Gpr158 (G protein-coupled receptor 158) - Rat Genome Database

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Gene: Gpr158 (G protein-coupled receptor 158) Rattus norvegicus
Analyze
Symbol: Gpr158
Name: G protein-coupled receptor 158
RGD ID: 1305841
Description: Predicted to enable G protein-coupled glycine receptor activity and enzyme activator activity. Predicted to be involved in several processes, including positive regulation of neurotransmitter secretion; protein localization to plasma membrane; and regulation of G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in postsynaptic density membrane. Orthologous to human GPR158 (G protein-coupled receptor 158); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291352; metabotropic glycine receptor; mGlyR; probable G-protein coupled receptor 158; similar to G protein-coupled receptor 158 isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81788,685,879 - 89,152,659 (+)NCBIGRCr8
mRatBN7.21783,777,625 - 84,244,428 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1783,834,569 - 84,244,428 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1787,313,345 - 87,722,843 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01791,148,711 - 91,558,238 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01785,165,655 - 85,575,174 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01788,215,131 - 88,654,352 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1788,215,834 - 88,651,476 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01789,902,429 - 90,335,831 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41795,323,129 - 95,730,463 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11795,333,685 - 95,738,420 (+)NCBI
Celera1784,638,349 - 84,841,527 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gpr158Rathepatocellular carcinoma  ISORGD:131411711554173CTD Direct Evidence: marker/mechanismCTDPMID:28284560

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gpr158Rat1,2-dimethylhydrazine decreases expressionISORGD:155230764804641,2-Dimethylhydrazine results in decreased expression of GPR158 mRNACTDPMID:22206623
Gpr158Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISORGD:13141176480464Dihydrotestosterone results in increased expression of GPR158 mRNACTDPMID:29581250
Gpr158Rat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISORGD:131411764804642,2',4,4'-tetrabromodiphenyl ether analog results in increased expression of GPR158 mRNACTDPMID:19095052
Gpr158Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:15523076480464Tetrachlorodibenzodioxin affects the expression of GPR158 mRNACTDPMID:21570461
Gpr158Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of GPR158 mRNACTDPMID:32109520
Gpr158Rat4,4'-sulfonyldiphenol multiple interactionsISORGD:13141176480464[bisphenol S co-treated with Fulvestrant] results in decreased methylation of GPR158 geneCTDPMID:31601247
Gpr158Rat4,4'-sulfonyldiphenol affects methylationISORGD:15523076480464bisphenol S affects the methylation of GPR158 geneCTDPMID:31683443
Gpr158Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of GPR158 mRNACTDPMID:24780913|PMID:25825206
Gpr158Rataflatoxin B1 decreases methylationISORGD:13141176480464Aflatoxin B1 results in decreased methylation of GPR158 gene; Aflatoxin B1 results in decreased methylation more ...CTDPMID:27153756|PMID:30157460
Gpr158RatAflatoxin B2 alpha increases methylationISORGD:13141176480464aflatoxin B2 results in increased methylation of GPR158 intronCTDPMID:30157460
Gpr158Ratarsenite(3-) increases methylationISORGD:13141176480464arsenite results in increased methylation of GPR158 promoterCTDPMID:23974009
Gpr158Ratatrazine affects methylationEXP 6480464Atrazine affects the methylation of GPR158 geneCTDPMID:28931070
Gpr158Ratbenzo[a]pyrene increases methylationISORGD:13141176480464Benzo(a)pyrene results in increased methylation of GPR158 3' UTRCTDPMID:27901495
Gpr158Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of GPR158 mRNACTDPMID:25181051|PMID:30816183|PMID:32528016|PMID:34947998
Gpr158Ratbisphenol A decreases expressionISORGD:15523076480464bisphenol A results in decreased expression of GPR158 mRNACTDPMID:32156529
Gpr158Ratbisphenol A multiple interactionsEXP 6480464[bisphenol A co-treated with tributyltin] results in increased expression of GPR158 mRNACTDPMID:31129395
Gpr158Ratbisphenol A decreases expressionISORGD:13141176480464bisphenol A results in decreased expression of GPR158 mRNACTDPMID:27685785
Gpr158Ratcadmium atom multiple interactionsISORGD:13141176480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of GPR158 more ...CTDPMID:35301059
Gpr158Ratcadmium dichloride multiple interactionsISORGD:13141176480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of GPR158 more ...CTDPMID:35301059
Gpr158Ratcyclosporin A increases expressionISORGD:13141176480464Cyclosporine results in increased expression of GPR158 mRNACTDPMID:20106945

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Biological Process
1 to 20 of 28 rows

  
Object Symbol
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Evidence
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Reference
Notes
Source
Original Reference(s)
Gpr158Ratbrain development involved_inIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratbrain development involved_inISORGD:15523071624291 PMID:28851741RGDPMID:28851741
Gpr158Ratcognition involved_inISSUniProtKB:Q8C4191600115GO_REF:0000024UniProtGO_REF:0000024
Gpr158Ratcognition involved_inISORGD:15523071624291 PMID:25792749, PMID:28851741RGDPMID:25792749|PMID:28851741
Gpr158Ratcognition involved_inIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158RatG protein-coupled receptor signaling pathway involved_inISSUniProtKB:Q5T8481600115GO_REF:0000024UniProtGO_REF:0000024
Gpr158RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Gpr158RatG protein-coupled receptor signaling pathway acts_upstream_of_or_withinIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158RatG protein-coupled receptor signaling pathway involved_inISORGD:15523071624291 PMID:25792749RGDPMID:25792749
Gpr158RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR0179781600115GO_REF:0000002InterProGO_REF:0000002
Gpr158RatG protein-coupled receptor signaling pathway acts_upstream_of_or_withinISORGD:15523071624291MGI:1346089 PMID:22689652RGDPMID:22689652
Gpr158RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB:Q5T848|ensembl:ENSP000003655291600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158RatG protein-coupled receptor signaling pathway involved_inISORGD:13141171624291 PMID:31189666RGDPMID:31189666
Gpr158Ratpositive regulation of neurotransmitter secretion involved_inIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratpositive regulation of neurotransmitter secretion involved_inISORGD:15523071624291 PMID:28851741RGDPMID:28851741
Gpr158Ratprotein localization to plasma membrane involved_inISSUniProtKB:Q8C4191600115GO_REF:0000024UniProtGO_REF:0000024
Gpr158Ratprotein localization to plasma membrane acts_upstream_of_or_withinIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratprotein localization to plasma membrane acts_upstream_of_or_withinISORGD:15523071624291 PMID:22689652RGDPMID:22689652
Gpr158Ratprotein localization to plasma membrane involved_inISORGD:15523071624291 PMID:25792749RGDPMID:25792749
Gpr158Ratprotein localization to plasma membrane involved_inIEAUniProtKB:Q5T848|ensembl:ENSP000003655291600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Object Symbol
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Reference
Notes
Source
Original Reference(s)
Gpr158Ratcell projection located_inIEAUniProtKB-KW:KW-09661600115GO_REF:0000043UniProtGO_REF:0000043
Gpr158Ratmembrane located_inIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratmembrane located_inIEAInterPro:IPR0179781600115GO_REF:0000002InterProGO_REF:0000002
Gpr158Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Gpr158Ratmembrane located_inISORGD:15523071624291 PMID:22689652RGDPMID:22689652
Gpr158Ratneuron projection located_inIEAUniProtKB-SubCell:SL-05181600115GO_REF:0000044UniProtGO_REF:0000044
Gpr158Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Gpr158Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Gpr158Ratplasma membrane is_active_inISSUniProtKB:Q5T8481600115GO_REF:0000024UniProtGO_REF:0000024
Gpr158Ratplasma membrane is_active_inIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratplasma membrane is_active_inISORGD:15523071624291 PMID:30546127RGDPMID:30546127
Gpr158Ratplasma membrane is_active_inIEAUniProtKB:Q5T848|ensembl:ENSP000003655291600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Gpr158Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Gpr158Ratplasma membrane is_active_inISORGD:13141171624291 PMID:31189666RGDPMID:31189666
Gpr158Ratpostsynaptic density membrane is_active_inISORGD:15523071624291 PMID:30290982RGDPMID:30290982
Gpr158Ratpostsynaptic density membrane is_active_inIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratpostsynaptic membrane is_active_inISORGD:15523071624291 PMID:30290982RGDPMID:30290982
Gpr158Ratpostsynaptic membrane is_active_inIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratpostsynaptic membrane located_inIEAUniProtKB-SubCell:SL-02191600115GO_REF:0000044UniProtGO_REF:0000044
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Molecular Function
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Object Symbol
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Evidence
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Reference
Notes
Source
Original Reference(s)
Gpr158Ratenzyme activator activity enablesISSUniProtKB:Q5T8481600115GO_REF:0000024UniProtGO_REF:0000024
Gpr158Ratenzyme activator activity enablesISORGD:15523071624291 PMID:25792749RGDPMID:25792749
Gpr158Ratenzyme activator activity enablesIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratenzyme activator activity enablesIEAUniProtKB:Q5T848|ensembl:ENSP000003655291600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Ratenzyme activator activity enablesISORGD:13141171624291 PMID:31189666, PMID:36996198RGDPMID:31189666|PMID:36996198
Gpr158RatG protein-coupled glycine receptor activity enablesISSUniProtKB:Q5T8481600115GO_REF:0000024UniProtGO_REF:0000024
Gpr158RatG protein-coupled glycine receptor activity enablesIEAUniProtKB:Q5T848|ensembl:ENSP000003655291600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158RatG protein-coupled glycine receptor activity enablesISORGD:13141171624291 PMID:36996198RGDPMID:36996198
Gpr158RatG protein-coupled receptor activity enablesIEAInterPro:IPR0179781600115GO_REF:0000002InterProGO_REF:0000002
Gpr158RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Gpr158Ratprotein binding enablesISORGD:15523071624291PR:O54829|PR:P62881|PR:Q9Z2H2|UniProtKB:P31431|UniProtKB:P35052|UniProtKB:P78333 PMID:22689652, PMID:30282023RGDPMID:22689652|PMID:30282023
Gpr158Rattransmembrane signaling receptor activity enablesISSUniProtKB:Q8C4191600115GO_REF:0000024UniProtGO_REF:0000024
Gpr158Rattransmembrane signaling receptor activity enablesIEAUniProtKB:Q8C419|ensembl:ENSMUSP000000497081600115GO_REF:0000107EnsemblGO_REF:0000107
Gpr158Rattransmembrane signaling receptor activity enablesISORGD:15523071624291 PMID:25792749, PMID:28851741RGDPMID:25792749|PMID:28851741
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#
Reference Title
Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:22689652   PMID:36634900  



