Tmem63b (transmembrane protein 63B) - Rat Genome Database

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Gene: Tmem63b (transmembrane protein 63B) Rattus norvegicus
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Symbol: Tmem63b
Name: transmembrane protein 63B
RGD ID: 1305862
Description: Predicted to enable monoatomic cation channel activity and phospholipid transporter activity. Predicted to be involved in several processes, including drinking behavior; intestinal stem cell homeostasis; and surfactant secretion. Predicted to be located in alveolar lamellar body membrane; early endosome membrane; and lysosomal membrane. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Orthologous to human TMEM63B (transmembrane protein 63B); INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CSC1-like protein 2; LOC363197; RGD1305862; similar to KIAA0792 gene product; Tmem63b-ps1; transmembrane protein 63B, pseudogene 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,810,753 - 22,838,163 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl922,811,354 - 22,838,331 (+)EnsemblGRCr8
mRatBN7.2915,313,867 - 15,340,722 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,320,432 - 15,340,720 (+)EnsemblmRatBN7.2
Rnor_6.0917,698,697 - 17,725,479 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,705,212 - 17,725,378 (+)Ensemblrn6Rnor6.0
Rnor_5.0916,587,156 - 16,613,885 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4910,912,750 - 10,938,218 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera913,059,592 - 13,084,540 (+)NCBICelera
RGSC_v3.1910,910,808 - 10,935,527 (+)NCBI
Cytogenetic Map9q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:27045885   PMID:30382938   PMID:31243992  


Genomics

Comparative Map Data
Tmem63b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,810,753 - 22,838,163 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl922,811,354 - 22,838,331 (+)EnsemblGRCr8
mRatBN7.2915,313,867 - 15,340,722 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,320,432 - 15,340,720 (+)EnsemblmRatBN7.2
Rnor_6.0917,698,697 - 17,725,479 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,705,212 - 17,725,378 (+)Ensemblrn6Rnor6.0
Rnor_5.0916,587,156 - 16,613,885 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4910,912,750 - 10,938,218 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera913,059,592 - 13,084,540 (+)NCBICelera
RGSC_v3.1910,910,808 - 10,935,527 (+)NCBI
Cytogenetic Map9q12NCBI
TMEM63B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38644,126,633 - 44,155,519 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl644,126,614 - 44,155,520 (+)Ensemblhg38GRCh38
GRCh37644,094,651 - 44,123,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36644,203,354 - 44,231,234 (+)NCBIBuild 36Build 36hg18NCBI36
Celera645,648,517 - 45,676,397 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,823,622 - 43,844,580 (+)NCBIHuRef
CHM1_1644,099,550 - 44,127,430 (+)NCBICHM1_1
T2T-CHM13v2.0643,959,874 - 43,988,974 (+)NCBIT2T-CHM13v2.0
Tmem63b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,971,102 - 45,997,212 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,971,097 - 45,997,831 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381745,660,172 - 45,686,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1745,660,171 - 45,686,905 (-)Ensemblmm10GRCm38
MGSCv371745,797,126 - 45,823,167 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361745,123,758 - 45,149,719 (-)NCBIMGSCv36mm8
Celera1749,090,654 - 49,116,656 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.59NCBI
Tmem63b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,769,352 - 9,791,136 (+)Ensembl
ChiLan1.0NW_0049554379,769,352 - 9,789,517 (+)NCBIChiLan1.0ChiLan1.0
TMEM63B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,631,914 - 58,660,577 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,502,064 - 54,530,670 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,724,259 - 43,752,309 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1645,008,187 - 45,036,764 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl645,009,276 - 45,036,764 (+)EnsemblpanPan2panpan1.1
TMEM63B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,550,096 - 12,575,508 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,550,976 - 12,632,205 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1212,576,613 - 12,601,784 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01213,032,616 - 13,057,775 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1213,033,385 - 13,057,768 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,558,236 - 12,583,435 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,645,937 - 12,671,101 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,739,927 - 12,765,068 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem63b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494648,031,372 - 48,049,835 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647615,910,459 - 15,934,169 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647615,910,186 - 15,928,570 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM63B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,138,431 - 39,165,077 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1739,137,684 - 39,165,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,954,529 - 44,981,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM63B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,009,378 - 28,039,047 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,009,118 - 28,030,855 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604444,183,496 - 44,212,464 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem63b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475415,688,248 - 15,703,105 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475415,688,304 - 15,708,227 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem63b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1484,202,464 - 84,230,053 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem63b
108 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:67
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000026728
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat

Markers in Region
RH136992  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2915,340,455 - 15,340,672 (+)MAPPERmRatBN7.2
Rnor_6.0917,725,213 - 17,725,429NCBIRnor6.0
Rnor_5.0916,613,619 - 16,613,835UniSTSRnor5.0
RGSC_v3.4910,939,102 - 10,939,318UniSTSRGSC3.4
Cytogenetic Map9q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026728   ⟹   ENSRNOP00000026728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl922,811,436 - 22,838,162 (+)Ensembl
mRatBN7.2 Ensembl915,320,432 - 15,340,720 (+)Ensembl
Rnor_6.0 Ensembl917,705,212 - 17,725,378 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096202   ⟹   ENSRNOP00000077670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl922,811,354 - 22,838,162 (+)Ensembl
mRatBN7.2 Ensembl915,320,432 - 15,340,720 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101287   ⟹   ENSRNOP00000088816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl922,811,436 - 22,838,162 (+)Ensembl
mRatBN7.2 Ensembl915,320,432 - 15,340,720 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000122446   ⟹   ENSRNOP00000111738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl922,811,436 - 22,838,331 (+)Ensembl
RefSeq Acc Id: NM_001427713   ⟹   NP_001414642
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,811,337 - 22,838,163 (+)NCBI
RefSeq Acc Id: XM_006244582   ⟹   XP_006244644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,811,312 - 22,838,163 (+)NCBI
mRatBN7.2915,313,867 - 15,340,722 (+)NCBI
Rnor_6.0917,698,722 - 17,725,479 (+)NCBI
Rnor_5.0916,587,156 - 16,613,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084824   ⟹   XP_038940752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,811,527 - 22,838,163 (+)NCBI
mRatBN7.2915,314,084 - 15,340,722 (+)NCBI
RefSeq Acc Id: XM_039084826   ⟹   XP_038940754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,811,476 - 22,838,163 (+)NCBI
mRatBN7.2915,314,026 - 15,340,722 (+)NCBI
RefSeq Acc Id: XM_063267361   ⟹   XP_063123431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,810,753 - 22,838,163 (+)NCBI
RefSeq Acc Id: XP_006244644   ⟸   XM_006244582
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZKC7 (UniProtKB/TrEMBL),   A0A8I6GGL9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026728   ⟸   ENSRNOT00000026728
RefSeq Acc Id: XP_038940754   ⟸   XM_039084826
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZKC7 (UniProtKB/TrEMBL),   A0A8I6GGL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940752   ⟸   XM_039084824
- Peptide Label: isoform X1
- UniProtKB: D4A105 (UniProtKB/TrEMBL),   A0A8I6GGL9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077670   ⟸   ENSRNOT00000096202
Ensembl Acc Id: ENSRNOP00000088816   ⟸   ENSRNOT00000101287
RefSeq Acc Id: XP_063123431   ⟸   XM_063267361
- Peptide Label: isoform X1
- UniProtKB: D4A105 (UniProtKB/TrEMBL),   A0A8I6GGL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414642   ⟸   NM_001427713
- UniProtKB: D4A105 (UniProtKB/TrEMBL),   A0A8I6GGL9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111738   ⟸   ENSRNOT00000122446
Protein Domains
CSC1/OSCA1-like 7TM region   CSC1/OSCA1-like cytosolic   CSC1/OSCA1-like N-terminal transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A105-F1-model_v2 AlphaFold D4A105 1-832 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305862 AgrOrtholog
BioCyc Gene G2FUF-28181 BioCyc
Ensembl Genes ENSRNOG00000019743 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026728 ENTREZGENE
  ENSRNOT00000026728.6 UniProtKB/TrEMBL
  ENSRNOT00000096202 ENTREZGENE
  ENSRNOT00000096202.2 UniProtKB/TrEMBL
  ENSRNOT00000101287.2 UniProtKB/TrEMBL
  ENSRNOT00000122446.1 UniProtKB/TrEMBL
InterPro Csc1-like UniProtKB/TrEMBL
  Csc1_N UniProtKB/TrEMBL
  DUF221 UniProtKB/TrEMBL
  DUF4463 UniProtKB/TrEMBL
KEGG Report rno:363197 UniProtKB/TrEMBL
NCBI Gene 363197 ENTREZGENE
PANTHER CSC1-LIKE PROTEIN 2 UniProtKB/TrEMBL
  PTHR13018 UniProtKB/TrEMBL
Pfam DUF221 UniProtKB/TrEMBL
  DUF4463 UniProtKB/TrEMBL
  RSN1_TM UniProtKB/TrEMBL
PhenoGen Tmem63b PhenoGen
RatGTEx ENSRNOG00000019743 RatGTEx
UniProt A0A8I5ZKC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GGL9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LLA6_RAT UniProtKB/TrEMBL
  D4A105 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-07 Tmem63b  transmembrane protein 63B  Tmem63b-ps1  transmembrane protein 63B, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-09 Tmem63b-ps1  transmembrane protein 63B, pseudogene 1  Tmem63b  transmembrane protein 63b  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tmem63b  transmembrane protein 63b   Tmem63b_predicted  transmembrane protein 63b (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Tmem63b_predicted  transmembrane protein 63b (predicted)  RGD1305862_predicted  similar to KIAA0792 gene product (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1305862_predicted  similar to KIAA0792 gene product (predicted)  LOC363197_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363197_predicted  similar to KIAA0792 gene product (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL