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Gene: Anks3 (ankyrin repeat and sterile alpha motif domain containing 3) Rattus norvegicus

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Symbol:

Anks3

Name:

ankyrin repeat and sterile alpha motif domain containing 3

RGD ID:

1305833

Description:

Predicted to be located in cytoplasm. Predicted to be active in cilium. Orthologous to human ANKS3 (ankyrin repeat and sterile alpha motif domain containing 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ankyrin repeat and SAM domain-containing protein 3; LOC302937; MGC94228; RGD1305833; similar to RIKEN cDNA 2700067D09

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,121,504 - 11,142,261 (+)	NCBI		GRCr8
mRatBN7.2	10	10,614,953 - 10,635,815 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,615,047 - 10,635,806 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	15,323,559 - 15,344,216 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,812,376 - 14,833,033 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,481,506 - 10,502,164 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,808,780 - 10,829,507 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,808,823 - 10,831,535 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	10,732,109 - 10,752,778 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	10,732,108 - 10,752,776 (+)	NCBI
Celera	10	9,579,341 - 9,600,010 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Anks3	Rat	Dwarfism		ISO	ANKS3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Short stature	ClinVar
Anks3	Rat	epilepsy		ISO	ANKS3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Epilepsy	ClinVar	PMID:28492532
Anks3	Rat	Hydrops Fetalis		ISO	ANKS3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Non-immune hydrops fetalis	ClinVar	PMID:25741868
Anks3	Rat	Idiopathic Generalized Epilepsy		ISO	ANKS3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Idiopathic generalized epilepsy	ClinVar	PMID:28492532
Anks3	Rat	Kohlschutter-Tonz syndrome		ISO	ANKS3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Amelocerebrohypohidrotic syndrome	ClinVar	PMID:28492532
Anks3	Rat	Rubinstein-Taybi syndrome		ISO	ANKS3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Rubinstein-Taybi syndrome	ClinVar	PMID:12114483 more ...
Anks3	Rat	short-rib thoracic dysplasia 9 with or without polydactyly		ISO	ANKS3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Saldino-Mainzer syndrome	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Anks3	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Anks3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of ANKS3 mRNA	CTD	PMID:36331819
Anks3	Rat	1,2-dimethylhydrazine	increases expression	ISO	Anks3 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of ANKS3 mRNA	CTD	PMID:22206623
Anks3	Rat	17alpha-ethynylestradiol	affects expression	ISO	Anks3 (Mus musculus)	6480464	Ethinyl Estradiol affects the expression of ANKS3 mRNA	CTD	PMID:17555576
Anks3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Anks3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ANKS3 mRNA	CTD	PMID:21570461
Anks3	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of ANKS3 mRNA	CTD	PMID:33387578
Anks3	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Anks3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of ANKS3 mRNA	CTD	PMID:31961203
Anks3	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	Anks3 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of ANKS3 mRNA	CTD	PMID:20188158
Anks3	Rat	4,4'-sulfonyldiphenol	decreases methylation	ISO	Anks3 (Mus musculus)	6480464	bisphenol S results in decreased methylation of ANKS3 exon	CTD	PMID:33297965
Anks3	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of ANKS3 mRNA	CTD	PMID:30047161
Anks3	Rat	aflatoxin B1	increases methylation	ISO	ANKS3 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of ANKS3 gene	CTD	PMID:27153756
Anks3	Rat	Aflatoxin B2 alpha	decreases methylation	ISO	ANKS3 (Homo sapiens)	6480464	aflatoxin B2 results in decreased methylation of ANKS3 intron	CTD	PMID:30157460
Anks3	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of ANKS3 mRNA	CTD	PMID:30047161
Anks3	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of ANKS3 mRNA	CTD	PMID:30779732
Anks3	Rat	arsane	affects methylation	ISO	ANKS3 (Homo sapiens)	6480464	Arsenic affects the methylation of ANKS3 gene	CTD	PMID:32603190
Anks3	Rat	arsenic atom	affects methylation	ISO	ANKS3 (Homo sapiens)	6480464	Arsenic affects the methylation of ANKS3 gene	CTD	PMID:32603190
Anks3	Rat	atrazine	decreases expression	ISO	ANKS3 (Homo sapiens)	6480464	Atrazine results in decreased expression of ANKS3 mRNA	CTD	PMID:22378314
Anks3	Rat	azoxystrobin	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of ANKS3 mRNA	CTD	PMID:33854195
Anks3	Rat	beta-lapachone	increases expression	ISO	ANKS3 (Homo sapiens)	6480464	beta-lapachone results in increased expression of ANKS3 mRNA	CTD	PMID:38218311
Anks3	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ANKS3 mRNA	CTD	PMID:25181051
Anks3	Rat	bisphenol F	decreases expression	ISO	Anks3 (Mus musculus)	6480464	bisphenol F results in decreased expression of ANKS3 mRNA	CTD	PMID:38685157
Anks3	Rat	CGP 52608	multiple interactions	ISO	ANKS3 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to ANKS3 gene]	CTD	PMID:28238834
Anks3	Rat	chlorpyrifos	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of ANKS3 mRNA	CTD	PMID:33854195
Anks3	Rat	choline	multiple interactions	ISO	Anks3 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of ANKS3 gene	CTD	PMID:20938992
Anks3	Rat	coumarin	increases phosphorylation	ISO	ANKS3 (Homo sapiens)	6480464	coumarin results in increased phosphorylation of ANKS3 protein	CTD	PMID:35688186
Anks3	Rat	Dibutyl phosphate	affects expression	ISO	ANKS3 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of ANKS3 mRNA	CTD	PMID:37042841
Anks3	Rat	folic acid	multiple interactions	ISO	Anks3 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of ANKS3 gene	CTD	PMID:20938992
Anks3	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of ANKS3 mRNA	CTD	PMID:33387578
Anks3	Rat	glyphosate	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of ANKS3 mRNA	CTD	PMID:33854195
Anks3	Rat	imidacloprid	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of ANKS3 mRNA	CTD	PMID:33854195
Anks3	Rat	L-methionine	multiple interactions	ISO	Anks3 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of ANKS3 gene	CTD	PMID:20938992
Anks3	Rat	leflunomide	decreases expression	ISO	ANKS3 (Homo sapiens)	6480464	leflunomide results in decreased expression of ANKS3 mRNA	CTD	PMID:28988120
Anks3	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of ANKS3 mRNA	CTD	PMID:30047161
Anks3	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of ANKS3 mRNA	CTD	PMID:33387578
Anks3	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Anks3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of ANKS3 mRNA and [perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of ANKS3 mRNA	CTD	PMID:36331819
Anks3	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of ANKS3 mRNA	CTD	PMID:30047161
Anks3	Rat	tamoxifen	affects expression	ISO	Anks3 (Mus musculus)	6480464	Tamoxifen affects the expression of ANKS3 mRNA	CTD	PMID:17555576
Anks3	Rat	thiabendazole	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of ANKS3 mRNA	CTD	PMID:33854195
Anks3	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of ANKS3 mRNA	CTD	PMID:34492290
Anks3	Rat	thiram	increases expression	ISO	ANKS3 (Homo sapiens)	6480464	Thiram results in increased expression of ANKS3 mRNA	CTD	PMID:38568856
Anks3	Rat	titanium dioxide	increases methylation	ISO	Anks3 (Mus musculus)	6480464	titanium dioxide results in increased methylation of ANKS3 promoter	CTD	PMID:35295148
Anks3	Rat	valproic acid	increases methylation	ISO	ANKS3 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of ANKS3 gene	CTD	PMID:29154799
Anks3	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of ANKS3 mRNA	CTD	PMID:23034163

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Anks3	Rat	cell projection	located_in	IEA	UniProtKB-KW:KW-0966	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Anks3	Rat	cilium	located_in	ISO	Anks3 (Mus musculus)	1624291	PMID:26327442	RGD	PMID:26327442
Anks3	Rat	cilium	located_in	IEA	UniProtKB-SubCell:SL-0066	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Anks3	Rat	cilium	is_active_in	IBA	MGI:1919865 and PANTHER:PTN001194045	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Anks3	Rat	cytoplasm	located_in	ISS	UniProtKB:Q9CZK6	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Anks3	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Anks3	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Anks3	Rat	cytoplasm	located_in	ISO	Anks3 (Mus musculus)	1624291	PMID:26188091 and PMID:29395339	RGD	PMID:26188091 and PMID:29395339

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Anks3	Rat	protein binding	enables	ISO	ANKS3 (Homo sapiens)	1624291	UniProtKB:Q68DC2 more ...	RGD	PMID:24998259 and PMID:26188091
Anks3	Rat	protein binding	enables	ISO	Anks3 (Mus musculus)	1624291	PR:Q6GQX6 more ...	RGD	PMID:25671767 more ...

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:15489334	PMID:26188091	PMID:26327442	PMID:29395339

Anks3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,121,504 - 11,142,261 (+)	NCBI		GRCr8
mRatBN7.2	10	10,614,953 - 10,635,815 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,615,047 - 10,635,806 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	15,323,559 - 15,344,216 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,812,376 - 14,833,033 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,481,506 - 10,502,164 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,808,780 - 10,829,507 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,808,823 - 10,831,535 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	10,732,109 - 10,752,778 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	10,732,108 - 10,752,776 (+)	NCBI
Celera	10	9,579,341 - 9,600,010 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

ANKS3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	4,696,511 - 4,734,271 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	4,696,510 - 4,734,378 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	4,746,512 - 4,784,272 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	4,686,514 - 4,724,164 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	4,955,291 - 4,992,944 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	4,713,030 - 4,750,906 (-)	NCBI		HuRef
CHM1_1	16	4,747,292 - 4,785,140 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	4,725,963 - 4,763,728 (-)	NCBI		T2T-CHM13v2.0

Anks3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	4,759,290 - 4,783,362 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	4,759,300 - 4,782,069 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	4,941,415 - 4,965,537 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	4,941,436 - 4,964,205 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	4,941,420 - 4,964,330 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	4,856,671 - 4,879,505 (-)	NCBI		MGSCv36	mm8
Celera	16	5,572,755 - 5,595,570 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.48	NCBI

Anks3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	12,752,008 - 12,775,081 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	12,752,468 - 12,775,081 (+)	NCBI	ChiLan1.0	ChiLan1.0

ANKS3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	5,225,222 - 5,263,889 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	9,015,351 - 9,053,705 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	3,621,185 - 3,659,570 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	4,788,093 - 4,822,178 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	4,788,093 - 4,820,760 (-)	Ensembl	panpan1.1		panPan2

ANKS3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	36,678,916 - 36,711,096 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	36,669,590 - 36,710,807 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	6	36,882,187 - 36,914,161 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	36,882,347 - 36,914,158 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	36,676,333 - 36,708,012 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	36,569,127 - 36,600,861 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	36,971,269 - 37,003,540 (+)	NCBI		UU_Cfam_GSD_1.0

Anks3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	106,852,793 - 106,878,146 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	4,695,401 - 4,722,924 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	4,698,234 - 4,723,131 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANKS3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	37,650,256 - 37,689,500 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	37,664,182 - 37,689,502 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	38,725,118 - 38,748,113 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANKS3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	4,378,318 - 4,413,266 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	4,375,517 - 4,413,199 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	26,248,878 - 26,286,986 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Anks3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624824	2,478,608 - 2,505,257 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624824	2,478,608 - 2,507,287 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Anks3
69 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	247
Count of miRNA genes:	149
Interacting mature miRNAs:	165
Transcripts:	ENSRNOT00000004298
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6154182	15990232	Rat
1576304	Schws7	Schwannoma susceptibility QTL 7		0.0115	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	4765527	19816042	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	19233348	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	17245662	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat

BM384744

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	11,138,955 - 11,139,140 (+)	Marker Load Pipeline
mRatBN7.2	10	10,632,503 - 10,632,688 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	10,826,196 - 10,826,380	NCBI	Rnor6.0
Rnor_5.0	10	9,593,126 - 9,593,310	UniSTS	Rnor5.0
RGSC_v3.4	10	10,749,482 - 10,749,666	UniSTS	RGSC3.4
Celera	10	9,596,714 - 9,596,898	UniSTS
RH 3.4 Map	10	100.23	UniSTS
Cytogenetic Map	10	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001009676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004298 ⟹ ENSRNOP00000004298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	10,615,093 - 10,635,806 (+)	Ensembl
Rnor_6.0 Ensembl	10	10,808,823 - 10,829,490 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077347 ⟹ ENSRNOP00000070091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	10,615,047 - 10,635,800 (+)	Ensembl
Rnor_6.0 Ensembl	10	10,811,937 - 10,831,535 (+)	Ensembl

RefSeq Acc Id:

NM_001009676 ⟹ NP_001009676

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,561 - 11,142,261 (+)	NCBI
mRatBN7.2	10	10,615,107 - 10,635,809 (+)	NCBI
Rnor_6.0	10	10,808,823 - 10,829,492 (+)	NCBI
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI
RGSC_v3.4	10	10,732,109 - 10,752,778 (+)	RGD
Celera	10	9,579,341 - 9,600,010 (+)	RGD

Sequence:

show sequence

TGCAGCTGCTGCTGGAGGGTGGCGCGGGAACCTGAGGCCTTGCAGCCATGTCTGAGCTCAGCGATGAAGCCAGCGAGCCGGAGCTTCTGAACCGCAGCTTGTCCATGTGGCATGGACTTGGTGCACAG
GTCAGCAGAGAGGAGCTGGATGTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCAGTATGAGGTGGTGAAGGAGTGTGTGCAGCGGAGAGAGTTAGATTTGAATAAGAAGAATGGTGGTGGCTG
GACTCCGCTGATGTATGCCTCCTACATTGGACACGATACCATTGTTCACTTGCTGCTCGAGGCAGGTGTGAGTGTGAATGTGCCAACCCCAGAAGGACAGACTCCACTGATGCTGGCCTCCAGCTGTG
GTAACGAGAGCATCGCCTACTTCCTGCTCCAGCAAGGTGCAGAGCTTGAGATGAAAGACATCCAGGGCTGGACTGCACTCTTTCACTGCACCAGTGCCGGCCACCAGCAGATGGTCAAGTTTCTTCTG
GAGAGTGGAGCCAATGCCAACGTGAGGGAACCTGTATATGGATTCACTCCTTTGATGGAAGCAGCTGCCGCTGGCCATGAGATAATTGTGCAGTATTTTCTGAATCATGGAGTCAAAGTGGACACAAG
AGACCACAGTGGAGCCACAGCCCGGATGCTAGCCAAGCAGTATGGTCACATGAAGATTGTGGCTTTGATGGAAACTCACTCACCTGTACTGCCCAAGAGCCTCTACCGTAGCTCAGAAAACTATGAAG
ACCTGAGCTCTTCAGATGAGTCCTGGCCTGTTCCTCAGCGCCAGAGGCCCTGTCGAAAGAAGGGCCTGAGTATCCACGAGGGGCCTCGCGCCCTGGCCAGGATCACAGCTACTGGACTGGGAGGCAAG
ACTCCGGACAGCTATGAGCAAGTTCCTCCACGGGGCTATGTGACCTTCACCAGCAGTGATGAGAACACCATGGAAGGCGAGGGCCTCTGCTACCGAGATGTCACTTCCCCCATCAATGAACGCGATGT
GGAGAGCAGTAGCAGCAGCAGCCGGGAGGAACCCACTTTCTGTGCCAGTCTTGGGCCTGTGTGGAGGAGCAGCAGCAGTGATGGCCTAGCAAGAGCCCAGGGTCTCAGCAGTGAAGCCTCCATAGAGA
GCAATGAGGATTCTGATCACGCCCGCAAAAGCTCGGTTCGTAAACAAACCAGGACTTATTTGAAGAATAAGAGTCGTCACAACAACAGTGATGGTCACTGGCCTTCTAGCACAGGGACTGCTCGCACT
CCAGGGTCTGAACCCCAAGCTGAGAAGTCCCCTTACTCAGGACCCCAGGATCTTGCCACACTGTTGGAACAGATCGGCTGTCTAAAGTACCTGCAAGTGTTTGAGGAGCAGGATGTAGACCTGCGTAT
CTTTCTGACCCTCACTGAAAGCGACCTGAAGGAAATTGGCATCACGTTGTTTGGGCCCAAAAGGAAAATGACCTCTGCCATTGCCCGATGGCACAGTAGTGCCCGCCCACCTAGTGATGCCCTAGAGC
TGGCCTATGCTGACCGGCTGGAGGCGGAGATGCAGGAGCTTGCCATCCAGCTGCACAAATGCTGTGAGGAGGCAGAGGCTCTGCGTGGCCAAGTCTCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAG
AGCTGCCTCCTGGAGCAGGATAGTGCCCGAAAGGACATCCATGCCCAGCTGCAGGAGGCCCAAACCCTGGCCCAGGATGCTGCTCTTGTCCTAGACCAGCTGCGGGCCTGTCAAGCTGAGTTGTCAGC
TCGATTGAAGCAGCACCACTCCCCCAGCGAAGCTACCCAAAACCCACCCTTTCTCCCAGCAGATTCCAAAGGCTGGCCTATTCCCCTGCAGGCCTTGAGCCTCCCTGAGTTGTCAGGAGCCCTGGAAG
ACCGTGTCCATGAGATGGGCATTATGCTCCGTAACGCAGAGCCTGGAGAAACTACAGATGCTGAATGGGAAGAAATGGAGGGAACCATAGCCAGGAGGGACGATTCTGACGTTGGGTGACGAATCCAC
CCTGAAGTTATGTGCCACGCAAGACAGGGCAGTGAGCAGATGGCTGCGGCAGCCCAGGGAATAGAAGACCAGCCCAGGGAGCAGCTTGTGGACAGGAGGACAGGACTTCAGTCCTCACTAGGGCAGCT
TGGGCCAGCCCTGAGACAGGATGAAGGGCCTAGCACCCAGATTCTGGTGGAGAGGCCCATGCTGGTAGGCAGAGGCAGCTTTGGCTCAGACCAGGCAGGGCCGTATGGAGAGGCTAAGTCCTGCACAT
GTAGGGGCCACACTGAAGTCTGATTTTACAGTCGAAGTCTGGGGTGCCTAGAAAATGTACTCTTTGAAAATAAAATTAGACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001414337 ⟹ NP_001401266

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,561 - 11,142,261 (+)	NCBI
mRatBN7.2	10	10,615,107 - 10,635,809 (+)	NCBI

RefSeq Acc Id:

XM_006245788 ⟹ XP_006245850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,615,050 - 10,635,815 (+)	NCBI
Rnor_6.0	10	10,808,780 - 10,829,507 (+)	NCBI
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI

Sequence:

show sequence

CCGGGGTGGGCCGGGCGCAGGGCTGTTGGCCGGTGAGGGAGCGTGCAGCTGCTGCTGGAGGGTGGCGCGGGAACCTGAGGCCTTGCAGCCATGTCTGAGCTCAGCGATGAAGCCAGCGAGCCGGAGCT
TCTGAACCGCAGCTTGTCCATGTGGCATGGACTTGGTGCACAGGTCAGCAGAGAGGAGCTGGATGTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCAGTATGAGGTGGTGAAGGAGTGTGTGC
AGCGGAGAGAGTTAGATTTGAATAAGAAGAATGGTGGTGGCTGGACTCCGCTGATGTATGCCTCCTACATTGGACACGATACCATTGTTCACTTGCTGCTCGAGGCAGGTGTGAGTGTGAATGTGCCA
ACCCCAGAAGGACAGACTCCACTGATGCTGGCCTCCAGCTGTGGTAACGAGAGCATCGCCTACTTCCTGCTCCAGCAAGGTGCAGAGCTTGAGATGAAAGACATCCAGGGCTGGACTGCACTCTTTCA
CTGCACCAGTGCCGGCCACCAGCAGATGGTCAAGTTTCTTCTGGAGAGTGGAGCCAATGCCAACGTGAGGGAACCTGTATATGGATTCACTCCTTTGATGGAAGCAGCTGCCGCTGGCCATGAGATAA
TTGTGCAGTATTTTCTGAATCATGGAGTCAAAGTGGACACAAGAGACCACAGTGGAGCCACAGCCCGGATGCTAGCCAAGCAGTATGGTCACATGAAGATTGTGGCTTTGATGGAAACTCACTCACCT
GTACTGCCCAAGAGCCTCTACCGTAGCTCAGAAAACTATGAAGACCTGAGCTCTTCAGATGAGTCCTGGCCTGTTCCTCAGCGCCAGAGGCCCTGTCGAAAGAAGGGCCTGAGTATCCACGAGGGGCC
TCGCGCCCTGGCCAGGATCACAGCTACTGGACTGGGAGGCAAGACTCCGGACAGCTATGAGCAAGTTCCTCCACGGGGCTATGTGACCTTCACCAGCAGTGATGAGAACACCATGGAAGGCGAGGGCC
TCTGCTACCGAGATGTCACTTCCCCCATCAATGAACGCGATGTGGAGAGCAGTAGCAGCAGCAGCCGGGAGGAACCCACTTTCTGTGCCAGTCTTGGGCCTGTGTGGAGGAGCAGCAGCAGTGATGGC
CTAGCAAGAGCCCAGGGTCTCAGCAGTGAAGCCTCCATAGAGAGCAATGAGGATTCTGATCACGCCCGCAAAAGCTCGGTTCGTAAACAAACCAGGACTTATTTGAAGAATAAGAGTCGTCACAACAA
CAGTGATGGTCACTGGCCTTCTAGCACAGGGACTGCTCGCACTCCAGGGTCTGAACCCCAAGCTGAGAAGTCCCCTTACTCAGGACCCCAGGATCTTGCCACACTGTTGGAACAGATCGGCTGTCTAA
AGTACCTGCAAGTGTTTGAGGAGCAGGATGTAGACCTGCGTATCTTTCTGACCCTCACTGAAAGCGACCTGAAGGAAATTGGCATCACGTTGTTTGGGCCCAAAAGGAAAATGACCTCTGCCATTGCC
CGATGGCACAGTAGTGCCCGCCCACCTAGTGATGCCCTAGAGCTGGCCTATGCTGACCGGCTGGAGGCGGAGATGCAGGAGCTTGCCATCCAGCTGCACAAATGCTGTGAGGAGGCAGAGGCTCTGCG
TGGCCAAGTCTCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAGAGCTGCCTCCTGGAGCAGGATAGTGCCCGAAAGGACATCCATGCCCAGCTGCAGGAGGCCCAAACCCTGGCCCAGGATGCTGCTC
TTGTCCTAGACCAGCTGCGGGCCTGTCAAGCTGAGTTGTCAGCTCGATTGAAGCAGCACCACTCCCCCAGCGAAGCTACCCAAAACCCACCCTTTCTCCCAGCAGATTCCAAAGGCTGGCCTATTCCC
CTGCAGGCCTTGAGCCTCCCTGAGTTGTCAGGAGCCCTGGAAGACCGTGTCCATGAGATGGGCATTATGCTCCGTAACGCAGAGCCTGGAGAAACTACAGATGCTGAATGGGAAGAAATGGAGGGAAC
CATAGCCAGGAGGGACGGTGAGAGTATCCACTGCGTGCCCATGAGTGCCTTGGACCACTTGACCTTCCTGTCCCTTCTTACCAGGTGCTCTCTCCCTCTCTCTTAAACAAATTTATTCAGATTCTGAC
GTTGGGTGACGAATCCACCCTGAAGTTATGTGCCACGCAAGACAGGGCAGTGAGCAGATGGCTGCGGCAGCCCAGGGAATAGAAGACCAGCCCAGGGAGCAGCTTGTGGACAGGAGGACAGGACTTCA
GTCCTCACTAGGGCAGCTTGGGCCAGCCCTGAGACAGGATGAAGGGCCTAGCACCCAGATTCTGGTGGAGAGGCCCATGCTGGTAGGCAGAGGCAGCTTTGGCTCAGACCAGGCAGGGCCGTATGGAG
AGGCTAAGTCCTGCACATGTAGGGGCCACACTGAAGTCTGATTTTACAGTCGAAGTCTGGGGTGCCTAGAAAATGTACTCTTTGAAAATAAAATTAGACGCAAGTTGGTGGGAGCTCA

hide sequence

RefSeq Acc Id:

XM_006245790 ⟹ XP_006245852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,124,728 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,618,276 - 10,635,815 (+)	NCBI
Rnor_6.0	10	10,812,018 - 10,829,507 (+)	NCBI
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI

Sequence:

show sequence

GGTCAGCAGAGAGGAGCTGGATGTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCAGTATGAGGTGGTGAAGGAGTGTGTGCAGCGTCTGTAACCACAGCCCATGGAATGCTTCCCACATCATT
TTACCCAGTCTAGAAAATTCCTCAGACCTGTGCAAAGGAGAGAGTTAGATTTGAATAAGAAGAATGGTGGTGGCTGGACTCCGCTGATGTATGCCTCCTACATTGGACACGATACCATTGTTCACTTG
CTGCTCGAGGCAGGTGTGAGTGTGAATGTGCCAACCCCAGAAGGACAGACTCCACTGATGCTGGCCTCCAGCTGTGGTAACGAGAGCATCGCCTACTTCCTGCTCCAGCAAGGTGCAGAGCTTGAGAT
GAAAGACATCCAGGGCTGGACTGCACTCTTTCACTGCACCAGTGCCGGCCACCAGCAGATGGTCAAGTTTCTTCTGGAGAGTGGAGCCAATGCCAACGTGAGGGAACCTGTATATGGATTCACTCCTT
TGATGGAAGCAGCTGCCGCTGGCCATGAGATAATTGTGCAGTATTTTCTGAATCATGGAGTCAAAGTGGACACAAGAGACCACAGTGGAGCCACAGCCCGGATGCTAGCCAAGCAGTATGGTCACATG
AAGATTGTGGCTTTGATGGAAACTCACTCACCTGTACTGCCCAAGAGCCTCTACCGTAGCTCAGAAAACTATGAAGACCTGAGCTCTTCAGATGAGTCCTGGCCTGTTCCTCAGCGCCAGAGGCCCTG
TCGAAAGAAGGGCCTGAGTATCCACGAGGGGCCTCGCGCCCTGGCCAGGATCACAGCTACTGGACTGGGAGGCAAGACTCCGGACAGCTATGAGCAAGTTCCTCCACGGGGCTATGTGACCTTCACCA
GCAGTGATGAGAACACCATGGAAGGCGAGGGCCTCTGCTACCGAGATGTCACTTCCCCCATCAATGAACGCGATGTGGAGAGCAGTAGCAGCAGCAGCCGGGAGGAACCCACTTTCTGTGCCAGTCTT
GGGCCTGTGTGGAGGAGCAGCAGCAGTGATGGCCTAGCAAGAGCCCAGGGTCTCAGCAGTGAAGCCTCCATAGAGAGCAATGAGGATTCTGATCACGCCCGCAAAAGCTCGGTTCGTAAACAAACCAG
GACTTATTTGAAGAATAAGAGTCGTCACAACAACAGTGATGGTCACTGGCCTTCTAGCACAGGGACTGCTCGCACTCCAGGGTCTGAACCCCAAGCTGAGAAGTCCCCTTACTCAGGACCCCAGGATC
TTGCCACACTGTTGGAACAGATCGGCTGTCTAAAGTACCTGCAAGTGTTTGAGGAGCAGGATGTAGACCTGCGTATCTTTCTGACCCTCACTGAAAGCGACCTGAAGGAAATTGGCATCACGTTGTTT
GGGCCCAAAAGGAAAATGACCTCTGCCATTGCCCGATGGCACAGTAGTGCCCGCCCACCTAGTGATGCCCTAGAGCTGGCCTATGCTGACCGGCTGGAGGCGGAGATGCAGGAGCTTGCCATCCAGCT
GCACAAATGCTGTGAGGAGGCAGAGGCTCTGCGTGGCCAAGTCTCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAGAGCTGCCTCCTGGAGCAGGATAGTGCCCGAAAGGACATCCATGCCCAGCTGC
AGGAGGCCCAAACCCTGGCCCAGGATGCTGCTCTTGTCCTAGACCAGCTGCGGGCCTGTCAAGCTGAGTTGTCAGCTCGATTGAAGCAGCACCACTCCCCCAGCGAAGCTACCCAAAACCCACCCTTT
CTCCCAGCAGATTCCAAAGGCTGGCCTATTCCCCTGCAGGCCTTGAGCCTCCCTGAGTTGTCAGGAGCCCTGGAAGACCGTGTCCATGAGATGGGCATTATGCTCCGTAACGCAGAGCCTGGAGAAAC
TACAGATGCTGAATGGGAAGAAATGGAGGGAACCATAGCCAGGAGGGACGGTGAGAGTATCCACTGCGTGCCCATGAGTGCCTTGGACCACTTGACCTTCCTGTCCCTTCTTACCAGGTGCTCTCTCC
CTCTCTCTTAAACAAATTTATTCAGATTCTGACGTTGGGTGACGAATCCACCCTGAAGTTATGTGCCACGCAAGACAGGGCAGTGAGCAGATGGCTGCGGCAGCCCAGGGAATAGAAGACCAGCCCAG
GGAGCAGCTTGTGGACAGGAGGACAGGACTTCAGTCCTCACTAGGGCAGCTTGGGCCAGCCCTGAGACAGGATGAAGGGCCTAGCACCCAGATTCTGGTGGAGAGGCCCATGCTGGTAGGCAGAGGCA
GCTTTGGCTCAGACCAGGCAGGGCCGTATGGAGAGGCTAAGTCCTGCACATGTAGGGGCCACACTGAAGTCTGATTTTACAGTCGAAGTCTGGGGTGCCTAGAAAATGTACTCTTTGAAAATAAAATT
AGACGCAAGTTGGTGGGAGCTCA

hide sequence

RefSeq Acc Id:

XM_008767484 ⟹ XP_008765706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,124,727 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,618,276 - 10,635,815 (+)	NCBI
Rnor_6.0	10	10,812,018 - 10,829,507 (+)	NCBI

Sequence:

show sequence

GGTCAGCAGAGAGGAGCTGGATGTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCAGTAT
GAGGTGGTGAAGGAGTGTGTGCAGCGCAAGGTGCAGAGCTTGAGATGAAAGACATCCAGGGCTGGACTGCACTCTTTCACTGCACCAGTGCCGGCCACCAGCAGATGGTCAAGTTTCTTCTGGAGAGT
GGAGCCAATGCCAACGTGAGGGAACCTGTATATGGATTCACTCCTTTGATGGAAGCAGCTGCCGCTGGCCATGAGATAATTGTGCAGTATTTTCTGAATCATGGAGTCAAAGTGGACACAAGAGACCA
CAGTGGAGCCACAGCCCGGATGCTAGCCAAGCAGTATGGTCACATGAAGATTGTGGCTTTGATGGAAACTCACTCACCTGTACTGCCCAAGAGCCTCTACCGTAGCTCAGAAAACTATGAAGACCTGA
GCTCTTCAGATGAGTCCTGGCCTGTTCCTCAGCGCCAGAGGCCCTGTCGAAAGAAGGGCCTGAGTATCCACGAGGGGCCTCGCGCCCTGGCCAGGATCACAGCTACTGGACTGGGAGGCAAGACTCCG
GACAGCTATGAGCAAGTTCCTCCACGGGGCTATGTGACCTTCACCAGCAGTGATGAGAACACCATGGAAGGCGAGGGCCTCTGCTACCGAGATGTCACTTCCCCCATCAATGAACGCGATGTGGAGAG
CAGTAGCAGCAGCAGCCGGGAGGAACCCACTTTCTGTGCCAGTCTTGGGCCTGTGTGGAGGAGCAGCAGCAGTGATGGCCTAGCAAGAGCCCAGGGTCTCAGCAGTGAAGCCTCCATAGAGAGCAATG
AGGATTCTGATCACGCCCGCAAAAGCTCGGTTCGTAAACAAACCAGGACTTATTTGAAGAATAAGAGTCGTCACAACAACAGTGATGGTCACTGGCCTTCTAGCACAGGGACTGCTCGCACTCCAGGG
TCTGAACCCCAAGCTGAGAAGTCCCCTTACTCAGGACCCCAGGATCTTGCCACACTGTTGGAACAGATCGGCTGTCTAAAGTACCTGCAAGTGTTTGAGGAGCAGGATGTAGACCTGCGTATCTTTCT
GACCCTCACTGAAAGCGACCTGAAGGAAATTGGCATCACGTTGTTTGGGCCCAAAAGGAAAATGACCTCTGCCATTGCCCGATGGCACAGTAGTGCCCGCCCACCTAGTGATGCCCTAGAGCTGGCCT
ATGCTGACCGGCTGGAGGCGGAGATGCAGGAGCTTGCCATCCAGCTGCACAAATGCTGTGAGGAGGCAGAGGCTCTGCGTGGCCAAGTCTCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAGAGCTGC
CTCCTGGAGCAGGATAGTGCCCGAAAGGACATCCATGCCCAGCTGCAGGAGGCCCAAACCCTGGCCCAGGATGCTGCTCTTGTCCTAGACCAGCTGCGGGCCTGTCAAGCTGAGTTGTCAGCTCGATT
GAAGCAGCACCACTCCCCCAGCGAAGCTACCCAAAACCCACCCTTTCTCCCAGCAGATTCCAAAGGCTGGCCTATTCCCCTGCAGGCCTTGAGCCTCCCTGAGTTGTCAGGAGCCCTGGAAGACCGTG
TCCATGAGATGGGCATTATGCTCCGTAACGCAGAGCCTGGAGAAACTACAGATGCTGAATGGGAAGAAATGGAGGGAACCATAGCCAGGAGGGACGGTGAGAGTATCCACTGCGTGCCCATGAGTGCC
TTGGACCACTTGACCTTCCTGTCCCTTCTTACCAGGTGCTCTCTCCCTCTCTCTTAAACAAATTTATTCAGATTCTGACGTTGGGTGACGAATCCACCCTGAAGTTATGTGCCACGCAAGACAGGGCA
GTGAGCAGATGGCTGCGGCAGCCCAGGGAATAGAAGACCAGCCCAGGGAGCAGCTTGTGGACAGGAGGACAGGACTTCAGTCCTCACTAGGGCAGCTTGGGCCAGCCCTGAGACAGGATGAAGGGCCT
AGCACCCAGATTCTGGTGGAGAGGCCCATGCTGGTAGGCAGAGGCAGCTTTGGCTCAGACCAGGCAGGGCCGTATGGAGAGGCTAAGTCCTGCACATGTAGGGGCCACACTGAAGTCTGATTTTACAG
TCGAAGTCTGGGGTGCCTAGAAAATGTACTCTTTGAAAATAAAATTAGACGCAAGTTGGTGGGAGCTCA

hide sequence

RefSeq Acc Id:

XM_039085842 ⟹ XP_038941770

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,569 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,614,953 - 10,635,815 (+)	NCBI

RefSeq Acc Id:

XM_039085843 ⟹ XP_038941771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,127,593 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,621,226 - 10,635,815 (+)	NCBI

RefSeq Acc Id:

XM_063268896 ⟹ XP_063124966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,142,252 (+)	NCBI

RefSeq Acc Id:

XM_063268897 ⟹ XP_063124967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,141,928 (+)	NCBI

RefSeq Acc Id:

XR_005489786

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,141,928 (+)	NCBI
mRatBN7.2	10	10,615,050 - 10,635,815 (+)	NCBI

RefSeq Acc Id:

XR_005489787

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,141,928 (+)	NCBI
mRatBN7.2	10	10,615,050 - 10,635,487 (+)	NCBI

RefSeq Acc Id:

XR_005489788

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,138,033 (+)	NCBI
mRatBN7.2	10	10,615,050 - 10,634,969 (+)	NCBI


Protein RefSeqs	NP_001009676	(Get FASTA)	NCBI Sequence Viewer
	NP_001401266	(Get FASTA)	NCBI Sequence Viewer
	XP_006245850	(Get FASTA)	NCBI Sequence Viewer
	XP_006245852	(Get FASTA)	NCBI Sequence Viewer
	XP_008765706	(Get FASTA)	NCBI Sequence Viewer
	XP_038941770	(Get FASTA)	NCBI Sequence Viewer
	XP_038941771	(Get FASTA)	NCBI Sequence Viewer
	XP_063124966	(Get FASTA)	NCBI Sequence Viewer
	XP_063124967	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87062	(Get FASTA)	NCBI Sequence Viewer
	EDL96274	(Get FASTA)	NCBI Sequence Viewer
	EDL96275	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004298
	ENSRNOP00000004298.4
	ENSRNOP00000109824
GenBank Protein	Q5M9H0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001009676 ⟸ NM_001009676
- Peptide Label:	isoform 1
- UniProtKB:	Q5M9H0 (UniProtKB/Swiss-Prot), A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSELSDEASEPELLNRSLSMWHGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAEL EMKDIQGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLPKSLYRSSENYEDLSSSDESWPVPQRQR PCRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPPRGYVTFTSSDENTMEGEGLCYRDVTSPINERDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQ TRTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAI QLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQTLAQDAALVLDQLRACQAELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQALSLPELSGALEDRVHEMGIMLRNAEPG ETTDAEWEEMEGTIARRDDSDVG hide sequence

RefSeq Acc Id:	XP_006245850 ⟸ XM_006245788
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSELSDEASEPELLNRSLSMWHGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNK KNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHG VKVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLPKSLYRSSENYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPPRGYVTFTSSDENTMEGEGLCYRDVTSP INERDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQTRTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQ DVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQTLAQDAALVLDQLRAC QAELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQALSLPELSGALEDRVHEMGIMLRNAEPGETTDAEWEEMEGTIARRDGESIHCVPMSALDHLTFLSLLTRCSLPLS hide sequence

RefSeq Acc Id:	XP_006245852 ⟸ XM_006245790
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MECFPHHFTQSRKFLRPVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLESGANANVRE PVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLPKSLYRSSENYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPP RGYVTFTSSDENTMEGEGLCYRDVTSPINERDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQTRTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKS PYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSAR KDIHAQLQEAQTLAQDAALVLDQLRACQAELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQALSLPELSGALEDRVHEMGIMLRNAEPGETTDAEWEEMEGTIARRDGESIHCVPMSALDHLTFLS LLTRCSLPLS hide sequence

RefSeq Acc Id:

XP_008765706 ⟸ XM_008767484

- Peptide Label:

isoform X6

- Sequence:

show sequence

MKDIQGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGV
KVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLPKSLYRSSENYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPPRGYVTFTSSDENTMEGEGLCYRDVTSPI
NERDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQTRTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQD
VDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQTLAQDAALVLDQLRACQ
AELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQALSLPELSGALEDRVHEMGIMLRNAEPGETTDAEWEEMEGTIARRDGESIHCVPMSALDHLTFLSLLTRCSLPLS

hide sequence

Ensembl Acc Id:

ENSRNOP00000004298 ⟸ ENSRNOT00000004298

Protein Domains

SAM

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M9H0-F1-model_v2	AlphaFold	Q5M9H0	1-663	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13696968

Promoter ID:

EPDNEW_R7493

Type:

multiple initiation site

Name:

Anks3_1

Description:

ankyrin repeat and sterile alpha motif domain containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	10,808,801 - 10,808,861	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-26050	BioCyc
Ensembl Genes	ENSRNOG00000003186	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000004298	ENTREZGENE
	ENSRNOT00000004298.7	UniProtKB/Swiss-Prot
	ENSRNOT00000135438	ENTREZGENE
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
	1.25.40.20	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7131099	IMAGE-MGC_LOAD
InterPro	ANKS3_SAM	UniProtKB/Swiss-Prot
	Ankyrin_rpt	UniProtKB/Swiss-Prot
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:302937	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94228	IMAGE-MGC_LOAD
NCBI Gene	302937	ENTREZGENE
PANTHER	ANKYRIN REPEAT AND SAM DOMAIN-CONTAINING PROTEIN 3	UniProtKB/Swiss-Prot
	SI:CH211-189E2.2	UniProtKB/Swiss-Prot
Pfam	Ank_2	UniProtKB/Swiss-Prot
	Ank_4	UniProtKB/Swiss-Prot
	SAM_1	UniProtKB/Swiss-Prot
PhenoGen	Anks3	PhenoGen
PRINTS	ANKYRIN	UniProtKB/Swiss-Prot
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot
	ANK_REPEAT	UniProtKB/Swiss-Prot
	SAM_DOMAIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003186	RatGTEx
SMART	ANK	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
	SSF48403	UniProtKB/Swiss-Prot
UniProt	A0A0G2JX10	ENTREZGENE, UniProtKB/TrEMBL
	A6K4Q3	ENTREZGENE, UniProtKB/TrEMBL
	ANKS3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Anks3	ankyrin repeat and sterile alpha motif domain containing 3	RGD1305833	similar to RIKEN cDNA 2700067D09	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1305833	similar to RIKEN cDNA 2700067D09	RGD1305833_predicted	similar to RIKEN cDNA 2700067D09 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1305833_predicted	similar to RIKEN cDNA 2700067D09 (predicted)	LOC302937_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC302937_predicted	similar to RIKEN cDNA 2700067D09 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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