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Gene: Mrrf (mitochondrial ribosome recycling factor) Rattus norvegicus

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Symbol:

Mrrf

Name:

mitochondrial ribosome recycling factor

RGD ID:

1305897

Description:

Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in ribosome disassembly and translation. Predicted to be active in mitochondrion. Orthologous to human MRRF (mitochondrial ribosome recycling factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC311903; MGC93722; ribosome-recycling factor, mitochondrial; ribosome-releasing factor, mitochondrial; RRF

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRRF (mitochondrial ribosome recycling factor)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mrrf (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrrf (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRRF (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRRF (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrrf (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRRF (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRRF (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrrf (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mrrf (mitochondrial ribosome recycling factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MRRFP1 (mitochondrial ribosome recycling factor pseudogene 1)	HGNC	Inparanoid
Alliance orthologs ³
Homo sapiens (human):	MRRF (mitochondrial ribosome recycling factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mrrf (mitochondrial ribosome recycling factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mrrf (mitochondrial ribosome recycling factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mrrf-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	mrrf-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RRF1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	mRRF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mrrf	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	mrrf	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	39,884,530 - 39,941,317 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	39,884,359 - 39,967,397 (+)	Ensembl				GRCr8
mRatBN7.2	3	19,487,124 - 19,543,911 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	19,487,182 - 19,543,908 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	22,565,702 - 22,621,781 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	31,150,632 - 31,206,709 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	29,397,780 - 29,454,451 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	15,463,884 - 15,520,621 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	15,463,953 - 15,520,618 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	20,773,131 - 20,829,833 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	15,247,054 - 15,303,722 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	14,199,058 - 14,255,750 (+)	NCBI		Celera
RGSC_v3.1	3	15,143,425 - 15,200,091 (+)	NCBI
Cytogenetic Map	3	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

myoepithelioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrotoluene (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cis-caffeic acid (ISO)

corosolic acid (ISO)

dorsomorphin (ISO)

folic acid (ISO)

formaldehyde (ISO)

hydralazine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

ozone (ISO)

p-toluidine (EXP)

pirinixic acid (ISO)

propiconazole (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

thapsigargin (ISO)

titanium dioxide (ISO)

trans-caffeic acid (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ribosome disassembly (IEA,ISO,ISS)

translation (IBA,IEA)

Cellular Component

mitochondrion (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

ribosomal large subunit binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:18614015	PMID:19716793	PMID:34800366

Genomics

Comparative Map Data

Mrrf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	39,884,530 - 39,941,317 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	39,884,359 - 39,967,397 (+)	Ensembl				GRCr8
mRatBN7.2	3	19,487,124 - 19,543,911 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	19,487,182 - 19,543,908 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	22,565,702 - 22,621,781 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	31,150,632 - 31,206,709 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	29,397,780 - 29,454,451 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	15,463,884 - 15,520,621 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	15,463,953 - 15,520,618 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	20,773,131 - 20,829,833 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	15,247,054 - 15,303,722 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	14,199,058 - 14,255,750 (+)	NCBI		Celera
RGSC_v3.1	3	15,143,425 - 15,200,091 (+)	NCBI
Cytogenetic Map	3	p11	NCBI

MRRF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	122,264,882 - 122,331,337 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	122,264,603 - 122,331,337 (+)	Ensembl			hg38	GRCh38
GRCh37	9	125,027,161 - 125,093,616 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,066,968 - 124,125,564 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	95,675,208 - 95,734,069 (+)	NCBI		Celera
Cytogenetic Map	9	q33.2	NCBI
HuRef	9	94,641,577 - 94,700,513 (+)	NCBI		HuRef
CHM1_1	9	125,174,951 - 125,233,831 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	134,462,401 - 134,528,846 (+)	NCBI		T2T-CHM13v2.0

Mrrf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	36,025,672 - 36,080,296 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	36,026,401 - 36,080,659 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	36,135,660 - 36,190,284 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	36,136,389 - 36,190,647 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	35,991,918 - 36,045,804 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	35,992,187 - 36,045,390 (+)	NCBI		MGSCv36	mm8
Celera	2	35,840,067 - 35,880,949 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	24.19	NCBI