Gpr158
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81788,685,879 - 89,152,659 (+)NCBIGRCr8
mRatBN7.21783,777,625 - 84,244,428 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1783,834,569 - 84,244,428 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1787,313,345 - 87,722,843 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01791,148,711 - 91,558,238 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01785,165,655 - 85,575,174 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01788,215,131 - 88,654,352 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1788,215,834 - 88,651,476 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01789,902,429 - 90,335,831 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41795,323,129 - 95,730,463 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11795,333,685 - 95,738,420 (+)NCBI
Celera1784,638,349 - 84,841,527 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
GPR158
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381025,175,001 - 25,602,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1025,174,802 - 25,602,229 (+)EnsemblGRCh38hg38GRCh38
GRCh371025,463,930 - 25,891,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361025,504,296 - 25,931,164 (+)NCBINCBI36Build 36hg18NCBI36
Celera1025,165,702 - 25,598,388 (+)NCBICelera
Cytogenetic Map10p12.1NCBI
HuRef1025,124,846 - 25,550,757 (+)NCBIHuRef
CHM1_11025,464,879 - 25,891,900 (+)NCBICHM1_1
T2T-CHM13v2.01025,193,234 - 25,626,794 (+)NCBIT2T-CHM13v2.0
Gpr158
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39221,372,378 - 21,835,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl221,372,353 - 21,835,358 (+)EnsemblGRCm39 Ensembl
GRCm38221,367,567 - 21,830,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl221,367,542 - 21,830,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv37221,289,194 - 21,752,171 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36221,285,321 - 21,748,298 (+)NCBIMGSCv36mm8
Celera221,246,752 - 21,710,952 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map214.92NCBI
Gpr158
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554293,641,709 - 4,053,869 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554293,641,764 - 4,053,860 (-)NCBIChiLan1.0ChiLan1.0
GPR158
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2837,876,693 - 38,299,274 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11037,881,597 - 38,304,599 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01025,352,131 - 25,777,652 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11025,721,768 - 26,143,954 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1025,722,127 - 26,140,997 (+)Ensemblpanpan1.1panPan2
GPR158
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.127,969,781 - 8,379,657 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl27,971,800 - 8,378,198 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26,664,668 - 7,073,497 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.026,168,494 - 6,578,286 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26,168,494 - 6,578,139 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.125,538,054 - 5,948,261 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.025,616,670 - 6,026,418 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.025,782,879 - 6,192,914 (-)NCBIUU_Cfam_GSD_1.0
Gpr158
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934424,670,867 - 25,061,002 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936484836,700 - 1,226,162 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936484835,886 - 1,224,450 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR158
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1049,862,312 - 50,202,453 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11049,862,312 - 50,202,748 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21055,286,186 - 55,471,492 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPR158
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1924,903,263 - 25,310,817 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605130,863,478 - 31,284,650 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpr158
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247963,302,496 - 3,806,219 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247963,299,535 - 3,806,346 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Gpr158
3559 total Variants

Predicted Target Of
Summary Value
Count of predictions:331
Count of miRNA genes:197
Interacting mature miRNAs:236
Transcripts:ENSRNOT00000034098
Prediction methods:Miranda, Pita
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat

D17Got107  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21784,150,477 - 84,150,623 (+)MAPPERmRatBN7.2
Rnor_6.01788,559,593 - 88,559,738NCBIRnor6.0
Rnor_5.01790,242,677 - 90,242,822UniSTSRnor5.0
Celera1784,731,947 - 84,732,092UniSTS
RH 3.4 Map17868.8RGD
RH 3.4 Map17868.8UniSTS
Cytogenetic Map17q12.3UniSTS
BE119491  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21783,922,999 - 83,923,164 (+)MAPPERmRatBN7.2
Rnor_6.01788,336,752 - 88,336,916NCBIRnor6.0
Rnor_5.01790,022,350 - 90,022,514UniSTSRnor5.0
RGSC_v3.41795,414,071 - 95,414,235UniSTSRGSC3.4
Celera1783,176,898 - 83,177,062UniSTS
RH 3.4 Map17876.4UniSTS
Cytogenetic Map17q12.3UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 6 22 113 75 74 49 11 49 6 134 53 93 18 56 25



Ensembl Acc Id: ENSRNOT00000034098   ⟹   ENSRNOP00000038884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1783,834,569 - 84,244,428 (+)Ensembl
Rnor_6.0 Ensembl1788,215,834 - 88,651,476 (+)Ensembl
RefSeq Acc Id: NM_001170326   ⟹   NP_001163797
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,742,823 - 89,152,658 (+)NCBI
mRatBN7.21783,834,569 - 84,244,428 (+)NCBI
Rnor_6.01788,215,131 - 88,654,352 (+)NCBI
Rnor_5.01789,902,429 - 90,335,831 (+)NCBI
RGSC_v3.41795,323,129 - 95,730,463 (+)RGD
Celera1784,638,349 - 84,841,527 (-)RGD
Sequence:
RefSeq Acc Id: XM_039095563   ⟹   XP_038951491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,685,879 - 89,152,659 (+)NCBI
mRatBN7.21783,777,625 - 84,244,422 (+)NCBI
RefSeq Acc Id: XM_039095564   ⟹   XP_038951492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,685,900 - 89,152,659 (+)NCBI
mRatBN7.21783,777,644 - 84,244,422 (+)NCBI
Protein RefSeqs NP_001163797 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951491 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951492 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D4A6L0 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038884
RefSeq Acc Id: NP_001163797   ⟸   NM_001170326
- Peptide Label: precursor
- UniProtKB: D4A6L0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038884   ⟸   ENSRNOT00000034098
RefSeq Acc Id: XP_038951491   ⟸   XM_039095563
- Peptide Label: isoform X1
- UniProtKB: D4A6L0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038951492   ⟸   XM_039095564
- Peptide Label: isoform X1
- UniProtKB: D4A6L0 (UniProtKB/Swiss-Prot)
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6L0-F1-model_v2 AlphaFold D4A6L0 1-1202 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 17 of 17 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-8498 BioCyc
Ensembl Genes ENSRNOG00000024832 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000034098 ENTREZGENE
Gene3D-CATH PAS domain UniProtKB/Swiss-Prot
InterPro GPCR_3_C UniProtKB/Swiss-Prot
  GPR158/179 UniProtKB/Swiss-Prot
  GPR158_179_extracellular UniProtKB/Swiss-Prot
NCBI Gene 291352 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR 158-RELATED UniProtKB/Swiss-Prot
  PTHR32546 UniProtKB/Swiss-Prot
Pfam 7tm_3 UniProtKB/Swiss-Prot
  GPR158_179_EC UniProtKB/Swiss-Prot
PhenoGen Gpr158 PhenoGen
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000024832 RatGTEx
UniProt A0A0A0MY13_RAT UniProtKB/TrEMBL
  D4A6L0 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Gpr158  G protein-coupled receptor 158  LOC686523  similar to G protein-coupled receptor 158 isoform a  Data merged from RGD:1596374 1643240 APPROVED
2013-05-24 Gpr158  G protein-coupled receptor 158  LOC678897  similar to G protein-coupled receptor 158 isoform a  Data merged from RGD:1595524 1643240 APPROVED
2008-04-30 Gpr158  G protein-coupled receptor 158   Gpr158_predicted  G protein-coupled receptor 158 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC686523  similar to G protein-coupled receptor 158 isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC678897  similar to G protein-coupled receptor 158 isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Gpr158_predicted  G protein-coupled receptor 158 (predicted)      Symbol and Name status set to approved 70820 APPROVED