Hnrnpll (heterogeneous nuclear ribonucleoprotein L-like) - Rat Genome Database

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Gene: Hnrnpll (heterogeneous nuclear ribonucleoprotein L-like) Rattus norvegicus
Analyze
Symbol: Hnrnpll
Name: heterogeneous nuclear ribonucleoprotein L-like
RGD ID: 1305861
Description: Predicted to enable mRNA binding activity. Predicted to be involved in positive regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus and synapse. Orthologous to human HNRNPLL (heterogeneous nuclear ribonucleoprotein L like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Hnrpll; LOC313842; RGD1305861; similar to 2810036L13Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,720,013 - 20,752,803 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl620,722,184 - 20,752,802 (+)EnsemblGRCr8
mRatBN7.2614,969,953 - 15,000,574 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl614,970,057 - 14,999,745 (+)EnsemblmRatBN7.2
Rnor_6.062,698,983 - 2,729,715 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl62,699,961 - 2,729,394 (-)Ensemblrn6Rnor6.0
Rnor_5.062,677,594 - 2,710,507 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.462,909,705 - 2,940,020 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera614,642,446 - 14,673,025 (+)NCBICelera
RGSC_v3.162,908,982 - 2,986,101 (-)NCBI
Cytogenetic Map6q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)
synapse  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18669861   PMID:19946888   PMID:22658674   PMID:22681889   PMID:28131823  


Genomics

Comparative Map Data
Hnrnpll
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,720,013 - 20,752,803 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl620,722,184 - 20,752,802 (+)EnsemblGRCr8
mRatBN7.2614,969,953 - 15,000,574 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl614,970,057 - 14,999,745 (+)EnsemblmRatBN7.2
Rnor_6.062,698,983 - 2,729,715 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl62,699,961 - 2,729,394 (-)Ensemblrn6Rnor6.0
Rnor_5.062,677,594 - 2,710,507 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.462,909,705 - 2,940,020 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera614,642,446 - 14,673,025 (+)NCBICelera
RGSC_v3.162,908,982 - 2,986,101 (-)NCBI
Cytogenetic Map6q12NCBI
HNRNPLL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38238,561,969 - 38,602,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl238,561,969 - 38,603,586 (-)Ensemblhg38GRCh38
GRCh37238,789,111 - 38,830,070 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36238,644,678 - 38,683,528 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34238,702,824 - 38,741,675NCBI
Celera238,631,387 - 38,671,235 (-)NCBICelera
Cytogenetic Map2p22.1NCBI
HuRef238,530,383 - 38,570,248 (-)NCBIHuRef
CHM1_1238,720,822 - 38,760,680 (-)NCBICHM1_1
T2T-CHM13v2.0238,568,882 - 38,609,841 (-)NCBIT2T-CHM13v2.0
Hnrnpll
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391780,336,916 - 80,369,697 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1780,336,916 - 80,369,697 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381780,029,487 - 80,062,268 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1780,029,487 - 80,062,334 (-)Ensemblmm10GRCm38
MGSCv371780,428,827 - 80,461,674 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361779,937,813 - 79,970,531 (-)NCBIMGSCv36mm8
Celera1784,345,962 - 84,378,918 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1750.3NCBI
Hnrnpll
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554416,229,692 - 6,257,214 (-)Ensembl
ChiLan1.0NW_0049554416,229,692 - 6,269,051 (-)NCBIChiLan1.0ChiLan1.0
HNRNPLL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21287,877,896 - 87,920,408 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A87,878,832 - 87,924,383 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A38,585,301 - 38,629,509 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A39,345,857 - 39,389,111 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A39,345,857 - 39,389,842 (-)EnsemblpanPan2panpan1.1
HNRNPLL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11730,644,695 - 30,684,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1730,645,676 - 30,684,377 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1730,461,013 - 30,500,778 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01731,299,839 - 31,339,621 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1731,300,283 - 31,339,731 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11730,522,760 - 30,562,465 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01730,592,485 - 30,632,226 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01730,805,473 - 30,845,243 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hnrnpll
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629241,225,252 - 41,252,222 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650812,654,190 - 12,680,797 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650812,653,861 - 12,680,816 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPLL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3101,753,292 - 101,802,062 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13101,753,330 - 101,795,356 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HNRNPLL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11468,792,032 - 68,833,313 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1468,791,975 - 68,837,253 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604543,147,458 - 43,190,355 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpll
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473820,069,417 - 20,107,787 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Hnrnpll
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1713,010,521 - 13,041,335 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hnrnpll
172 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:6
Count of miRNA genes:6
Interacting mature miRNAs:6
Transcripts:ENSRNOT00000009175
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat

Markers in Region
RH128625  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2615,000,196 - 15,000,412 (-)MAPPERmRatBN7.2
Rnor_6.062,699,145 - 2,699,360NCBIRnor6.0
Rnor_5.062,677,756 - 2,677,971UniSTSRnor5.0
RGSC_v3.462,909,165 - 2,909,380UniSTSRGSC3.4
Celera614,672,648 - 14,672,863UniSTS
Cytogenetic Map6q11UniSTS
RH144002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,967,813 - 14,967,920 (-)MAPPERmRatBN7.2
Rnor_6.062,731,759 - 2,731,865NCBIRnor6.0
Rnor_5.062,710,370 - 2,710,476UniSTSRnor5.0
RGSC_v3.462,942,181 - 2,942,287UniSTSRGSC3.4
Celera614,640,295 - 14,640,401UniSTS
RH 3.4 Map663.6UniSTS
Cytogenetic Map6q11UniSTS
RH140319  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,926,512 - 14,926,647 (-)MAPPERmRatBN7.2
Rnor_6.062,772,124 - 2,772,258NCBIRnor6.0
Rnor_5.062,750,470 - 2,750,604UniSTSRnor5.0
RGSC_v3.462,986,322 - 2,986,456UniSTSRGSC3.4
Celera614,601,072 - 14,601,206UniSTS
RH 3.4 Map663.3UniSTS
Cytogenetic Map6q11UniSTS
RH136073  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,999,731 - 14,999,926 (-)MAPPERmRatBN7.2
Rnor_6.062,699,631 - 2,699,825NCBIRnor6.0
Rnor_5.062,678,242 - 2,678,436UniSTSRnor5.0
RGSC_v3.462,909,651 - 2,909,845UniSTSRGSC3.4
Celera614,672,183 - 14,672,377UniSTS
Cytogenetic Map6q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009175   ⟹   ENSRNOP00000009175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,722,184 - 20,751,972 (+)Ensembl
mRatBN7.2 Ensembl614,970,057 - 14,999,745 (+)Ensembl
Rnor_6.0 Ensembl62,699,961 - 2,729,394 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130724   ⟹   ENSRNOP00000100558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,722,318 - 20,752,802 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145980   ⟹   ENSRNOP00000112228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,722,186 - 20,752,802 (+)Ensembl
RefSeq Acc Id: XM_039113073   ⟹   XP_038969001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,720,013 - 20,752,803 (+)NCBI
mRatBN7.2614,969,953 - 14,999,747 (+)NCBI
RefSeq Acc Id: XM_233805   ⟹   XP_233805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,720,013 - 20,752,803 (+)NCBI
mRatBN7.2614,969,954 - 15,000,574 (+)NCBI
Rnor_6.062,698,983 - 2,729,715 (-)NCBI
Rnor_5.062,677,594 - 2,710,507 (-)NCBI
RGSC_v3.462,909,705 - 2,940,020 (-)RGD
Sequence:
RefSeq Acc Id: XR_005505709
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,720,013 - 20,743,522 (+)NCBI
mRatBN7.2614,969,954 - 14,991,297 (+)NCBI
RefSeq Acc Id: XP_233805   ⟸   XM_233805
- Peptide Label: isoform X1
- UniProtKB: D4A3E1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009175   ⟸   ENSRNOT00000009175
RefSeq Acc Id: XP_038969001   ⟸   XM_039113073
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000112228   ⟸   ENSRNOT00000145980
Ensembl Acc Id: ENSRNOP00000100558   ⟸   ENSRNOT00000130724

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3E1-F1-model_v2 AlphaFold D4A3E1 1-591 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305861 AgrOrtholog
BioCyc Gene G2FUF-38517 BioCyc
Ensembl Genes ENSRNOG00000006929 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009175 ENTREZGENE
  ENSRNOT00000009175.8 UniProtKB/TrEMBL
  ENSRNOT00000130724.1 UniProtKB/TrEMBL
  ENSRNOT00000145980 ENTREZGENE
  ENSRNOT00000145980.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro HnRNP-L_PTB UniProtKB/TrEMBL
  hnRPLL_RRM1 UniProtKB/TrEMBL
  hnRPLL_RRM2 UniProtKB/TrEMBL
  hnRPLL_RRM3 UniProtKB/TrEMBL
  hnRPLL_RRM4 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PTBP1_RRM UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
NCBI Gene 313842 ENTREZGENE
PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
  RRM_5 UniProtKB/TrEMBL
  RRM_8 UniProtKB/TrEMBL
PhenoGen Hnrnpll PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006929 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0ABK0LCN4_RAT UniProtKB/TrEMBL
  A0ABK0M262_RAT UniProtKB/TrEMBL
  D4A3E1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 Hnrnpll  heterogeneous nuclear ribonucleoprotein L-like  Hnrpll  heterogeneous nuclear ribonucleoprotein L-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Hnrpll  heterogeneous nuclear ribonucleoprotein L-like   Hnrpll_predicted  heterogeneous nuclear ribonucleoprotein L-like (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Hnrpll_predicted  heterogeneous nuclear ribonucleoprotein L-like (predicted)  RGD1305861_predicted  similar to 2810036L13Rik protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1305861_predicted  similar to 2810036L13Rik protein (predicted)  LOC313842_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC313842_predicted  similar to 2810036L13Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL