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Gene: Spopl (speckle type BTB/POZ protein like) Rattus norvegicus

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Symbol:

Spopl

Name:

speckle type BTB/POZ protein like

RGD ID:

1305847

Description:

Predicted to enable identical protein binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of protein ubiquitination; proteasome-mediated ubiquitin-dependent protein catabolic process; and regulation of proteolysis. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPOPL (speckle type BTB/POZ protein like); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC296532; RGD1305847; similar to speckle-type POZ protein; speckle-type POZ protein-like; speckle-type POZ protein-like A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPOPL (speckle type BTB/POZ protein like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Spopl (speckle-type BTB/POZ protein-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spopl (speckle type BTB/POZ protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPOPL (speckle type BTB/POZ protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPOPL (speckle type BTB/POZ protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spopl (speckle type BTB/POZ protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPOPL (speckle type BTB/POZ protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPOPL (speckle type BTB/POZ protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spopl (speckle type BTB/POZ protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FGD3 (FYVE, RhoGEF and PH domain containing 3)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Spopl (speckle-type BTB/POZ protein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SPOPL (speckle type BTB/POZ protein like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spopla (speckle-type POZ protein-like a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spoplb (speckle-type POZ protein-like b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spoplb (speckle-type POZ protein-like b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bath-43	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	rdx	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	spopl	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	26,478,535 - 26,552,344 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	26,482,163 - 26,512,634 (-)	Ensembl				GRCr8
mRatBN7.2	3	6,074,681 - 6,148,508 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	6,078,310 - 6,108,794 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	9,178,010 - 9,238,205 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	17,764,209 - 17,824,402 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	15,954,015 - 16,014,210 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	397,834 - 471,651 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	401,429 - 471,634 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	396,611 - 456,801 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	1,518,951 - 1,579,141 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	917,060 - 977,065 (-)	NCBI		Celera
RGSC_v3.1	3	1,518,250 - 1,549,357 (-)	NCBI
Cytogenetic Map	3	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

amitrole (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper(II) sulfate (ISO)

deguelin (ISO)

Dibutyl phosphate (ISO)

fulvestrant (ISO)

GSK-J4 (ISO)

leflunomide (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

paracetamol (ISO)

phenobarbital (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

thiram (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of protein ubiquitination (IEA,ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (IBA,IEA,ISO)

regulation of proteolysis (IBA)

Cellular Component

Cul3-RING ubiquitin ligase complex (IEA,ISO)

cytoplasm (IBA)

nucleus (IBA,IEA)

Molecular Function

identical protein binding (IEA,ISO)

protein binding (ISO)

ubiquitin protein ligase binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:22632832

Genomics

Comparative Map Data

Spopl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	26,478,535 - 26,552,344 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	26,482,163 - 26,512,634 (-)	Ensembl				GRCr8
mRatBN7.2	3	6,074,681 - 6,148,508 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	6,078,310 - 6,108,794 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	9,178,010 - 9,238,205 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	17,764,209 - 17,824,402 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	15,954,015 - 16,014,210 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	397,834 - 471,651 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	401,429 - 471,634 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	396,611 - 456,801 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	1,518,951 - 1,579,141 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	917,060 - 977,065 (-)	NCBI		Celera
RGSC_v3.1	3	1,518,250 - 1,549,357 (-)	NCBI
Cytogenetic Map	3	p13	NCBI

SPOPL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	138,501,770 - 138,573,547 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	138,501,770 - 138,574,458 (+)	Ensembl			hg38	GRCh38
GRCh37	2	139,259,340 - 139,331,117 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	138,975,841 - 139,047,271 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	132,970,983 - 133,042,402 (+)	NCBI		Celera
Cytogenetic Map	2	q22.1	NCBI
HuRef	2	131,250,702 - 131,322,126 (+)	NCBI		HuRef
CHM1_1	2	139,263,966 - 139,335,423 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	138,947,462 - 139,019,229 (+)	NCBI		T2T-CHM13v2.0

Spopl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	23,382,942 - 23,462,139 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	23,396,232 - 23,462,118 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	23,507,466 - 23,572,132 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	23,506,220 - 23,572,106 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	23,365,574 - 23,427,624 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	23,332,063 - 23,394,063 (-)	NCBI		MGSCv36	mm8
Celera	2	23,242,836 - 23,304,878 (-)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	15.48	NCBI

Spopl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	5,568,073 - 5,612,677 (+)	Ensembl
ChiLan1.0	NW_004955440	5,594,970 - 5,612,677 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPOPL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	36,351,382 - 36,422,774 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	36,366,348 - 36,437,740 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	21,280,143 - 21,351,547 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	142,577,019 - 142,648,257 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	142,577,019 - 142,648,257 (+)	Ensembl			panPan2	panpan1.1

SPOPL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	41,167,511 - 41,240,741 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	41,215,826 - 41,236,735 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	41,421,068 - 41,494,005 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	42,603,649 - 42,676,830 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	42,608,284 - 42,674,020 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	41,272,145 - 41,338,798 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	41,415,046 - 41,488,065 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	42,646,187 - 42,713,252 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spopl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	103,952,007 - 104,013,819 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	37,603,803 - 37,661,436 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	37,608,044 - 37,661,337 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPOPL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	13,134,225 - 13,207,731 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	13,134,221 - 13,207,737 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	15,277,896 - 15,351,897 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPOPL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	23,868,104 - 23,934,157 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	175,444,328 - 175,510,428 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spopl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	38,277,686 - 38,293,970 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	38,214,876 - 38,297,363 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Spopl
1009 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	113
Count of miRNA genes:	95
Interacting mature miRNAs:	101
Transcripts:	ENSRNOT00000033653
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC167106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033653 ⟹ ENSRNOP00000035106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	26,482,163 - 26,512,634 (-)	Ensembl
mRatBN7.2 Ensembl	3	6,078,310 - 6,108,794 (-)	Ensembl
Rnor_6.0 Ensembl	3	401,462 - 431,933 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081816 ⟹ ENSRNOP00000075640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	26,482,163 - 26,512,634 (-)	Ensembl
mRatBN7.2 Ensembl	3	6,078,310 - 6,108,794 (-)	Ensembl
Rnor_6.0 Ensembl	3	401,429 - 471,634 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095228 ⟹ ENSRNOP00000077719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	6,078,476 - 6,108,794 (-)	Ensembl

RefSeq Acc Id:

NM_001134447 ⟹ NP_001127919

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	26,482,162 - 26,542,352 (-)	NCBI
mRatBN7.2	3	6,078,309 - 6,138,513 (-)	NCBI
Rnor_6.0	3	401,461 - 461,651 (-)	NCBI
Rnor_5.0	3	396,611 - 456,801 (-)	NCBI
RGSC_v3.4	3	1,518,951 - 1,579,141 (-)	RGD
Celera	3	917,060 - 977,065 (-)	RGD

Sequence:

show sequence

AACAGATGTGCTGGCAAGGAAATATAAGCAGGCAAAGAAGAGTGAATCTTCCTTTTTCCAATGT
CCTTATGGAGGTGTCCACCAGAAGATGTGCCCCAGATTAAAGTTAAATTATTCAAGTTTGTGGC
ATACTATATGAATCTTACGACTGTCATAAGGTGGCAATGTCTCGGGAACCTACCCCTCCTCTGC
CTGGAGATATGTCTACTAGTCCTGTTGCGGAAAGCTGGTGCTACACACAGGTTAAAGTAGTGAA
ATTTTCCTACATGTGGACTATTAATAACTTCAGTTTTTGTCGAGAAGAAATGGGTGAAGTGTTA
AAGAGTTCAACATTTTCTTCTGGCCCAAATGATAAAATGAAATGGTGCCTGAGGGTAAACCCAA
AAGGCCTAGATGAGGAAAGTAGAGACTACTTGTCCTTGTATTTGCTTCTGGTCAGCTGCCCGAA
GAGTGAGGTTCGAGCTAAATTCAAATTTTCTCTTCTGAATGCTAAAAGGGAAGAAACAAAAGCA
ATGGAAAGCCAAAGAGCATATCGATTTGTACAGGGGAAGGATTGGGGATTTAAAAAATTCATTA
GAAGGGATTTTTTGCTTGACGAAGCTAATGGTCTCCTTCCAGATGACAAGCTTACGTTATTCTG
TGAGGTGAGTGTGGTCCAAGATTCAGTAAATGTATCAGGACATACTAATACAAACACTTTGAAG
GTGCCAGAATGTCGGCTAGCAGAAGACTTAGGGAATCTTTGGGAAAACACAAGATTTACAGATT
GCTGCTTTTTTGTGAGAGGAAAAGAATTCAAAGCTCATAAGTCAGTGCTTGCAGCTCGATCCCC
AGTTTTTAATGCAATGTTTGAACATGAAATGGAAGAATGCACAAAGAATCGAGTGGAAATAAAT
GATTTAGACCCTGAGGTTTTTAAAGAAATGATGAGATTCGTTTACACAGGAAAGGCACCAAATC
TTGATAAAATGGCTGACAACTTGTTGGCAGCTGCAGATAAATATGCACTGGAACGGCTGAAGGT
CATGTGTGAAGAAGCTTTGTGTAGTAACCTCTCAGTAGAAAATGTTGCTGATACCCTTGTCCTT
GCAGATTTGCACAGTGCAGAACAGTTGAAAGCCCAGGCAATAGACTTTATTAATAGGTGCAGTG
TTCTTCGACAACTTGGGTGTAAGGATGGGAAAAACTGGAACAACAACCAAGCAACTGACATAAT
GGAAACATCAGGGTGGAAGTCCATGATTCAGTCTCGTCCTCATTTAGTGGCAGAAGCCTTCCGA
GCACTTGCTTCTTCACAGTGTCCACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAG
TCTTCCACAGACAATAGAAAGGTCCCGAAGGACTCCAATACAAACCATAAGCAGCAGTTGTTTC
TGTCTCTTGTCCACAGAGCAGGAGCTGGAAAAGCATATTGCTTGCTTTCACGTGGATAATTTAT
GGTTTATACTTCAGCTTTAAATCTGACTAATTAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017591625 ⟹ XP_017447114

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	26,478,535 - 26,552,344 (-)	NCBI
mRatBN7.2	3	6,074,681 - 6,148,506 (-)	NCBI
Rnor_6.0	3	397,834 - 471,648 (-)	NCBI

Sequence:

show sequence

AGCTCCTTGGCGCACGCGCGACTGGAGGGGCGGAAACTGGACGCCACAGCCTCAGGAGTTGGAG
GGGGTTCAGGCTAGGAGCACTCTTTCGCGCCCGGTTTGTTTACTGTGGGGAAGAAGTTTAGCAT
CCGGTGAGAACAAGGAGGGAGGCCAGGAGGAGGATGCAGCTTGGCCGGGGCGCCCGCTGCAGGA
GCTCGCCGCCGCCTCAGCCTCGGCCCCCGGGGCCTCCGAGGGTCCGCCCGCCGCCCCTCGTGTC
CGGTTAAATTATTCAAGTTTGTGGCATACTATATGAATCTTACGACTGTCATAAGGTGGCAATG
TCTCGGGAACCTACCCCTCCTCTGCCTGGAGATATGTCTACTAGTCCTGTTGCGGAAAGCTGGT
GCTACACACAGGTTAAAGTAGTGAAATTTTCCTACATGTGGACTATTAATAACTTCAGTTTTTG
TCGAGAAGAAATGGGTGAAGTGTTAAAGAGTTCAACATTTTCTTCTGGCCCAAATGATAAAATG
AAATGGTGCCTGAGGGTAAACCCAAAAGGCCTAGATGAGGAAAGTAGAGACTACTTGTCCTTGT
ATTTGCTTCTGGTCAGCTGCCCGAAGAGTGAGGTTCGAGCTAAATTCAAATTTTCTCTTCTGAA
TGCTAAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTACAGGGGAAG
GATTGGGGATTTAAAAAATTCATTAGAAGGGATTTTTTGCTTGACGAAGCTAATGGTCTCCTTC
CAGATGACAAGCTTACGTTATTCTGTGAGCATCTCCAACACTGCTTGCAGAAGAGGTGGAAGCA
TTGCACTGCCCTCCCTAAAGAACTGGCACCTCCCCTCCACTGCAAGTGGTGCTGTAGACAGGTG
AGTGTGGTCCAAGATTCAGTAAATGTATCAGGACATACTAATACAAACACTTTGAAGGTGCCAG
AATGTCGGCTAGCAGAAGACTTAGGGAATCTTTGGGAAAACACAAGATTTACAGATTGCTGCTT
TTTTGTGAGAGGAAAAGAATTCAAAGCTCATAAGTCAGTGCTTGCAGCTCGATCCCCAGTTTTT
AATGCAATGTTTGAACATGAAATGGAAGAATGCACAAAGAATCGAGTGGAAATAAATGATTTAG
ACCCTGAGGTTTTTAAAGAAATGATGAGATTCGTTTACACAGGAAAGGCACCAAATCTTGATAA
AATGGCTGACAACTTGTTGGCAGCTGCAGATAAATATGCACTGGAACGGCTGAAGGTCATGTGT
GAAGAAGCTTTGTGTAGTAACCTCTCAGTAGAAAATGTTGCTGATACCCTTGTCCTTGCAGATT
TGCACAGTGCAGAACAGTTGAAAGCCCAGGCAATAGACTTTATTAATAGGTGCAGTGTTCTTCG
ACAACTTGGGTGTAAGGATGGGAAAAACTGGAACAACAACCAAGCAACTGACATAATGGAAACA
TCAGGGTGGAAGTCCATGATTCAGTCTCGTCCTCATTTAGTGGCAGAAGCCTTCCGAGCACTTG
CTTCTTCACAGTGTCCACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTCCA
CAGACAATAGAAAGGTCCCGAAGGACTCCAATACAAACCATAAGCAGCAGTTGTTTCTGTCTCT
TGTCCACAGAGCAGGAGCTGGAAAAGCATATTGCTTGCTTTCACGTGGATAATTTATGGTTTAT
ACTTCAGCTTTAAATCTGACTAATTAATTCACTTCAAGGCCTTAAATTGTCTTCAGTGACTTCT
CTTGTTCATATAATAGTTTTGTTTTGTTTTGTTATTGTGCCTTGTCAGTTTGCCAAGGCCATGC
AGGATTGCACTAGCTCCACAATGCAGTAATATTGATAACTGATAATACTGGGTTTCAAAGGATC
TTCCATTATTTTAAAAACAAAAGATTTTATAGGTTTTGTTCTATGTGATCTCCAAGTATCAAAC
TAGGTTCTTTTGGATTTGGAGATTGCCAGAGGCACCTCCAGTCTCAGTTGTGTAGACACTAAAG
AGCCTGTTACCATCTAGGTAAATGATGGCCATACACTGCTCTGTTTTTTTTTTTTTTTTTTTTT
CATTTCAAGGGACAGGTAATGAGTTGATCTAAAGTTTTAGTAATATTTGTAGTGTTTGTCTATA
TATTAACTGCTCAAGAAACTGGGTTTATGCACATTTGTAAAGATTGAAAAATAATGTTAAGATT
TCGATAAAAAGAAAGCATGGCTTTTGTTAATATTTTAAATTTATAATGACTTTCATTTGAAAGA
AAAATTCAATAGGCGTGTAAGTCAGGATGACCAATGTACATGTAATGAGCGGGCCAATTAAGAA
AGGTATATTTGCACTTTTAATGTGGAAGTTTTCTATGATGAATGGCACATATATTTTTTTTAGG
TGGATTAATAAGATTTTAATTATGTTTCAACATTTAAAAGAAGTTTTTATGACATATGGAGCCC
AACTTGGATATTCATGATAATAGATAAAATTATGCTTGATTGGATTTCAAATTATTATTATTTG
AGTTTATTTTAGCTTTATCACATTTGGGGAAGGCACCTAACAGTAAATGAGCCCCATATAGTCT
GCTTCTTTTCAAAGGAATTAACAGATACTTGCTTGTGCACGCTGTGTGGGGAAGCAGAGTGAGT
ATGTGCAACCGCACTAGGAATCTTTTCTCCTCGGTGGCTCAGTTGCTAACATGGCAGATTATTG
AAATTTTGCATAATGTCAACAGCATAAATGTTTCCTGTTAACTGTTTTAAGTGAACCAGTTTTT
TATTGTTATTAAAGTTTAGCTTTAAACACAAAAATGTTTTAGTAGTTGGGAGATCTGTTGTGAT
GCATTGTTCTAGAGAAGCAGGAGTGGTCAGTGTCAGATCACTGATGATATGCTTTCTACATAAA
GATAGAGCATGTTACTGGAAAAACAGGTGTATGTACCTGTATTTTGCATATATAGCTTATTCCC
TGTATTAAATTTTACATGCTTTTTTTATTTAGTTATAAAATTCAGGAAAAAAGCATAATGTTTT
AAAATAGACTATTTTTAACTATAGCTTTTTAGCTGTTAACTAAAGCAATCTTAAAATACATTGA
GAAAATACTGTCAAATCATTAGTTATCAAGAGAAAACAAAGATTGTAGTTTTAGATATTTTAGT
TTTGATTCTTTGTTGTGTTAAAATGGTAAGATTATTTGGGATAGAGGAAAAATTTTCAAGTGAC
AGTGGGCTTTACCCTATAAAAGAATCATGATGAGCAAAAATTTATTCCCTTAATTTCATCATAA
AACAAGTCCTGTTACATTAACAGCGCAAACTTCTAAACACATATATACACACTTTTAATACAAG
ATATTTTCATGGTCTGGCAAAAAGCAAAGATTCCCCTCAGCTGGTGGAATACATTGTCACATAT
CATAAAAACACTGTACATATGTACAACGTATGTAAATTGATTCATTGATTTGGTCTATATTTCT
AACCATGGTGAAATCAGTAGTAATGCCATATAATAAACATTGTAAATGTTGATTGATAATGTTC
AGGATTTTCTTATACAGGCTTTTGGTTTTACTTTGCTAACATATTTTCTACCAAAAAAATTCAA
CACTGTGCTCTATAAATACCAGTGTTTGCTGAAATGCCCACATTTTAGATGGTACATACACTCA
CAGAATCATACAATCTTTTCTCTCTCTCTTTTTTTAATGTGTATTTTAGTAGTTTTGGTTCTTG
AGTGTGTGGTAAAAGGCTGTTTGCATTTTCCTCATTCACTCATTTTTAAACTATCTATATAAAT
ACAACTTGGGTATGATTTTTGCTTAATGCAGTCTTTGTGCTTTAAGTTACCAGTTTGCTCCTCT
TACCTTCTAGTCACCTAAACAAGACTTTTCTCAGAACACAATGACTGGTTTTAAATATTACAAT
TTAAAAATGTATCTATTAGAAAACTGTTCTTTAGAGTAAGATTTAGAAATACGGTATTTGTGCC
TTTTTCATTGTTTTTCTTTTAATGTGTTTTGATATTTGGAGCACAAATATAAAGGTGCCATAAG
ATGGCTTGCTCATGTTACCTCCTTAAATTTTTCTATGTTACTATCTTCAAATAATAATTGGAGA
ACCTTGAACGAAATGTGGTTCTTTATGTGAGATATGTATGTGTTTGTATTTTCTTAAGCTGTGT
GAAATATGTTTAAGAGTGAATTTATGAAAATAGAACTTGGTTAAATATGCGTGTGCTTTATTTA
AAAAGACAGTAGATTGCCAGAAGACAGTGTAATCCTCAAAAATGTGACCAGCATTCTACATTAT
AAAATAGGAAAATAGTGCTATTTTACATTATCAAGAATAATTAAATTTTAAAAATAGTTGCTTT
AAATATTTTAAAGTGTCATGAACATTATTATTTTATTTTTTAACTCGATCGAATTGAGAGTTTA
AATTTTCAGAAATATTAATTTGTTCATTTAAAGCTTTATTCATGAATTTTAAGTTGTTATGTGA
AATTATAGATAAGGGCCTCAAGTATGGCTCAGTGATAGATAGTGTGTTTATGAATATTTGTGAT
CCATGTGTTGGATCCATAGCAATACCAACAAACAAAAAGATGGGATCGTAGATATGATTCATTT
AGAAAACAGAAGCAAAGACTTGGGTAAGTTTTATGAAAATCTAACGCAGCAGTTTTACTACAAG
TCACATGTTCATGAAGAGGTGAAGTAATCTCTTTTGGTCATGTCTGGTCTTTGATGGTTACAAT
GGAAATATTTGTTGTGTTCTTTAGAGAGGTGAGTGGATGAGTGAGTGGGTTTCAGTGTTCCCAG
AAAATAAATACAGCACTTTCAGCACGTATGAGAGTATTTTACAAAGCTTTTTATGTAGAGAATG
TGAGCTCCAACTTAAGTGTTCATGGAATGATGTAAGTGTTGGCTATGTCAATCTGAAATAATAC
TGAGTGCCTCCAATGTAAGACTTCTTTACTAGGAATGAAATCATACTGTATCTTCTGTTGTTGT
ATGTAAGTTTATATCTGAGAAGTAATACTTATTTTTAAATATTTTGTTAGTAAAGCTTATTATA
TACTGTAATCTAACTAGTAATTTAGCATTGCTTACAAATGAATTGAGCCCACTTTTTTGAAAAT
AAAGTTCTGCTAAAATTATTTAAGTTCAGAAGGAAGTTGACTTTTAAAACTCAGACCTTTAACA
TTTAATCTTTCTGGCCTTTATTTAATCCATTTGATGTTTTATGATGAGATACACACTATTTGTG
TTATTGTTGGAAATAGATTGTGTGTTTCAGCACGTTGAGTTAAAATAAAATTGTTACTACTTAT
TTAGAATTAA

hide sequence

RefSeq Acc Id:

XM_017591626 ⟹ XP_017447115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	26,478,535 - 26,519,039 (-)	NCBI
mRatBN7.2	3	6,074,681 - 6,114,932 (-)	NCBI
Rnor_6.0	3	397,834 - 432,774 (-)	NCBI

Sequence:

show sequence

TTATAGCTTTAGAAAAAAAATTTTTAATTGAAAAATTTTGTCTATCAGATTTATGTGGTTTCCT
TGATCAGTTTTTAAATCAAAAGTAGGTTCTCATTGTTCTTACAAAGTCTAGTATATTCAACAGA
ATCAAGGATGACAATAGGGTGGAAGGTGAGAACTGAAGAGAAGGACATAGTCCAATAATGAAAA
CTATTGCTATAGTGTATTGATGGTTTCCCATGTAACTGCAACCTCCTAATTTTCATAGAGATTT
CAAAAGTACACTTTGGAGAAGAGAGAGCATCTCAAACAAATGCTGTTCACAACATCTAGATAGG
TTACTAATTATACATCCAAAATGATTTGGAACAGGAATAGATAACTAGAAGGGAAATCAATCAC
TTAGTACATCTGCGAAGGAAGCACTGTGTCACAGATAATAGTCTTGGGACAGAGCAGTAGTCTG
AGTTATTTATAGGCTTTTGTAGACATCTGTGTTCTTTGGTGAGAACTAGGATCTGGCAAGTGGC
GACACGGAGTTACAGTGGGAACTTGCTTATGGCTCTTTGCACTTCAAGAAATGATCGCAGAAGT
TAAATTATTCAAGTTTGTGGCATACTATATGAATCTTACGACTGTCATAAGGTGGCAATGTCTC
GGGAACCTACCCCTCCTCTGCCTGGAGATATGTCTACTAGTCCTGTTGCGGAAAGCTGGTGCTA
CACACAGGTTAAAGTAGTGAAATTTTCCTACATGTGGACTATTAATAACTTCAGTTTTTGTCGA
GAAGAAATGGGTGAAGTGTTAAAGAGTTCAACATTTTCTTCTGGCCCAAATGATAAAATGAAAT
GGTGCCTGAGGGTAAACCCAAAAGGCCTAGATGAGGAAAGTAGAGACTACTTGTCCTTGTATTT
GCTTCTGGTCAGCTGCCCGAAGAGTGAGGTTCGAGCTAAATTCAAATTTTCTCTTCTGAATGCT
AAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTACAGGGGAAGGATT
GGGGATTTAAAAAATTCATTAGAAGGGATTTTTTGCTTGACGAAGCTAATGGTCTCCTTCCAGA
TGACAAGCTTACGTTATTCTGTGAGCATCTCCAACACTGCTTGCAGAAGAGGTGGAAGCATTGC
ACTGCCCTCCCTAAAGAACTGGCACCTCCCCTCCACTGCAAGTGGTGCTGTAGACAGGTGAGTG
TGGTCCAAGATTCAGTAAATGTATCAGGACATACTAATACAAACACTTTGAAGGTGCCAGAATG
TCGGCTAGCAGAAGACTTAGGGAATCTTTGGGAAAACACAAGATTTACAGATTGCTGCTTTTTT
GTGAGAGGAAAAGAATTCAAAGCTCATAAGTCAGTGCTTGCAGCTCGATCCCCAGTTTTTAATG
CAATGTTTGAACATGAAATGGAAGAATGCACAAAGAATCGAGTGGAAATAAATGATTTAGACCC
TGAGGTTTTTAAAGAAATGATGAGATTCGTTTACACAGGAAAGGCACCAAATCTTGATAAAATG
GCTGACAACTTGTTGGCAGCTGCAGATAAATATGCACTGGAACGGCTGAAGGTCATGTGTGAAG
AAGCTTTGTGTAGTAACCTCTCAGTAGAAAATGTTGCTGATACCCTTGTCCTTGCAGATTTGCA
CAGTGCAGAACAGTTGAAAGCCCAGGCAATAGACTTTATTAATAGGTGCAGTGTTCTTCGACAA
CTTGGGTGTAAGGATGGGAAAAACTGGAACAACAACCAAGCAACTGACATAATGGAAACATCAG
GGTGGAAGTCCATGATTCAGTCTCGTCCTCATTTAGTGGCAGAAGCCTTCCGAGCACTTGCTTC
TTCACAGTGTCCACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTCCACAGA
CAATAGAAAGGTCCCGAAGGACTCCAATACAAACCATAAGCAGCAGTTGTTTCTGTCTCTTGTC
CACAGAGCAGGAGCTGGAAAAGCATATTGCTTGCTTTCACGTGGATAATTTATGGTTTATACTT
CAGCTTTAAATCTGACTAATTAATTCACTTCAAGGCCTTAAATTGTCTTCAGTGACTTCTCTTG
TTCATATAATAGTTTTGTTTTGTTTTGTTATTGTGCCTTGTCAGTTTGCCAAGGCCATGCAGGA
TTGCACTAGCTCCACAATGCAGTAATATTGATAACTGATAATACTGGGTTTCAAAGGATCTTCC
ATTATTTTAAAAACAAAAGATTTTATAGGTTTTGTTCTATGTGATCTCCAAGTATCAAACTAGG
TTCTTTTGGATTTGGAGATTGCCAGAGGCACCTCCAGTCTCAGTTGTGTAGACACTAAAGAGCC
TGTTACCATCTAGGTAAATGATGGCCATACACTGCTCTGTTTTTTTTTTTTTTTTTTTTTCATT
TCAAGGGACAGGTAATGAGTTGATCTAAAGTTTTAGTAATATTTGTAGTGTTTGTCTATATATT
AACTGCTCAAGAAACTGGGTTTATGCACATTTGTAAAGATTGAAAAATAATGTTAAGATTTCGA
TAAAAAGAAAGCATGGCTTTTGTTAATATTTTAAATTTATAATGACTTTCATTTGAAAGAAAAA
TTCAATAGGCGTGTAAGTCAGGATGACCAATGTACATGTAATGAGCGGGCCAATTAAGAAAGGT
