7_N UniProtKB/TrEMBL
KEGG Report rno:362768 UniProtKB/TrEMBL
NCBI Gene 362768 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 7B UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN, TPR UniProtKB/TrEMBL
Pfam ANAPC3 UniProtKB/TrEMBL
  TPR_12 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
  TTC7_N UniProtKB/TrEMBL
PhenoGen Ttc7b PhenoGen
PROSITE TPR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027300 RatGTEx
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0G2JXJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7F1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFJ5 ENTREZGENE, UniProtKB/TrEMBL
  B5DFB4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ttc7b  tetratricopeptide repeat domain 7B   Ttc7b_predicted  tetratricopeptide repeat domain 7B (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ttc7b_predicted  tetratricopeptide repeat domain 7B (predicted)      Symbol and Name status set to approved 70820 APPROVED