Mrrf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	5,750,344 - 5,800,723 (-)	Ensembl
ChiLan1.0	NW_004955419	5,750,344 - 5,800,723 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRRF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	17,022,748 - 17,081,613 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	17,019,768 - 17,083,962 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	93,389,726 - 93,448,596 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	121,730,540 - 121,792,006 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	121,730,783 - 121,790,157 (+)	Ensembl			panPan2	panpan1.1

MRRF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	60,256,728 - 60,314,561 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	60,258,977 - 60,314,864 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	59,452,180 - 59,509,992 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	61,171,660 - 61,229,626 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	61,171,670 - 61,229,627 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	59,946,110 - 60,003,875 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	60,262,208 - 60,320,168 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	60,350,840 - 60,408,865 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mrrf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	190,881,063 - 190,931,689 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	10,649,373 - 10,702,001 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	10,649,395 - 10,700,211 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRRF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	262,353,032 - 262,418,243 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	262,355,994 - 262,416,116 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	294,656,012 - 294,713,765 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRRF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	17,266,365 - 17,330,768 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	17,263,882 - 17,330,341 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666035	25,719,030 - 25,783,783 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrrf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	12,971,493 - 13,032,291 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	12,974,428 - 13,032,016 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mrrf
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	13,287,001 - 13,339,194 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mrrf
430 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	460
Count of miRNA genes:	234
Interacting mature miRNAs:	300
Transcripts:	ENSRNOT00000033047
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	37772258	55937853	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	37796919	53640235	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	38708931	67641995	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	38708931	67641995	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	38708931	67641995	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	38708931	67641995	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	38708931	67641995	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	67641995	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	38708931	67641995	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	37796919	47904329	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	37796919	59119581	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH132526

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	3	p11	UniSTS

BQ205974

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	19,505,782 - 19,505,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	15,482,493 - 15,482,665	NCBI	Rnor6.0
Rnor_5.0	3	20,791,705 - 20,791,877	UniSTS	Rnor5.0
RGSC_v3.4	3	15,265,594 - 15,265,766	UniSTS	RGSC3.4
Celera	3	14,217,598 - 14,217,770	UniSTS
RH 3.4 Map	3	212.02	UniSTS
Cytogenetic Map	3	p11	UniSTS

UniSTS:234165

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	11,690,085 - 11,690,314 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	9,282,585 - 9,282,813	NCBI	Rnor6.0
Rnor_5.0	2	9,162,877 - 9,163,105	UniSTS	Rnor5.0
Celera	2	8,052,144 - 8,052,372	UniSTS
Cytogenetic Map	2	q11	UniSTS
Cytogenetic Map	3	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033047 ⟹ ENSRNOP00000038041

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	39,884,359 - 39,941,314 (+)	Ensembl
mRatBN7.2 Ensembl	3	19,487,243 - 19,543,908 (+)	Ensembl
Rnor_6.0 Ensembl	3	15,463,953 - 15,520,618 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113456 ⟹ ENSRNOP00000083698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	39,884,359 - 39,939,700 (+)	Ensembl
mRatBN7.2 Ensembl	3	19,487,182 - 19,541,686 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144190 ⟹ ENSRNOP00000106096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	39,884,359 - 39,967,397 (+)	Ensembl

RefSeq Acc Id:

NM_001008354 ⟹ NP_001008355

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	39,884,649 - 39,941,317 (+)	NCBI
mRatBN7.2	3	19,487,243 - 19,543,911 (+)	NCBI
Rnor_6.0	3	15,463,953 - 15,520,621 (+)	NCBI
Rnor_5.0	3	20,773,131 - 20,829,833 (+)	NCBI
RGSC_v3.4	3	15,247,054 - 15,303,722 (+)	RGD
Celera	3	14,199,058 - 14,255,750 (+)	RGD