ATATTTGCACTTTTAATGTGGAAGTTTTCTATGATGAATGGCACATATATTTTTTTTAGGTGGA
TTAATAAGATTTTAATTATGTTTCAACATTTAAAAGAAGTTTTTATGACATATGGAGCCCAACT
TGGATATTCATGATAATAGATAAAATTATGCTTGATTGGATTTCAAATTATTATTATTTGAGTT
TATTTTAGCTTTATCACATTTGGGGAAGGCACCTAACAGTAAATGAGCCCCATATAGTCTGCTT
CTTTTCAAAGGAATTAACAGATACTTGCTTGTGCACGCTGTGTGGGGAAGCAGAGTGAGTATGT
GCAACCGCACTAGGAATCTTTTCTCCTCGGTGGCTCAGTTGCTAACATGGCAGATTATTGAAAT
TTTGCATAATGTCAACAGCATAAATGTTTCCTGTTAACTGTTTTAAGTGAACCAGTTTTTTATT
GTTATTAAAGTTTAGCTTTAAACACAAAAATGTTTTAGTAGTTGGGAGATCTGTTGTGATGCAT
TGTTCTAGAGAAGCAGGAGTGGTCAGTGTCAGATCACTGATGATATGCTTTCTACATAAAGATA
GAGCATGTTACTGGAAAAACAGGTGTATGTACCTGTATTTTGCATATATAGCTTATTCCCTGTA
TTAAATTTTACATGCTTTTTTTATTTAGTTATAAAATTCAGGAAAAAAGCATAATGTTTTAAAA
TAGACTATTTTTAACTATAGCTTTTTAGCTGTTAACTAAAGCAATCTTAAAATACATTGAGAAA
ATACTGTCAAATCATTAGTTATCAAGAGAAAACAAAGATTGTAGTTTTAGATATTTTAGTTTTG
ATTCTTTGTTGTGTTAAAATGGTAAGATTATTTGGGATAGAGGAAAAATTTTCAAGTGACAGTG
GGCTTTACCCTATAAAAGAATCATGATGAGCAAAAATTTATTCCCTTAATTTCATCATAAAACA
AGTCCTGTTACATTAACAGCGCAAACTTCTAAACACATATATACACACTTTTAATACAAGATAT
TTTCATGGTCTGGCAAAAAGCAAAGATTCCCCTCAGCTGGTGGAATACATTGTCACATATCATA
AAAACACTGTACATATGTACAACGTATGTAAATTGATTCATTGATTTGGTCTATATTTCTAACC
ATGGTGAAATCAGTAGTAATGCCATATAATAAACATTGTAAATGTTGATTGATAATGTTCAGGA
TTTTCTTATACAGGCTTTTGGTTTTACTTTGCTAACATATTTTCTACCAAAAAAATTCAACACT
GTGCTCTATAAATACCAGTGTTTGCTGAAATGCCCACATTTTAGATGGTACATACACTCACAGA
ATCATACAATCTTTTCTCTCTCTCTTTTTTTAATGTGTATTTTAGTAGTTTTGGTTCTTGAGTG
TGTGGTAAAAGGCTGTTTGCATTTTCCTCATTCACTCATTTTTAAACTATCTATATAAATACAA
CTTGGGTATGATTTTTGCTTAATGCAGTCTTTGTGCTTTAAGTTACCAGTTTGCTCCTCTTACC
TTCTAGTCACCTAAACAAGACTTTTCTCAGAACACAATGACTGGTTTTAAATATTACAATTTAA
AAATGTATCTATTAGAAAACTGTTCTTTAGAGTAAGATTTAGAAATACGGTATTTGTGCCTTTT
TCATTGTTTTTCTTTTAATGTGTTTTGATATTTGGAGCACAAATATAAAGGTGCCATAAGATGG
CTTGCTCATGTTACCTCCTTAAATTTTTCTATGTTACTATCTTCAAATAATAATTGGAGAACCT
TGAACGAAATGTGGTTCTTTATGTGAGATATGTATGTGTTTGTATTTTCTTAAGCTGTGTGAAA
TATGTTTAAGAGTGAATTTATGAAAATAGAACTTGGTTAAATATGCGTGTGCTTTATTTAAAAA
GACAGTAGATTGCCAGAAGACAGTGTAATCCTCAAAAATGTGACCAGCATTCTACATTATAAAA
TAGGAAAATAGTGCTATTTTACATTATCAAGAATAATTAAATTTTAAAAATAGTTGCTTTAAAT
ATTTTAAAGTGTCATGAACATTATTATTTTATTTTTTAACTCGATCGAATTGAGAGTTTAAATT
TTCAGAAATATTAATTTGTTCATTTAAAGCTTTATTCATGAATTTTAAGTTGTTATGTGAAATT
ATAGATAAGGGCCTCAAGTATGGCTCAGTGATAGATAGTGTGTTTATGAATATTTGTGATCCAT
GTGTTGGATCCATAGCAATACCAACAAACAAAAAGATGGGATCGTAGATATGATTCATTTAGAA
AACAGAAGCAAAGACTTGGGTAAGTTTTATGAAAATCTAACGCAGCAGTTTTACTACAAGTCAC
ATGTTCATGAAGAGGTGAAGTAATCTCTTTTGGTCATGTCTGGTCTTTGATGGTTACAATGGAA
ATATTTGTTGTGTTCTTTAGAGAGGTGAGTGGATGAGTGAGTGGGTTTCAGTGTTCCCAGAAAA
TAAATACAGCACTTTCAGCACGTATGAGAGTATTTTACAAAGCTTTTTATGTAGAGAATGTGAG
CTCCAACTTAAGTGTTCATGGAATGATGTAAGTGTTGGCTATGTCAATCTGAAATAATACTGAG
TGCCTCCAATGTAAGACTTCTTTACTAGGAATGAAATCATACTGTATCTTCTGTTGTTGTATGT
AAGTTTATATCTGAGAAGTAATACTTATTTTTAAATATTTTGTTAGTAAAGCTTATTATATACT
GTAATCTAACTAGTAATTTAGCATTGCTTACAAATGAATTGAGCCCACTTTTTTGAAAATAAAG
TTCTGCTAAAATTATTTAAGTTCAGAAGGAAGTTGACTTTTAAAACTCAGACCTTTAACATTTA
ATCTTTCTGGCCTTTATTTAATCCATTTGATGTTTTATGATGAGATACACACTATTTGTGTTAT
TGTTGGAAATAGATTGTGTGTTTCAGCACGTTGAGTTAAAATAAAATTGTTACTACTTATTTAG
AATTAA

hide sequence

RefSeq Acc Id:

XM_017591627 ⟹ XP_017447116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	26,478,535 - 26,552,343 (-)	NCBI
mRatBN7.2	3	6,074,681 - 6,148,506 (-)	NCBI
Rnor_6.0	3	397,834 - 471,647 (-)	NCBI

Sequence:

show sequence

GCTCCTTGGCGCACGCGCGACTGGAGGGGCGGAAACTGGACGCCACAGCCTCAGGAGTTGGAGG
GGGTTCAGGCTAGGAGCACTCTTTCGCGCCCGGTTTGTTTACTGTGGGGAAGAAGTTTAGCATC
CGGTGAGAACAAGGAGGGAGGCCAGGAGGAGGATGCAGCTTGGCCGGGGCGCCCGCTGCAGGAG
CTCGCCGCCGCCTCAGCCTCGGCCCCCGGGGCCTCCGAGGGTCCGCCCGCCGCCCCTCGTGTCC
GGTTAAATTATTCAAGTTTGTGGCATACTATATGAATCTTACGACTGTCATAAGGTGGCAATGT
CTCGGGAACCTACCCCTCCTCTGCCTGGAGATATGTCTACTAGTCCTGTTGCGGAAAGCTGGTG
CTACACACAGGTTAAAGTAGTGAAATTTTCCTACATGTGGACTATTAATAACTTCAGTTTTTGT
CGAGAAGAAATGGGTGAAGTGTTAAAGAGTTCAACATTTTCTTCTGGCCCAAATGATAAAATGA
AATGGTGCCTGAGGGTAAACCCAAAAGGCCTAGATGAGGAAAGTAGAGACTACTTGTCCTTGTA
TTTGCTTCTGGTCAGCTGCCCGAAGAGTGAGGTTCGAGCTAAATTCAAATTTTCTCTTCTGAAT
GCTAAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTACAGGGGAAGG
ATTGGGGATTTAAAAAATTCATTAGAAGGGATTTTTTGCTTGACGAAGCTAATGGTCTCCTTCC
AGATGACAAGCTTACGTTATTCTGTGAGGTGAGTGTGGTCCAAGATTCAGTAAATGTATCAGGA
CATACTAATACAAACACTTTGAAGGTGCCAGAATGTCGGCTAGCAGAAGACTTAGGGAATCTTT
GGGAAAACACAAGATTTACAGATTGCTGCTTTTTTGTGAGAGGAAAAGAATTCAAAGCTCATAA
GTCAGTGCTTGCAGCTCGATCCCCAGTTTTTAATGCAATGTTTGAACATGAAATGGAAGAATGC
ACAAAGAATCGAGTGGAAATAAATGATTTAGACCCTGAGGTTTTTAAAGAAATGATGAGATTCG
TTTACACAGGAAAGGCACCAAATCTTGATAAAATGGCTGACAACTTGTTGGCAGCTGCAGATAA
ATATGCACTGGAACGGCTGAAGGTCATGTGTGAAGAAGCTTTGTGTAGTAACCTCTCAGTAGAA
AATGTTGCTGATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCCCAGGCAA
TAGACTTTATTAATAGGTGCAGTGTTCTTCGACAACTTGGGTGTAAGGATGGGAAAAACTGGAA
CAACAACCAAGCAACTGACATAATGGAAACATCAGGGTGGAAGTCCATGATTCAGTCTCGTCCT
CATTTAGTGGCAGAAGCCTTCCGAGCACTTGCTTCTTCACAGTGTCCACAGTTTGGTATTCCAC
GCAAAAGGTTAAAGCAGTCTTGAGTCTTCCACAGACAATAGAAAGGTCCCGAAGGACTCCAATA
CAAACCATAAGCAGCAGTTGTTTCTGTCTCTTGTCCACAGAGCAGGAGCTGGAAAAGCATATTG
CTTGCTTTCACGTGGATAATTTATGGTTTATACTTCAGCTTTAAATCTGACTAATTAATTCACT
TCAAGGCCTTAAATTGTCTTCAGTGACTTCTCTTGTTCATATAATAGTTTTGTTTTGTTTTGTT
ATTGTGCCTTGTCAGTTTGCCAAGGCCATGCAGGATTGCACTAGCTCCACAATGCAGTAATATT
GATAACTGATAATACTGGGTTTCAAAGGATCTTCCATTATTTTAAAAACAAAAGATTTTATAGG
TTTTGTTCTATGTGATCTCCAAGTATCAAACTAGGTTCTTTTGGATTTGGAGATTGCCAGAGGC
ACCTCCAGTCTCAGTTGTGTAGACACTAAAGAGCCTGTTACCATCTAGGTAAATGATGGCCATA
CACTGCTCTGTTTTTTTTTTTTTTTTTTTTTCATTTCAAGGGACAGGTAATGAGTTGATCTAAA
GTTTTAGTAATATTTGTAGTGTTTGTCTATATATTAACTGCTCAAGAAACTGGGTTTATGCACA
TTTGTAAAGATTGAAAAATAATGTTAAGATTTCGATAAAAAGAAAGCATGGCTTTTGTTAATAT
TTTAAATTTATAATGACTTTCATTTGAAAGAAAAATTCAATAGGCGTGTAAGTCAGGATGACCA
ATGTACATGTAATGAGCGGGCCAATTAAGAAAGGTATATTTGCACTTTTAATGTGGAAGTTTTC
TATGATGAATGGCACATATATTTTTTTTAGGTGGATTAATAAGATTTTAATTATGTTTCAACAT
TTAAAAGAAGTTTTTATGACATATGGAGCCCAACTTGGATATTCATGATAATAGATAAAATTAT
GCTTGATTGGATTTCAAATTATTATTATTTGAGTTTATTTTAGCTTTATCACATTTGGGGAAGG
CACCTAACAGTAAATGAGCCCCATATAGTCTGCTTCTTTTCAAAGGAATTAACAGATACTTGCT
TGTGCACGCTGTGTGGGGAAGCAGAGTGAGTATGTGCAACCGCACTAGGAATCTTTTCTCCTCG
GTGGCTCAGTTGCTAACATGGCAGATTATTGAAATTTTGCATAATGTCAACAGCATAAATGTTT
CCTGTTAACTGTTTTAAGTGAACCAGTTTTTTATTGTTATTAAAGTTTAGCTTTAAACACAAAA
ATGTTTTAGTAGTTGGGAGATCTGTTGTGATGCATTGTTCTAGAGAAGCAGGAGTGGTCAGTGT
CAGATCACTGATGATATGCTTTCTACATAAAGATAGAGCATGTTACTGGAAAAACAGGTGTATG
TACCTGTATTTTGCATATATAGCTTATTCCCTGTATTAAATTTTACATGCTTTTTTTATTTAGT
TATAAAATTCAGGAAAAAAGCATAATGTTTTAAAATAGACTATTTTTAACTATAGCTTTTTAGC
TGTTAACTAAAGCAATCTTAAAATACATTGAGAAAATACTGTCAAATCATTAGTTATCAAGAGA
AAACAAAGATTGTAGTTTTAGATATTTTAGTTTTGATTCTTTGTTGTGTTAAAATGGTAAGATT
ATTTGGGATAGAGGAAAAATTTTCAAGTGACAGTGGGCTTTACCCTATAAAAGAATCATGATGA
GCAAAAATTTATTCCCTTAATTTCATCATAAAACAAGTCCTGTTACATTAACAGCGCAAACTTC
TAAACACATATATACACACTTTTAATACAAGATATTTTCATGGTCTGGCAAAAAGCAAAGATTC
CCCTCAGCTGGTGGAATACATTGTCACATATCATAAAAACACTGTACATATGTACAACGTATGT
AAATTGATTCATTGATTTGGTCTATATTTCTAACCATGGTGAAATCAGTAGTAATGCCATATAA
TAAACATTGTAAATGTTGATTGATAATGTTCAGGATTTTCTTATACAGGCTTTTGGTTTTACTT
TGCTAACATATTTTCTACCAAAAAAATTCAACACTGTGCTCTATAAATACCAGTGTTTGCTGAA
ATGCCCACATTTTAGATGGTACATACACTCACAGAATCATACAATCTTTTCTCTCTCTCTTTTT
TTAATGTGTATTTTAGTAGTTTTGGTTCTTGAGTGTGTGGTAAAAGGCTGTTTGCATTTTCCTC
ATTCACTCATTTTTAAACTATCTATATAAATACAACTTGGGTATGATTTTTGCTTAATGCAGTC
TTTGTGCTTTAAGTTACCAGTTTGCTCCTCTTACCTTCTAGTCACCTAAACAAGACTTTTCTCA
GAACACAATGACTGGTTTTAAATATTACAATTTAAAAATGTATCTATTAGAAAACTGTTCTTTA
GAGTAAGATTTAGAAATACGGTATTTGTGCCTTTTTCATTGTTTTTCTTTTAATGTGTTTTGAT
ATTTGGAGCACAAATATAAAGGTGCCATAAGATGGCTTGCTCATGTTACCTCCTTAAATTTTTC
TATGTTACTATCTTCAAATAATAATTGGAGAACCTTGAACGAAATGTGGTTCTTTATGTGAGAT
ATGTATGTGTTTGTATTTTCTTAAGCTGTGTGAAATATGTTTAAGAGTGAATTTATGAAAATAG
AACTTGGTTAAATATGCGTGTGCTTTATTTAAAAAGACAGTAGATTGCCAGAAGACAGTGTAAT
CCTCAAAAATGTGACCAGCATTCTACATTATAAAATAGGAAAATAGTGCTATTTTACATTATCA
AGAATAATTAAATTTTAAAAATAGTTGCTTTAAATATTTTAAAGTGTCATGAACATTATTATTT
TATTTTTTAACTCGATCGAATTGAGAGTTTAAATTTTCAGAAATATTAATTTGTTCATTTAAAG
CTTTATTCATGAATTTTAAGTTGTTATGTGAAATTATAGATAAGGGCCTCAAGTATGGCTCAGT
GATAGATAGTGTGTTTATGAATATTTGTGATCCATGTGTTGGATCCATAGCAATACCAACAAAC
AAAAAGATGGGATCGTAGATATGATTCATTTAGAAAACAGAAGCAAAGACTTGGGTAAGTTTTA
TGAAAATCTAACGCAGCAGTTTTACTACAAGTCACATGTTCATGAAGAGGTGAAGTAATCTCTT
TTGGTCATGTCTGGTCTTTGATGGTTACAATGGAAATATTTGTTGTGTTCTTTAGAGAGGTGAG
TGGATGAGTGAGTGGGTTTCAGTGTTCCCAGAAAATAAATACAGCACTTTCAGCACGTATGAGA
GTATTTTACAAAGCTTTTTATGTAGAGAATGTGAGCTCCAACTTAAGTGTTCATGGAATGATGT
AAGTGTTGGCTATGTCAATCTGAAATAATACTGAGTGCCTCCAATGTAAGACTTCTTTACTAGG
AATGAAATCATACTGTATCTTCTGTTGTTGTATGTAAGTTTATATCTGAGAAGTAATACTTATT
TTTAAATATTTTGTTAGTAAAGCTTATTATATACTGTAATCTAACTAGTAATTTAGCATTGCTT
ACAAATGAATTGAGCCCACTTTTTTGAAAATAAAGTTCTGCTAAAATTATTTAAGTTCAGAAGG
AAGTTGACTTTTAAAACTCAGACCTTTAACATTTAATCTTTCTGGCCTTTATTTAATCCATTTG
ATGTTTTATGATGAGATACACACTATTTGTGTTATTGTTGGAAATAGATTGTGTGTTTCAGCAC
GTTGAGTTAAAATAAAATTGTTACTACTTATTTAGAATTAA

hide sequence

RefSeq Acc Id:

XM_039104707 ⟹ XP_038960635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	26,478,535 - 26,542,823 (-)	NCBI
mRatBN7.2	3	6,074,681 - 6,138,971 (-)	NCBI

RefSeq Acc Id:

XM_063283453 ⟹ XP_063139523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	26,478,535 - 26,552,344 (-)	NCBI

RefSeq Acc Id:

XR_005501835

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	26,482,390 - 26,552,344 (-)	NCBI
mRatBN7.2	3	6,078,530 - 6,148,508 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001127919	(Get FASTA)	NCBI Sequence Viewer
	NP_001418499	(Get FASTA)	NCBI Sequence Viewer
	NP_001418500	(Get FASTA)	NCBI Sequence Viewer
	XP_017447114	(Get FASTA)	NCBI Sequence Viewer
	XP_017447115	(Get FASTA)	NCBI Sequence Viewer
	XP_017447116	(Get FASTA)	NCBI Sequence Viewer
	XP_038960635	(Get FASTA)	NCBI Sequence Viewer
	XP_063139523	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67106	(Get FASTA)	NCBI Sequence Viewer
	EDL93676	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035106
	ENSRNOP00000035106.4
	ENSRNOP00000075640
	ENSRNOP00000075640.1

RefSeq Acc Id:

NP_001127919 ⟸ NM_001134447

- UniProtKB:

B2RZC7 (UniProtKB/TrEMBL), F7FKB4 (UniProtKB/TrEMBL), A0A8I5Y679 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSREPTPPLPGDMSTSPVAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSSGPNDK
MKWCLRVNPKGLDEESRDYLSLYLLLVSCPKSEVRAKFKFSLLNAKREETKAMESQRAYRFVQG
KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNVSGHTNTNTLKVPECRLAEDLGN
LWENTRFTDCCFFVRGKEFKAHKSVLAARSPVFNAMFEHEMEECTKNRVEINDLDPEVFKEMMR
FVYTGKAPNLDKMADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQ
AIDFINRCSVLRQLGCKDGKNWNNNQATDIMETSGWKSMIQSRPHLVAEAFRALASSQCPQFGI
PRKRLKQS

hide sequence

RefSeq Acc Id:

XP_017447114 ⟸ XM_017591625

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSREPTPPLPGDMSTSPVAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSSGPNDK
MKWCLRVNPKGLDEESRDYLSLYLLLVSCPKSEVRAKFKFSLLNAKREETKAMESQRAYRFVQG
KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEHLQHCLQKRWKHCTALPKELAPPLHCKWCCRQ
VSVVQDSVNVSGHTNTNTLKVPECRLAEDLGNLWENTRFTDCCFFVRGKEFKAHKSVLAARSPV
FNAMFEHEMEECTKNRVEINDLDPEVFKEMMRFVYTGKAPNLDKMADNLLAAADKYALERLKVM
CEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNNNQATDIME
TSGWKSMIQSRPHLVAEAFRALASSQCPQFGIPRKRLKQS

hide sequence

RefSeq Acc Id:

XP_017447116 ⟸ XM_017591627

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSREPTPPLPGDMSTSPVAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSSGPNDK
MKWCLRVNPKGLDEESRDYLSLYLLLVSCPKSEVRAKFKFSLLNAKREETKAMESQRAYRFVQG
KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNVSGHTNTNTLKVPECRLAEDLGN
LWENTRFTDCCFFVRGKEFKAHKSVLAARSPVFNAMFEHEMEECTKNRVEINDLDPEVFKEMMR
FVYTGKAPNLDKMADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQ
AIDFINRCSVLRQLGCKDGKNWNNNQATDIMETSGWKSMIQSRPHLVAEAFRALASSQCPQFGI
PRKRLKQS

hide sequence

RefSeq Acc Id:	XP_017447115 ⟸ XM_017591626
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KB38 (UniProtKB/TrEMBL), A0A8I5Y679 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSREPTPPLPGDMSTSPVAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSSGPNDK MKWCLRVNPKGLDEESRDYLSLYLLLVSCPKSEVRAKFKFSLLNAKREETKAMESQRAYRFVQG KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEHLQHCLQKRWKHCTALPKELAPPLHCKWCCRQ VSVVQDSVNVSGHTNTNTLKVPECRLAEDLGNLWENTRFTDCCFFVRGKEFKAHKSVLAARSPV FNAMFEHEMEECTKNRVEINDLDPEVFKEMMRFVYTGKAPNLDKMADNLLAAADKYALERLKVM CEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNNNQATDIME TSGWKSMIQSRPHLVAEAFRALASSQCPQFGIPRKRLKQS hide sequence

Ensembl Acc Id:

ENSRNOP00000035106 ⟸ ENSRNOT00000033653

Ensembl Acc Id:

ENSRNOP00000075640 ⟸ ENSRNOT00000081816

RefSeq Acc Id:	XP_038960635 ⟸ XM_039104707
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KB38 (UniProtKB/TrEMBL), A0A8I5Y679 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000077719 ⟸ ENSRNOT00000095228

RefSeq Acc Id:	XP_063139523 ⟸ XM_063283453
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KB38 (UniProtKB/TrEMBL), A0A8I5Y679 (UniProtKB/TrEMBL)

Protein Domains

BTB MATH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KB38-F1-model_v2	AlphaFold	A0A0G2KB38	1-424	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691854

Promoter ID:

EPDNEW_R2370

Type:

initiation region

Name:

Spopl_1

Description:

speckle type BTB/POZ protein like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	471,615 - 471,675	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305847	AgrOrtholog
BioCyc Gene	G2FUF-50533	BioCyc
Ensembl Genes	ENSRNOG00000005070	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033653	ENTREZGENE
	ENSRNOT00000033653.6	UniProtKB/TrEMBL
	ENSRNOT00000081816	ENTREZGENE
	ENSRNOT00000081816.3	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.3030	UniProtKB/TrEMBL
	6.20.250.50	UniProtKB/TrEMBL
	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133920	IMAGE-MGC_LOAD
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
	TRAF-like	UniProtKB/TrEMBL
KEGG Report	rno:296532	UniProtKB/TrEMBL
MGC_CLONE	MGC:189563	IMAGE-MGC_LOAD
NCBI Gene	296532	ENTREZGENE
PANTHER	SPECKLE-TYPE POZ PROTEIN	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	MATH_2	UniProtKB/TrEMBL
PhenoGen	Spopl	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005070	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	TRAF domain-like	UniProtKB/TrEMBL
UniProt	A0A0G2KB38	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y679	ENTREZGENE
	B2RZC7	ENTREZGENE, UniProtKB/TrEMBL
	F7FKB4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Spopl	speckle type BTB/POZ protein like	Spopl	speckle-type POZ protein-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Spopl	speckle-type POZ protein-like	RGD1305847_predicted	similar to speckle-type POZ protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1305847_predicted	similar to speckle-type POZ protein (predicted)	LOC296532_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296532_predicted	similar to speckle-type POZ protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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