Sequence:

show sequence

CTATAATCCCGGCTGTAGCTGTGGCTGCTTCTGAGGATTCTCTCCCGTCATGGCCTTGGGAATA
AGATGCTTTCGCCTACTACATCCTGCCTTTAGCAGCTACCTGGCTGATTTGAGCAGACCTGTTT
CAGAAGTTCCCATGAAGACAGTGCGAGGAAGACAACGTGACCATATACAGTACTCAGCCCACCC
AGCAGTGCCAGTTCGCCAGTTTGCAACCAAGAAGGCCAAAGCCAAAGGGAAAGGACAGCCCCAG
GCCAGAGTGAACATTAACACTGCCTTGGTTGAGGACATAATCAGTTTGGAAGAGGTGGATGAAG
ACATGAAATCTGTGATGGAAGCACTTAAAGATAATTTCAATAAGACTCTCAACATAAGGACTGC
ACCAGGATCCCTTGATCATATTACTGTGGTAACTGCTGATGGGAAGCTTGCTCTAAACCAGATT
GGCCAGATCTCCATGAAGTCGCCACAGTTGATTCTGGTGAATATGGCCAGCTTCCCAGAGTGTA
CAGCTGCAGCTATCAAGGCTATAAGAGAAAGTGGAATGAATCTGAACCCAGAAGTGGAAGGAAC
ACTAATTCGGGTACCCATTCCTAAAGTAACCAGGGAACACAGAGAAATGCTGGTGAAACTGGCC
AAACAGAACACCAACAAAGCCAAAGAAAATTTACGGAAGGTTCGCACTAATGCAATGAATAAAC
TGAAGAAGTCAAAGGACAAAACCTCAGAGGACACCATTAGGCTCATCGAGAAGCAGATCAGCCA
AATGGCAGACGACACGGTGGCGGAGCTGGACCGGCATCTGGCAGCAAAGACCAAAGAACTTCTT
GGATGAAAGTCAGCAGTCACAGCCGAGCACCAGTGTCTGCTCATGCAGTGGGTGGCAAGCGTGT
GCGCCCACTGCCCTGACCATCCATCATGCAGTGGGTGGCAAGCGTGTGCGCCCACTGCCCTGAC
CATCCATGGGAGGCTGACACTGCTGCTCCTCCGTCAGCCACTCAGCTTCCTGTTGGGATGCTCA
GACGTATGGAATCTCTTCCTCGTTTCCTTGCTCTGCTCAGAATCTCCTGGTGTGAAGGCCCTCA
GAGAATGTCTCCTGGTGTGAAGGCCCTCAGAGAATGTCTCCTGGTGTGAAGGCAGAGGACCTTT
ACTCTGGCAGTGACCATGACTGTGGTGTCATGGCAAGACTAGGGCCACCGTCAGGCTTAGCAGC
TCCTCTCTTCAACATAGGAGCCTCCTTTCAAACTGTGAATCATCCCCTGCCCTTGTGTTAAACT
CATTTGGATTAACGTGGACCTTCAGTCCAACTGCTAATGATCAAGCCTAAATAAATTGGAAAAT
AACAACCACAGAGGAAAGAGAGAGAGGTTTGGATGGAAAGCCCCAGTGCTTGTTTATAAAGCAA
CCAAGAGCAATGCTTTTGCCTCTAGGTTGTCGTCCCACATGCTGTTCTATGTGGACCGAGCTTC
CGCTCCTAACAACCAGCCCTGTTTACTGTGGTCAGTTGCTCCCTCTGGGCAGTCTCTCTGCCTC
CAGATTAGGCCCCAGTTTTGGCTGGGCTACTCTTATTTAAACCTCTGTTTTTCTTTTCTGTTAG
TCTATATCTGGAGAAAAATTACCAGAGAGAATGACACAGTAACACTTGAAGTTGTCCATGTATT
TATGCTGTGAGATTGTTAGCTGCTCTCCAAATGTTTTTCTTCTCTCCGTCACTCCACTCTTGTC
TCTGTCAACATTTATTTGGTAATGAGCTACTATTTCTCCTGATAGACAGGTCCTTTGTTGTGAC
TGTCTTTTTCTTCTTCTTTTCATTGCTGTTTGCCGTGCCATCGCTTTCGTGTAGAGGTCAGGTC
AGACAGCTCCCAGGAGTCAGCTCTCACCTTGTGGGATGGACCCAGATCCTCCCTACCAAGCACC
TTTGTCTGCTGAGTCATCTCACTTGCTGCGCTGTGGCTTTCAGTGCCAAGTTAAGTCAGTCATT
TTTCCCTTCCCCTGCAGACATTCCTTCATTCATTTAATTATAATAAAGCTATATTTAGGCATTA
TTTGTAATCACAAAACGAGACAGATACCTGCACTTACAAATATGGAAACTGGCACGGCAGTGTT
AGGTACTGAGTCCTCCAGACAGTGGAGTGGGAAAGTGGTGGGACATTTTATTTTCCTTTCTTTT
TCTGATAACAAGGTCACTCTACATAGCCCTAACTGTCCTGGAGCTCACTCTGTATACCAACTGT
GCTGGCCTTGAACTCGGTACTCCTGCCTCAGCTTCTCGAGTGCTTAGTTTAAAGGTGTGGGCCA
CTGCCCAGCTAGGGGCATTTCCATTGTACAAGATGCAGTTTCTCAAGCCCTGTCATACAGCCAG
CAAGCGGCTAGGCAGAGAGAAAAGTTGTAGGCTTGATTCCAGAGTCTGTTCTTTCCACCGAACA
GAGTGAGAGGCGAATGACCATTTCCACCACATACCGAGCGGTTCTCCAGTGCAGACCAACCAGG
TATCCGGTATGGAGTCAATTCTGAGACATAACTACCTGTGGAGTCTGGGGTTCTGCACTCCGCC
CTGAAAAATGCCCTATTTTTCTGACAACAATCGCAAGTCTGGACCACACAAACCTAGTTCCCGG
CCCCCCCCTTTGATCTGGTTAATCAGCGGATGATGCTCAGGGCTTGGGAGGTAGGTTTTCTGGC
TTTTTATAAAGCATGCTCTGAGGCGTACAGATGAACACGATTCAGGGGATTAGGGGAGGTGGGA
TACTGGGAAGCAGGAATATGCTCCGAGGCACCCTGGGTGGCCACATTCCCAGCACTGCCAGATT
GTCCAACCTGAAGAAGCCACTGCCACCTGCTGTCCTGTCAGGACGCAGTGGGCACCAGCTGTTT
CTCCCGTGCCCTATTATGTGCTAGAACACAGAGGCTGCTGGGCTGTGACTGCTGGCTTTGAGCA
GTGCCACTACACTGAACTGAGTGGCCCTCACAGTGCCCCAAGCAGGAAGGTCTGTTCGAGGTCT
AGGTGGTGAGATGTGGCTCAAGGAACCTGCGCTAGCTACTAAAGCTGCTGCTGCTGCTGCCTCT
GCCCACACTAGTGGGACCTGCTGGGAAATAGCCAGTGCGAATTAGGACTAGGCCAGGGATGAAA
GGAACTAACATGCCCTCCCACCCCATTTACTTACCCTCAAAGCCAGAGACAAATGGGAAGTTAG
GCTGCCAGGGGAGAGCTTCTGGAGCCACAAGGTGGAGGCTTTGCCAGGGTTCAGTTCTGCGAGT
GACCAGAATTCTCGCTGCAAATGTGCTGCTCAAAGATGCAGGATTTTTTTTTAATAAACAGAGG
AAATGATAAATTATGTTGTAACTCCACTCCAAAGGCATTTGGTTCTTAACAGCCAAATCCTCTG
TAGTCTTTAAATAAACAAAACTTATTTGGTGAACAGACGGGGGTGGGGAGGGATGAAAGATTTT
CAGTACTTGGGTTCCACATGTCAACAATTTCTCTCCTGTGTGTATGTTGGCCAAAGCCATATAT
CATGATAAATGAATAAAGGAAAGCCCTGAGCCCAGGGCGGTGAGACAGCTCAGCAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234069 ⟹ XP_006234131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	39,884,530 - 39,941,317 (+)	NCBI
mRatBN7.2	3	19,487,124 - 19,543,911 (+)	NCBI
Rnor_6.0	3	15,463,884 - 15,520,621 (+)	NCBI
Rnor_5.0	3	20,773,131 - 20,829,833 (+)	NCBI

Sequence:

show sequence

GCGCCGCCGCGCCAGCCCGTGACGTCATGACGCCCGCACCTCCGCCTCCGCTGTCCCGCGTGTG
TTTCTCTATAATCCCGGCTGTAGCTGTGGCTGCTTCTGAGGATTCTCTCCCGTCATGGCCTTGG
GAATAAGATGCTTTCGCCTACTACATCCTGCCTTTAGCAGCTACCTGGCTGATTTGAGCAGACC
TGTTTCAGAAGTTCCCATGAAGACAGTGCGAGGAAGACAACGTGACCATATACAGTACTCAGCC
CACCCAGCAGTGCCAGTTCGCCAGTTTGCAACCAAGAAGGCCAAAGGATCCCTTGATCATATTA
CTGTGGTAACTGCTGATGGGAAGCTTGCTCTAAACCAGATTGGCCAGATCTCCATGAAGTCGCC
ACAGTTGATTCTGGTGAATATGGCCAGCTTCCCAGAGTGTACAGCTGCAGCTATCAAGGCTATA
AGAGAAAGTGGAATGAATCTGAACCCAGAAGTGGAAGGAACACTAATTCGGGTACCCATTCCTA
AAGTAACCAGGGAACACAGAGAAATGCTGGTGAAACTGGCCAAACAGAACACCAACAAAGCCAA
AGAAAATTTACGGAAGGTTCGCACTAATGCAATGAATAAACTGAAGAAGTCAAAGGACAAAACC
TCAGAGGACACCATTAGGCTCATCGAGAAGCAGATCAGCCAAATGGCAGACGACACGGTGGCGG
AGCTGGACCGGCATCTGGCAGCAAAGACCAAAGAACTTCTTGGATGAAAGTCAGCAGTCACAGC
CGAGCACCAGTGTCTGCTCATGCAGTGGGTGGCAAGCGTGTGCGCCCACTGCCCTGACCATCCA
TCATGCAGTGGGTGGCAAGCGTGTGCGCCCACTGCCCTGACCATCCATGGGAGGCTGACACTGC
TGCTCCTCCGTCAGCCACTCAGCTTCCTGTTGGGATGCTCAGACGTATGGAATCTCTTCCTCGT
TTCCTTGCTCTGCTCAGAATCTCCTGGTGTGAAGGCCCTCAGAGAATGTCTCCTGGTGTGAAGG
CCCTCAGAGAATGTCTCCTGGTGTGAAGGCAGAGGACCTTTACTCTGGCAGTGACCATGACTGT
GGTGTCATGGCAAGACTAGGGCCACCGTCAGGCTTAGCAGCTCCTCTCTTCAACATAGGAGCCT
CCTTTCAAACTGTGAATCATCCCCTGCCCTTGTGTTAAACTCATTTGGATTAACGTGGACCTTC
AGTCCAACTGCTAATGATCAAGCCTAAATAAATTGGAAAATAACAACCACAGAGGAAAGAGAGA
GAGGTTTGGATGGAAAGCCCCAGTGCTTGTTTATAAAGCAACCAAGAGCAATGCTTTTGCCTCT
AGGTTGTCGTCCCACATGCTGTTCTATGTGGACCGAGCTTCCGCTCCTAACAACCAGCCCTGTT
TACTGTGGTCAGTTGCTCCCTCTGGGCAGTCTCTCTGCCTCCAGATTAGGCCCCAGTTTTGGCT
GGGCTACTCTTATTTAAACCTCTGTTTTTCTTTTCTGTTAGTCTATATCTGGAGAAAAATTACC
AGAGAGAATGACACAGTAACACTTGAAGTTGTCCATGTATTTATGCTGTGAGATTGTTAGCTGC
TCTCCAAATGTTTTTCTTCTCTCCGTCACTCCACTCTTGTCTCTGTCAACATTTATTTGGTAAT
GAGCTACTATTTCTCCTGATAGACAGGTCCTTTGTTGTGACTGTCTTTTTCTTCTTCTTTTCAT
TGCTGTTTGCCGTGCCATCGCTTTCGTGTAGAGGTCAGGTCAGACAGCTCCCAGGAGTCAGCTC
TCACCTTGTGGGATGGACCCAGATCCTCCCTACCAAGCACCTTTGTCTGCTGAGTCATCTCACT
TGCTGCGCTGTGGCTTTCAGTGCCAAGTTAAGTCAGTCATTTTTCCCTTCCCCTGCAGACATTC
CTTCATTCATTTAATTATAATAAAGCTATATTTAGGCATTATTTGTAATCACAAAACGAGACAG
ATACCTGCACTTACAAATATGGAAACTGGCACGGCAGTGTTAGGTACTGAGTCCTCCAGACAGT
GGAGTGGGAAAGTGGTGGGACATTTTATTTTCCTTTCTTTTTCTGATAACAAGGTCACTCTACA
TAGCCCTAACTGTCCTGGAGCTCACTCTGTATACCAACTGTGCTGGCCTTGAACTCGGTACTCC
TGCCTCAGCTTCTCGAGTGCTTAGTTTAAAGGTGTGGGCCACTGCCCAGCTAGGGGCATTTCCA
TTGTACAAGATGCAGTTTCTCAAGCCCTGTCATACAGCCAGCAAGCGGCTAGGCAGAGAGAAAA
GTTGTAGGCTTGATTCCAGAGTCTGTTCTTTCCACCGAACAGAGTGAGAGGCGAATGACCATTT
CCACCACATACCGAGCGGTTCTCCAGTGCAGACCAACCAGGTATCCGGTATGGAGTCAATTCTG
AGACATAACTACCTGTGGAGTCTGGGGTTCTGCACTCCGCCCTGAAAAATGCCCTATTTTTCTG
ACAACAATCGCAAGTCTGGACCACACAAACCTAGTTCCCGGCCCCCCCCTTTGATCTGGTTAAT
CAGCGGATGATGCTCAGGGCTTGGGAGGTAGGTTTTCTGGCTTTTTATAAAGCATGCTCTGAGG
CGTACAGATGAACACGATTCAGGGGATTAGGGGAGGTGGGATACTGGGAAGCAGGAATATGCTC
CGAGGCACCCTGGGTGGCCACATTCCCAGCACTGCCAGATTGTCCAACCTGAAGAAGCCACTGC
CACCTGCTGTCCTGTCAGGACGCAGTGGGCACCAGCTGTTTCTCCCGTGCCCTATTATGTGCTA
GAACACAGAGGCTGCTGGGCTGTGACTGCTGGCTTTGAGCAGTGCCACTACACTGAACTGAGTG
GCCCTCACAGTGCCCCAAGCAGGAAGGTCTGTTCGAGGTCTAGGTGGTGAGATGTGGCTCAAGG
AACCTGCGCTAGCTACTAAAGCTGCTGCTGCTGCTGCCTCTGCCCACACTAGTGGGACCTGCTG
GGAAATAGCCAGTGCGAATTAGGACTAGGCCAGGGATGAAAGGAACTAACATGCCCTCCCACCC
CATTTACTTACCCTCAAAGCCAGAGACAAATGGGAAGTTAGGCTGCCAGGGGAGAGCTTCTGGA
GCCACAAGGTGGAGGCTTTGCCAGGGTTCAGTTCTGCGAGTGACCAGAATTCTCGCTGCAAATG
TGCTGCTCAAAGATGCAGGATTTTTTTTTAATAAACAGAGGAAATGATAAATTATGTTGTAACT
CCACTCCAAAGGCATTTGGTTCTTAACAGCCAAATCCTCTGTAGTCTTTAAATAAACAAAACTT
ATTTGGTGAACAGACGGGGGTGGGGAGGGATGAAAGATTTTCAGTACTTGGGTTCCACATGTCA
ACAATTTCTCTCCTGTGTGTATGTTGGCCAAAGCCATATATCATGATAAATGAATAAAGGAAAG
CCCTGAGCCCAGGGCGGTGAGACAGCTCAGCAAA

hide sequence

RefSeq Acc Id:

XM_039105266 ⟹ XP_038961194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	39,884,946 - 39,941,317 (+)	NCBI
mRatBN7.2	3	19,487,380 - 19,543,911 (+)	NCBI

RefSeq Acc Id:

XM_039105267 ⟹ XP_038961195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	39,884,530 - 39,941,317 (+)	NCBI
mRatBN7.2	3	19,487,124 - 19,543,911 (+)	NCBI

RefSeq Acc Id:

XM_039105268 ⟹ XP_038961196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	39,889,513 - 39,941,317 (+)	NCBI
mRatBN7.2	3	19,492,107 - 19,543,911 (+)	NCBI

RefSeq Acc Id:

XM_063283973 ⟹ XP_063140043

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	39,884,946 - 39,941,317 (+)	NCBI

RefSeq Acc Id:

XM_063283974 ⟹ XP_063140044

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	39,884,530 - 39,941,317 (+)	NCBI

RefSeq Acc Id:

XM_063283975 ⟹ XP_063140045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	39,884,530 - 39,901,654 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008355	(Get FASTA)	NCBI Sequence Viewer
	XP_006234131	(Get FASTA)	NCBI Sequence Viewer
	XP_038961194	(Get FASTA)	NCBI Sequence Viewer
	XP_038961195	(Get FASTA)	NCBI Sequence Viewer
	XP_038961196	(Get FASTA)	NCBI Sequence Viewer
	XP_063140043	(Get FASTA)	NCBI Sequence Viewer
	XP_063140044	(Get FASTA)	NCBI Sequence Viewer
	XP_063140045	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85779	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038041
	ENSRNOP00000038041.3
	ENSRNOP00000083698
GenBank Protein	Q5RKI9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001008355 ⟸ NM_001008354
- Peptide Label:	precursor
- UniProtKB:	Q5RKI9 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MALGIRCFRLLHPAFSSYLADLSRPVSEVPMKTVRGRQRDHIQYSAHPAVPVRQFATKKAKAKG KGQPQARVNINTALVEDIISLEEVDEDMKSVMEALKDNFNKTLNIRTAPGSLDHITVVTADGKL ALNQIGQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREM LVKLAKQNTNKAKENLRKVRTNAMNKLKKSKDKTSEDTIRLIEKQISQMADDTVAELDRHLAAK TKELLG hide sequence

RefSeq Acc Id:

XP_006234131 ⟸ XM_006234069

- Peptide Label:

isoform X3

- Sequence:

show sequence

MALGIRCFRLLHPAFSSYLADLSRPVSEVPMKTVRGRQRDHIQYSAHPAVPVRQFATKKAKGSL
DHITVVTADGKLALNQIGQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
PIPKVTREHREMLVKLAKQNTNKAKENLRKVRTNAMNKLKKSKDKTSEDTIRLIEKQISQMADD
TVAELDRHLAAKTKELLG

hide sequence

Ensembl Acc Id:

ENSRNOP00000038041 ⟸ ENSRNOT00000033047

RefSeq Acc Id:	XP_038961195 ⟸ XM_039105267
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6G9D1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961194 ⟸ XM_039105266
- Peptide Label:	isoform X1
- UniProtKB:	Q5RKI9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038961196 ⟸ XM_039105268
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000083698 ⟸ ENSRNOT00000113456

RefSeq Acc Id:	XP_063140044 ⟸ XM_063283974
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063140045 ⟸ XM_063283975
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063140043 ⟸ XM_063283973
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000106096 ⟸ ENSRNOT00000144190

Protein Domains

Ribosome recycling factor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5RKI9-F1-model_v2	AlphaFold	Q5RKI9	1-262	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692024

Promoter ID:

EPDNEW_R2548

Type:

multiple initiation site

Name:

Mrrf_1

Description:

mitochondrial ribosome recycling factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	15,463,919 - 15,463,979	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305897	AgrOrtholog
BioCyc Gene	G2FUF-50013	BioCyc
Ensembl Genes	ENSRNOG00000025997	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000033047	ENTREZGENE
	ENSRNOT00000033047.4	UniProtKB/Swiss-Prot
	ENSRNOT00000113456	ENTREZGENE
Gene3D-CATH	1.10.132.20	UniProtKB/Swiss-Prot
	3.30.1360.40	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7106905	IMAGE-MGC_LOAD
InterPro	Ribosome_recyc_fac	UniProtKB/Swiss-Prot
	Ribosome_recyc_fac_dom	UniProtKB/Swiss-Prot
	RRF_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:311903	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93722	IMAGE-MGC_LOAD
NCBI Gene	311903	ENTREZGENE
PANTHER	PTHR20982	UniProtKB/Swiss-Prot
	RIBOSOME-RECYCLING FACTOR, MITOCHONDRIAL	UniProtKB/Swiss-Prot
Pfam	RRF	UniProtKB/Swiss-Prot
PhenoGen	Mrrf	PhenoGen
RatGTEx	ENSRNOG00000025997	RatGTEx
Superfamily-SCOP	SSF55194	UniProtKB/Swiss-Prot
UniProt	A0A8I6G9D1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LW16_RAT	UniProtKB/TrEMBL
	Q5RKI9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Mrrf	mitochondrial ribosome recycling factor	Mrrf_predicted	mitochondrial ribosome recycling factor (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Mrrf_predicted	mitochondrial ribosome recycling factor (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar