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Gene: Anks3 (ankyrin repeat and sterile alpha motif domain containing 3) Rattus norvegicus

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Symbol:

Anks3

Name:

ankyrin repeat and sterile alpha motif domain containing 3

RGD ID:

1305833

Description:

Predicted to be located in cytoplasm. Predicted to be active in cilium. Orthologous to human ANKS3 (ankyrin repeat and sterile alpha motif domain containing 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ankyrin repeat and SAM domain-containing protein 3; LOC302937; MGC94228; RGD1305833; similar to RIKEN cDNA 2700067D09

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,121,504 - 11,142,261 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	11,121,553 - 11,142,491 (+)	Ensembl				GRCr8
mRatBN7.2	10	10,614,953 - 10,635,815 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,615,047 - 10,635,806 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	15,323,559 - 15,344,216 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,812,376 - 14,833,033 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,481,506 - 10,502,164 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,808,780 - 10,829,507 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,808,823 - 10,831,535 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	10,732,109 - 10,752,778 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	9,579,341 - 9,600,010 (+)	NCBI		Celera
RGSC_v3.1	10	10,732,108 - 10,752,776 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dwarfism (ISO)

Hydrops Fetalis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

azoxystrobin (EXP)

beta-lapachone (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

Butylbenzyl phthalate (EXP)

CGP 52608 (ISO)

chlorpyrifos (EXP)

choline (ISO)

coumarin (ISO)

Dibutyl phosphate (ISO)

folic acid (ISO)

gentamycin (EXP)

glyphosate (EXP)

imidacloprid (EXP)

L-methionine (ISO)

leflunomide (ISO)

methimazole (EXP)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cilium (IBA,IEA,ISO)

cytoplasm (IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:26188091	PMID:26327442	PMID:29395339

Genomics

Comparative Map Data

Anks3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,121,504 - 11,142,261 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	11,121,553 - 11,142,491 (+)	Ensembl				GRCr8
mRatBN7.2	10	10,614,953 - 10,635,815 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,615,047 - 10,635,806 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	15,323,559 - 15,344,216 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,812,376 - 14,833,033 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,481,506 - 10,502,164 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,808,780 - 10,829,507 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,808,823 - 10,831,535 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	10,732,109 - 10,752,778 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	9,579,341 - 9,600,010 (+)	NCBI		Celera
RGSC_v3.1	10	10,732,108 - 10,752,776 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

ANKS3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	4,696,511 - 4,734,271 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	4,696,510 - 4,734,378 (-)	Ensembl			hg38	GRCh38
GRCh37	16	4,746,512 - 4,784,272 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	4,686,514 - 4,724,164 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	4,955,291 - 4,992,944 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	4,713,030 - 4,750,906 (-)	NCBI		HuRef
CHM1_1	16	4,747,292 - 4,785,140 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	4,725,963 - 4,763,728 (-)	NCBI		T2T-CHM13v2.0

Anks3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	4,759,290 - 4,783,362 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	4,759,300 - 4,782,069 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	4,941,415 - 4,965,537 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	4,941,436 - 4,964,205 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	4,941,420 - 4,964,330 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	4,856,671 - 4,879,505 (-)	NCBI		MGSCv36	mm8
Celera	16	5,572,755 - 5,595,570 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.48	NCBI

Anks3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	12,752,008 - 12,775,081 (+)	Ensembl
ChiLan1.0	NW_004955442	12,752,468 - 12,775,081 (+)	NCBI	ChiLan1.0	ChiLan1.0

ANKS3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	5,225,222 - 5,263,889 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	9,015,351 - 9,053,705 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	3,621,185 - 3,659,570 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	4,788,093 - 4,822,178 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	4,788,093 - 4,820,760 (-)	Ensembl			panPan2	panpan1.1

ANKS3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	36,678,916 - 36,711,096 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	36,669,590 - 36,710,807 (+)	Ensembl			canFam3	CanFam3.1
ROS_Cfam_1.0	6	36,882,187 - 36,914,161 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	36,882,347 - 36,914,158 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	36,676,333 - 36,708,012 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	36,569,127 - 36,600,861 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	36,971,269 - 37,003,540 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Anks3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	106,852,793 - 106,878,146 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	4,695,401 - 4,722,924 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	4,698,234 - 4,723,131 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANKS3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	37,650,256 - 37,689,500 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	37,664,182 - 37,689,502 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	38,725,118 - 38,748,113 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANKS3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	4,378,318 - 4,413,266 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	4,375,517 - 4,413,199 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	26,248,878 - 26,286,986 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Anks3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624824	2,478,608 - 2,505,257 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624824	2,478,608 - 2,507,287 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Anks3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	16,943,436 - 16,964,671 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Anks3
223 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	247
Count of miRNA genes:	149
Interacting mature miRNAs:	165
Transcripts:	ENSRNOT00000004298
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

BM384744

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	11,138,955 - 11,139,140 (+)	Marker Load Pipeline
mRatBN7.2	10	10,632,503 - 10,632,688 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	10,826,196 - 10,826,380	NCBI	Rnor6.0
Rnor_5.0	10	9,593,126 - 9,593,310	UniSTS	Rnor5.0
RGSC_v3.4	10	10,749,482 - 10,749,666	UniSTS	RGSC3.4
Celera	10	9,596,714 - 9,596,898	UniSTS
RH 3.4 Map	10	100.23	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001009676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004298 ⟹ ENSRNOP00000004298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	11,121,560 - 11,142,250 (+)	Ensembl
mRatBN7.2 Ensembl	10	10,615,093 - 10,635,806 (+)	Ensembl
Rnor_6.0 Ensembl	10	10,808,823 - 10,829,490 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077347 ⟹ ENSRNOP00000070091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	11,121,559 - 11,142,255 (+)	Ensembl
mRatBN7.2 Ensembl	10	10,615,047 - 10,635,800 (+)	Ensembl
Rnor_6.0 Ensembl	10	10,811,937 - 10,831,535 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135438 ⟹ ENSRNOP00000109824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	11,121,553 - 11,142,491 (+)	Ensembl

RefSeq Acc Id:

NM_001009676 ⟹ NP_001009676

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,561 - 11,142,261 (+)	NCBI
mRatBN7.2	10	10,615,107 - 10,635,809 (+)	NCBI
Rnor_6.0	10	10,808,823 - 10,829,492 (+)	NCBI
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI
RGSC_v3.4	10	10,732,109 - 10,752,778 (+)	RGD
Celera	10	9,579,341 - 9,600,010 (+)	RGD

Sequence:

show sequence

TGCAGCTGCTGCTGGAGGGTGGCGCGGGAACCTGAGGCCTTGCAGCCATGTCTGAGCTCAGCGA
TGAAGCCAGCGAGCCGGAGCTTCTGAACCGCAGCTTGTCCATGTGGCATGGACTTGGTGCACAG
GTCAGCAGAGAGGAGCTGGATGTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCAGTATG
AGGTGGTGAAGGAGTGTGTGCAGCGGAGAGAGTTAGATTTGAATAAGAAGAATGGTGGTGGCTG
GACTCCGCTGATGTATGCCTCCTACATTGGACACGATACCATTGTTCACTTGCTGCTCGAGGCA
GGTGTGAGTGTGAATGTGCCAACCCCAGAAGGACAGACTCCACTGATGCTGGCCTCCAGCTGTG
GTAACGAGAGCATCGCCTACTTCCTGCTCCAGCAAGGTGCAGAGCTTGAGATGAAAGACATCCA
GGGCTGGACTGCACTCTTTCACTGCACCAGTGCCGGCCACCAGCAGATGGTCAAGTTTCTTCTG
GAGAGTGGAGCCAATGCCAACGTGAGGGAACCTGTATATGGATTCACTCCTTTGATGGAAGCAG
CTGCCGCTGGCCATGAGATAATTGTGCAGTATTTTCTGAATCATGGAGTCAAAGTGGACACAAG
AGACCACAGTGGAGCCACAGCCCGGATGCTAGCCAAGCAGTATGGTCACATGAAGATTGTGGCT
TTGATGGAAACTCACTCACCTGTACTGCCCAAGAGCCTCTACCGTAGCTCAGAAAACTATGAAG
ACCTGAGCTCTTCAGATGAGTCCTGGCCTGTTCCTCAGCGCCAGAGGCCCTGTCGAAAGAAGGG
CCTGAGTATCCACGAGGGGCCTCGCGCCCTGGCCAGGATCACAGCTACTGGACTGGGAGGCAAG
ACTCCGGACAGCTATGAGCAAGTTCCTCCACGGGGCTATGTGACCTTCACCAGCAGTGATGAGA
ACACCATGGAAGGCGAGGGCCTCTGCTACCGAGATGTCACTTCCCCCATCAATGAACGCGATGT
GGAGAGCAGTAGCAGCAGCAGCCGGGAGGAACCCACTTTCTGTGCCAGTCTTGGGCCTGTGTGG
AGGAGCAGCAGCAGTGATGGCCTAGCAAGAGCCCAGGGTCTCAGCAGTGAAGCCTCCATAGAGA
GCAATGAGGATTCTGATCACGCCCGCAAAAGCTCGGTTCGTAAACAAACCAGGACTTATTTGAA
GAATAAGAGTCGTCACAACAACAGTGATGGTCACTGGCCTTCTAGCACAGGGACTGCTCGCACT
CCAGGGTCTGAACCCCAAGCTGAGAAGTCCCCTTACTCAGGACCCCAGGATCTTGCCACACTGT
TGGAACAGATCGGCTGTCTAAAGTACCTGCAAGTGTTTGAGGAGCAGGATGTAGACCTGCGTAT
CTTTCTGACCCTCACTGAAAGCGACCTGAAGGAAATTGGCATCACGTTGTTTGGGCCCAAAAGG
AAAATGACCTCTGCCATTGCCCGATGGCACAGTAGTGCCCGCCCACCTAGTGATGCCCTAGAGC
TGGCCTATGCTGACCGGCTGGAGGCGGAGATGCAGGAGCTTGCCATCCAGCTGCACAAATGCTG
TGAGGAGGCAGAGGCTCTGCGTGGCCAAGTCTCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAG
AGCTGCCTCCTGGAGCAGGATAGTGCCCGAAAGGACATCCATGCCCAGCTGCAGGAGGCCCAAA
CCCTGGCCCAGGATGCTGCTCTTGTCCTAGACCAGCTGCGGGCCTGTCAAGCTGAGTTGTCAGC
TCGATTGAAGCAGCACCACTCCCCCAGCGAAGCTACCCAAAACCCACCCTTTCTCCCAGCAGAT
TCCAAAGGCTGGCCTATTCCCCTGCAGGCCTTGAGCCTCCCTGAGTTGTCAGGAGCCCTGGAAG
ACCGTGTCCATGAGATGGGCATTATGCTCCGTAACGCAGAGCCTGGAGAAACTACAGATGCTGA
ATGGGAAGAAATGGAGGGAACCATAGCCAGGAGGGACGATTCTGACGTTGGGTGACGAATCCAC
CCTGAAGTTATGTGCCACGCAAGACAGGGCAGTGAGCAGATGGCTGCGGCAGCCCAGGGAATAG
AAGACCAGCCCAGGGAGCAGCTTGTGGACAGGAGGACAGGACTTCAGTCCTCACTAGGGCAGCT
TGGGCCAGCCCTGAGACAGGATGAAGGGCCTAGCACCCAGATTCTGGTGGAGAGGCCCATGCTG
GTAGGCAGAGGCAGCTTTGGCTCAGACCAGGCAGGGCCGTATGGAGAGGCTAAGTCCTGCACAT
GTAGGGGCCACACTGAAGTCTGATTTTACAGTCGAAGTCTGGGGTGCCTAGAAAATGTACTCTT
TGAAAATAAAATTAGACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001414337 ⟹ NP_001401266

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,561 - 11,142,261 (+)	NCBI
mRatBN7.2	10	10,615,107 - 10,635,809 (+)	NCBI

RefSeq Acc Id:

XM_006245788 ⟹ XP_006245850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,615,050 - 10,635,815 (+)	NCBI
Rnor_6.0	10	10,808,780 - 10,829,507 (+)	NCBI
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI

Sequence:

show sequence

CCGGGGTGGGCCGGGCGCAGGGCTGTTGGCCGGTGAGGGAGCGTGCAGCTGCTGCTGGAGGGTG
GCGCGGGAACCTGAGGCCTTGCAGCCATGTCTGAGCTCAGCGATGAAGCCAGCGAGCCGGAGCT
TCTGAACCGCAGCTTGTCCATGTGGCATGGACTTGGTGCACAGGTCAGCAGAGAGGAGCTGGAT
GTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCAGTATGAGGTGGTGAAGGAGTGTGTGC
AGCGGAGAGAGTTAGATTTGAATAAGAAGAATGGTGGTGGCTGGACTCCGCTGATGTATGCCTC
CTACATTGGACACGATACCATTGTTCACTTGCTGCTCGAGGCAGGTGTGAGTGTGAATGTGCCA
ACCCCAGAAGGACAGACTCCACTGATGCTGGCCTCCAGCTGTGGTAACGAGAGCATCGCCTACT
TCCTGCTCCAGCAAGGTGCAGAGCTTGAGATGAAAGACATCCAGGGCTGGACTGCACTCTTTCA
CTGCACCAGTGCCGGCCACCAGCAGATGGTCAAGTTTCTTCTGGAGAGTGGAGCCAATGCCAAC
GTGAGGGAACCTGTATATGGATTCACTCCTTTGATGGAAGCAGCTGCCGCTGGCCATGAGATAA
TTGTGCAGTATTTTCTGAATCATGGAGTCAAAGTGGACACAAGAGACCACAGTGGAGCCACAGC
CCGGATGCTAGCCAAGCAGTATGGTCACATGAAGATTGTGGCTTTGATGGAAACTCACTCACCT
GTACTGCCCAAGAGCCTCTACCGTAGCTCAGAAAACTATGAAGACCTGAGCTCTTCAGATGAGT
CCTGGCCTGTTCCTCAGCGCCAGAGGCCCTGTCGAAAGAAGGGCCTGAGTATCCACGAGGGGCC
TCGCGCCCTGGCCAGGATCACAGCTACTGGACTGGGAGGCAAGACTCCGGACAGCTATGAGCAA
GTTCCTCCACGGGGCTATGTGACCTTCACCAGCAGTGATGAGAACACCATGGAAGGCGAGGGCC
TCTGCTACCGAGATGTCACTTCCCCCATCAATGAACGCGATGTGGAGAGCAGTAGCAGCAGCAG
CCGGGAGGAACCCACTTTCTGTGCCAGTCTTGGGCCTGTGTGGAGGAGCAGCAGCAGTGATGGC
CTAGCAAGAGCCCAGGGTCTCAGCAGTGAAGCCTCCATAGAGAGCAATGAGGATTCTGATCACG
CCCGCAAAAGCTCGGTTCGTAAACAAACCAGGACTTATTTGAAGAATAAGAGTCGTCACAACAA
CAGTGATGGTCACTGGCCTTCTAGCACAGGGACTGCTCGCACTCCAGGGTCTGAACCCCAAGCT
GAGAAGTCCCCTTACTCAGGACCCCAGGATCTTGCCACACTGTTGGAACAGATCGGCTGTCTAA
AGTACCTGCAAGTGTTTGAGGAGCAGGATGTAGACCTGCGTATCTTTCTGACCCTCACTGAAAG
CGACCTGAAGGAAATTGGCATCACGTTGTTTGGGCCCAAAAGGAAAATGACCTCTGCCATTGCC
CGATGGCACAGTAGTGCCCGCCCACCTAGTGATGCCCTAGAGCTGGCCTATGCTGACCGGCTGG
AGGCGGAGATGCAGGAGCTTGCCATCCAGCTGCACAAATGCTGTGAGGAGGCAGAGGCTCTGCG
TGGCCAAGTCTCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAGAGCTGCCTCCTGGAGCAGGAT
AGTGCCCGAAAGGACATCCATGCCCAGCTGCAGGAGGCCCAAACCCTGGCCCAGGATGCTGCTC
TTGTCCTAGACCAGCTGCGGGCCTGTCAAGCTGAGTTGTCAGCTCGATTGAAGCAGCACCACTC
CCCCAGCGAAGCTACCCAAAACCCACCCTTTCTCCCAGCAGATTCCAAAGGCTGGCCTATTCCC
CTGCAGGCCTTGAGCCTCCCTGAGTTGTCAGGAGCCCTGGAAGACCGTGTCCATGAGATGGGCA
TTATGCTCCGTAACGCAGAGCCTGGAGAAACTACAGATGCTGAATGGGAAGAAATGGAGGGAAC
CATAGCCAGGAGGGACGGTGAGAGTATCCACTGCGTGCCCATGAGTGCCTTGGACCACTTGACC
TTCCTGTCCCTTCTTACCAGGTGCTCTCTCCCTCTCTCTTAAACAAATTTATTCAGATTCTGAC
GTTGGGTGACGAATCCACCCTGAAGTTATGTGCCACGCAAGACAGGGCAGTGAGCAGATGGCTG
CGGCAGCCCAGGGAATAGAAGACCAGCCCAGGGAGCAGCTTGTGGACAGGAGGACAGGACTTCA
GTCCTCACTAGGGCAGCTTGGGCCAGCCCTGAGACAGGATGAAGGGCCTAGCACCCAGATTCTG
GTGGAGAGGCCCATGCTGGTAGGCAGAGGCAGCTTTGGCTCAGACCAGGCAGGGCCGTATGGAG
AGGCTAAGTCCTGCACATGTAGGGGCCACACTGAAGTCTGATTTTACAGTCGAAGTCTGGGGTG
CCTAGAAAATGTACTCTTTGAAAATAAAATTAGACGCAAGTTGGTGGGAGCTCA

hide sequence

RefSeq Acc Id:

XM_006245790 ⟹ XP_006245852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,124,728 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,618,276 - 10,635,815 (+)	NCBI
Rnor_6.0	10	10,812,018 - 10,829,507 (+)	NCBI
Rnor_5.0	10	9,575,611 - 9,596,437 (+)	NCBI

Sequence:

show sequence

GGTCAGCAGAGAGGAGCTGGATGTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCAGTAT
GAGGTGGTGAAGGAGTGTGTGCAGCGTCTGTAACCACAGCCCATGGAATGCTTCCCACATCATT
TTACCCAGTCTAGAAAATTCCTCAGACCTGTGCAAAGGAGAGAGTTAGATTTGAATAAGAAGAA
TGGTGGTGGCTGGACTCCGCTGATGTATGCCTCCTACATTGGACACGATACCATTGTTCACTTG
CTGCTCGAGGCAGGTGTGAGTGTGAATGTGCCAACCCCAGAAGGACAGACTCCACTGATGCTGG
CCTCCAGCTGTGGTAACGAGAGCATCGCCTACTTCCTGCTCCAGCAAGGTGCAGAGCTTGAGAT
GAAAGACATCCAGGGCTGGACTGCACTCTTTCACTGCACCAGTGCCGGCCACCAGCAGATGGTC
AAGTTTCTTCTGGAGAGTGGAGCCAATGCCAACGTGAGGGAACCTGTATATGGATTCACTCCTT
TGATGGAAGCAGCTGCCGCTGGCCATGAGATAATTGTGCAGTATTTTCTGAATCATGGAGTCAA
AGTGGACACAAGAGACCACAGTGGAGCCACAGCCCGGATGCTAGCCAAGCAGTATGGTCACATG
AAGATTGTGGCTTTGATGGAAACTCACTCACCTGTACTGCCCAAGAGCCTCTACCGTAGCTCAG
AAAACTATGAAGACCTGAGCTCTTCAGATGAGTCCTGGCCTGTTCCTCAGCGCCAGAGGCCCTG
TCGAAAGAAGGGCCTGAGTATCCACGAGGGGCCTCGCGCCCTGGCCAGGATCACAGCTACTGGA
CTGGGAGGCAAGACTCCGGACAGCTATGAGCAAGTTCCTCCACGGGGCTATGTGACCTTCACCA
GCAGTGATGAGAACACCATGGAAGGCGAGGGCCTCTGCTACCGAGATGTCACTTCCCCCATCAA
TGAACGCGATGTGGAGAGCAGTAGCAGCAGCAGCCGGGAGGAACCCACTTTCTGTGCCAGTCTT
GGGCCTGTGTGGAGGAGCAGCAGCAGTGATGGCCTAGCAAGAGCCCAGGGTCTCAGCAGTGAAG
CCTCCATAGAGAGCAATGAGGATTCTGATCACGCCCGCAAAAGCTCGGTTCGTAAACAAACCAG
GACTTATTTGAAGAATAAGAGTCGTCACAACAACAGTGATGGTCACTGGCCTTCTAGCACAGGG
ACTGCTCGCACTCCAGGGTCTGAACCCCAAGCTGAGAAGTCCCCTTACTCAGGACCCCAGGATC
TTGCCACACTGTTGGAACAGATCGGCTGTCTAAAGTACCTGCAAGTGTTTGAGGAGCAGGATGT
AGACCTGCGTATCTTTCTGACCCTCACTGAAAGCGACCTGAAGGAAATTGGCATCACGTTGTTT
GGGCCCAAAAGGAAAATGACCTCTGCCATTGCCCGATGGCACAGTAGTGCCCGCCCACCTAGTG
ATGCCCTAGAGCTGGCCTATGCTGACCGGCTGGAGGCGGAGATGCAGGAGCTTGCCATCCAGCT
GCACAAATGCTGTGAGGAGGCAGAGGCTCTGCGTGGCCAAGTCTCCCAGGAGCAGGAATTGCGG
GCTGTAGTAGAGAGCTGCCTCCTGGAGCAGGATAGTGCCCGAAAGGACATCCATGCCCAGCTGC
AGGAGGCCCAAACCCTGGCCCAGGATGCTGCTCTTGTCCTAGACCAGCTGCGGGCCTGTCAAGC
TGAGTTGTCAGCTCGATTGAAGCAGCACCACTCCCCCAGCGAAGCTACCCAAAACCCACCCTTT
CTCCCAGCAGATTCCAAAGGCTGGCCTATTCCCCTGCAGGCCTTGAGCCTCCCTGAGTTGTCAG
GAGCCCTGGAAGACCGTGTCCATGAGATGGGCATTATGCTCCGTAACGCAGAGCCTGGAGAAAC
TACAGATGCTGAATGGGAAGAAATGGAGGGAACCATAGCCAGGAGGGACGGTGAGAGTATCCAC
TGCGTGCCCATGAGTGCCTTGGACCACTTGACCTTCCTGTCCCTTCTTACCAGGTGCTCTCTCC
CTCTCTCTTAAACAAATTTATTCAGATTCTGACGTTGGGTGACGAATCCACCCTGAAGTTATGT
GCCACGCAAGACAGGGCAGTGAGCAGATGGCTGCGGCAGCCCAGGGAATAGAAGACCAGCCCAG
GGAGCAGCTTGTGGACAGGAGGACAGGACTTCAGTCCTCACTAGGGCAGCTTGGGCCAGCCCTG
AGACAGGATGAAGGGCCTAGCACCCAGATTCTGGTGGAGAGGCCCATGCTGGTAGGCAGAGGCA
GCTTTGGCTCAGACCAGGCAGGGCCGTATGGAGAGGCTAAGTCCTGCACATGTAGGGGCCACAC
TGAAGTCTGATTTTACAGTCGAAGTCTGGGGTGCCTAGAAAATGTACTCTTTGAAAATAAAATT
AGACGCAAGTTGGTGGGAGCTCA

hide sequence

RefSeq Acc Id:

XM_008767484 ⟹ XP_008765706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,124,727 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,618,276 - 10,635,815 (+)	NCBI
Rnor_6.0	10	10,812,018 - 10,829,507 (+)	NCBI

Sequence:

show sequence

GGTCAGCAGAGAGGAGCTGGATGTCCCCTTGGATCTTCACACAGCTGCCTCCATTGGCCAGTAT
GAGGTGGTGAAGGAGTGTGTGCAGCGCAAGGTGCAGAGCTTGAGATGAAAGACATCCAGGGCTG
GACTGCACTCTTTCACTGCACCAGTGCCGGCCACCAGCAGATGGTCAAGTTTCTTCTGGAGAGT
GGAGCCAATGCCAACGTGAGGGAACCTGTATATGGATTCACTCCTTTGATGGAAGCAGCTGCCG
CTGGCCATGAGATAATTGTGCAGTATTTTCTGAATCATGGAGTCAAAGTGGACACAAGAGACCA
CAGTGGAGCCACAGCCCGGATGCTAGCCAAGCAGTATGGTCACATGAAGATTGTGGCTTTGATG
GAAACTCACTCACCTGTACTGCCCAAGAGCCTCTACCGTAGCTCAGAAAACTATGAAGACCTGA
GCTCTTCAGATGAGTCCTGGCCTGTTCCTCAGCGCCAGAGGCCCTGTCGAAAGAAGGGCCTGAG
TATCCACGAGGGGCCTCGCGCCCTGGCCAGGATCACAGCTACTGGACTGGGAGGCAAGACTCCG
GACAGCTATGAGCAAGTTCCTCCACGGGGCTATGTGACCTTCACCAGCAGTGATGAGAACACCA
TGGAAGGCGAGGGCCTCTGCTACCGAGATGTCACTTCCCCCATCAATGAACGCGATGTGGAGAG
CAGTAGCAGCAGCAGCCGGGAGGAACCCACTTTCTGTGCCAGTCTTGGGCCTGTGTGGAGGAGC
AGCAGCAGTGATGGCCTAGCAAGAGCCCAGGGTCTCAGCAGTGAAGCCTCCATAGAGAGCAATG
AGGATTCTGATCACGCCCGCAAAAGCTCGGTTCGTAAACAAACCAGGACTTATTTGAAGAATAA
GAGTCGTCACAACAACAGTGATGGTCACTGGCCTTCTAGCACAGGGACTGCTCGCACTCCAGGG
TCTGAACCCCAAGCTGAGAAGTCCCCTTACTCAGGACCCCAGGATCTTGCCACACTGTTGGAAC
AGATCGGCTGTCTAAAGTACCTGCAAGTGTTTGAGGAGCAGGATGTAGACCTGCGTATCTTTCT
GACCCTCACTGAAAGCGACCTGAAGGAAATTGGCATCACGTTGTTTGGGCCCAAAAGGAAAATG
ACCTCTGCCATTGCCCGATGGCACAGTAGTGCCCGCCCACCTAGTGATGCCCTAGAGCTGGCCT
ATGCTGACCGGCTGGAGGCGGAGATGCAGGAGCTTGCCATCCAGCTGCACAAATGCTGTGAGGA
GGCAGAGGCTCTGCGTGGCCAAGTCTCCCAGGAGCAGGAATTGCGGGCTGTAGTAGAGAGCTGC
CTCCTGGAGCAGGATAGTGCCCGAAAGGACATCCATGCCCAGCTGCAGGAGGCCCAAACCCTGG
CCCAGGATGCTGCTCTTGTCCTAGACCAGCTGCGGGCCTGTCAAGCTGAGTTGTCAGCTCGATT
GAAGCAGCACCACTCCCCCAGCGAAGCTACCCAAAACCCACCCTTTCTCCCAGCAGATTCCAAA
GGCTGGCCTATTCCCCTGCAGGCCTTGAGCCTCCCTGAGTTGTCAGGAGCCCTGGAAGACCGTG
TCCATGAGATGGGCATTATGCTCCGTAACGCAGAGCCTGGAGAAACTACAGATGCTGAATGGGA
AGAAATGGAGGGAACCATAGCCAGGAGGGACGGTGAGAGTATCCACTGCGTGCCCATGAGTGCC
TTGGACCACTTGACCTTCCTGTCCCTTCTTACCAGGTGCTCTCTCCCTCTCTCTTAAACAAATT
TATTCAGATTCTGACGTTGGGTGACGAATCCACCCTGAAGTTATGTGCCACGCAAGACAGGGCA
GTGAGCAGATGGCTGCGGCAGCCCAGGGAATAGAAGACCAGCCCAGGGAGCAGCTTGTGGACAG
GAGGACAGGACTTCAGTCCTCACTAGGGCAGCTTGGGCCAGCCCTGAGACAGGATGAAGGGCCT
AGCACCCAGATTCTGGTGGAGAGGCCCATGCTGGTAGGCAGAGGCAGCTTTGGCTCAGACCAGG
CAGGGCCGTATGGAGAGGCTAAGTCCTGCACATGTAGGGGCCACACTGAAGTCTGATTTTACAG
TCGAAGTCTGGGGTGCCTAGAAAATGTACTCTTTGAAAATAAAATTAGACGCAAGTTGGTGGGA
GCTCA

hide sequence

RefSeq Acc Id:

XM_039085842 ⟹ XP_038941770

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,569 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,614,953 - 10,635,815 (+)	NCBI

RefSeq Acc Id:

XM_039085843 ⟹ XP_038941771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,127,593 - 11,142,252 (+)	NCBI
mRatBN7.2	10	10,621,226 - 10,635,815 (+)	NCBI

RefSeq Acc Id:

XM_063268896 ⟹ XP_063124966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,142,252 (+)	NCBI

RefSeq Acc Id:

XM_063268897 ⟹ XP_063124967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,141,928 (+)	NCBI

RefSeq Acc Id:

XR_005489786

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,141,928 (+)	NCBI
mRatBN7.2	10	10,615,050 - 10,635,815 (+)	NCBI

RefSeq Acc Id:

XR_005489787

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,141,928 (+)	NCBI
mRatBN7.2	10	10,615,050 - 10,635,487 (+)	NCBI

RefSeq Acc Id:

XR_005489788

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,121,504 - 11,138,033 (+)	NCBI
mRatBN7.2	10	10,615,050 - 10,634,969 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001009676	(Get FASTA)	NCBI Sequence Viewer
	NP_001401266	(Get FASTA)	NCBI Sequence Viewer
	XP_006245850	(Get FASTA)	NCBI Sequence Viewer
	XP_006245852	(Get FASTA)	NCBI Sequence Viewer
	XP_008765706	(Get FASTA)	NCBI Sequence Viewer
	XP_038941770	(Get FASTA)	NCBI Sequence Viewer
	XP_038941771	(Get FASTA)	NCBI Sequence Viewer
	XP_063124966	(Get FASTA)	NCBI Sequence Viewer
	XP_063124967	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87062	(Get FASTA)	NCBI Sequence Viewer
	EDL96274	(Get FASTA)	NCBI Sequence Viewer
	EDL96275	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004298
	ENSRNOP00000004298.4
	ENSRNOP00000109824
GenBank Protein	Q5M9H0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001009676 ⟸ NM_001009676
- Peptide Label:	isoform 1
- UniProtKB:	Q5M9H0 (UniProtKB/Swiss-Prot), A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSELSDEASEPELLNRSLSMWHGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNK KNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAEL EMKDIQGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHG VKVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLPKSLYRSSENYEDLSSSDESWPVPQRQR PCRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPPRGYVTFTSSDENTMEGEGLCYRDVTSP INERDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQ TRTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQ DVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAI QLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQTLAQDAALVLDQLRAC QAELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQALSLPELSGALEDRVHEMGIMLRNAEPG ETTDAEWEEMEGTIARRDDSDVG hide sequence

RefSeq Acc Id:	XP_006245850 ⟸ XM_006245788
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSELSDEASEPELLNRSLSMWHGLGAQVSREELDVPLDLHTAASIGQYEVVKECVQRRELDLNK KNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAEL EMKDIQGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHG VKVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLPKSLYRSSENYEDLSSSDESWPVPQRQR PCRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPPRGYVTFTSSDENTMEGEGLCYRDVTSP INERDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQ TRTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQ DVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAI QLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQTLAQDAALVLDQLRAC QAELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQALSLPELSGALEDRVHEMGIMLRNAEPG ETTDAEWEEMEGTIARRDGESIHCVPMSALDHLTFLSLLTRCSLPLS hide sequence

RefSeq Acc Id:	XP_006245852 ⟸ XM_006245790
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MECFPHHFTQSRKFLRPVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPE GQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQQMVKFLLESGANANVRE PVYGFTPLMEAAAAGHEIIVQYFLNHGVKVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLP KSLYRSSENYEDLSSSDESWPVPQRQRPCRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPP RGYVTFTSSDENTMEGEGLCYRDVTSPINERDVESSSSSSREEPTFCASLGPVWRSSSSDGLAR AQGLSSEASIESNEDSDHARKSSVRKQTRTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKS PYSGPQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWH SSARPPSDALELAYADRLEAEMQELAIQLHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSAR KDIHAQLQEAQTLAQDAALVLDQLRACQAELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQA LSLPELSGALEDRVHEMGIMLRNAEPGETTDAEWEEMEGTIARRDGESIHCVPMSALDHLTFLS LLTRCSLPLS hide sequence

RefSeq Acc Id:

XP_008765706 ⟸ XM_008767484

- Peptide Label:

isoform X6

- Sequence:

show sequence

MKDIQGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGFTPLMEAAAAGHEIIVQYFLNHGV
KVDTRDHSGATARMLAKQYGHMKIVALMETHSPVLPKSLYRSSENYEDLSSSDESWPVPQRQRP
CRKKGLSIHEGPRALARITATGLGGKTPDSYEQVPPRGYVTFTSSDENTMEGEGLCYRDVTSPI
NERDVESSSSSSREEPTFCASLGPVWRSSSSDGLARAQGLSSEASIESNEDSDHARKSSVRKQT
RTYLKNKSRHNNSDGHWPSSTGTARTPGSEPQAEKSPYSGPQDLATLLEQIGCLKYLQVFEEQD
VDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPSDALELAYADRLEAEMQELAIQ
LHKCCEEAEALRGQVSQEQELRAVVESCLLEQDSARKDIHAQLQEAQTLAQDAALVLDQLRACQ
AELSARLKQHHSPSEATQNPPFLPADSKGWPIPLQALSLPELSGALEDRVHEMGIMLRNAEPGE
TTDAEWEEMEGTIARRDGESIHCVPMSALDHLTFLSLLTRCSLPLS

hide sequence

Ensembl Acc Id:

ENSRNOP00000004298 ⟸ ENSRNOT00000004298

Ensembl Acc Id:

ENSRNOP00000070091 ⟸ ENSRNOT00000077347

RefSeq Acc Id:	XP_038941770 ⟸ XM_039085842
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038941771 ⟸ XM_039085843
- Peptide Label:	isoform X7

RefSeq Acc Id:	NP_001401266 ⟸ NM_001414337
- Peptide Label:	isoform 2
- UniProtKB:	A6K4Q3 (UniProtKB/TrEMBL), A0A0G2JX10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124966 ⟸ XM_063268896
- Peptide Label:	isoform X2
- UniProtKB:	A6K4Q3 (UniProtKB/TrEMBL), A0A0G2JX10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124967 ⟸ XM_063268897
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JX10 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109824 ⟸ ENSRNOT00000135438

Protein Domains

SAM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M9H0-F1-model_v2	AlphaFold	Q5M9H0	1-663	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696968

Promoter ID:

EPDNEW_R7493

Type:

multiple initiation site

Name:

Anks3_1

Description:

ankyrin repeat and sterile alpha motif domain containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	10,808,801 - 10,808,861	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305833	AgrOrtholog
BioCyc Gene	G2FUF-26050	BioCyc
Ensembl Genes	ENSRNOG00000003186	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000004298	ENTREZGENE
	ENSRNOT00000004298.7	UniProtKB/Swiss-Prot
	ENSRNOT00000135438	ENTREZGENE
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
	1.25.40.20	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7131099	IMAGE-MGC_LOAD
InterPro	ANKS3_SAM	UniProtKB/Swiss-Prot
	Ankyrin_rpt	UniProtKB/Swiss-Prot
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:302937	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94228	IMAGE-MGC_LOAD
NCBI Gene	302937	ENTREZGENE
PANTHER	ANKYRIN REPEAT AND SAM DOMAIN-CONTAINING PROTEIN 3	UniProtKB/Swiss-Prot
	SI:CH211-189E2.2	UniProtKB/Swiss-Prot
Pfam	Ank_2	UniProtKB/Swiss-Prot
	Ank_4	UniProtKB/Swiss-Prot
	SAM_1	UniProtKB/Swiss-Prot
PhenoGen	Anks3	PhenoGen
PRINTS	ANKYRIN	UniProtKB/Swiss-Prot
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot
	ANK_REPEAT	UniProtKB/Swiss-Prot
	SAM_DOMAIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003186	RatGTEx
SMART	ANK	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
	SSF48403	UniProtKB/Swiss-Prot
UniProt	A0A0G2JX10	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LGA4_RAT	UniProtKB/TrEMBL
	A6K4Q3	ENTREZGENE, UniProtKB/TrEMBL
	ANKS3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Anks3	ankyrin repeat and sterile alpha motif domain containing 3	RGD1305833	similar to RIKEN cDNA 2700067D09	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1305833	similar to RIKEN cDNA 2700067D09	RGD1305833_predicted	similar to RIKEN cDNA 2700067D09 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1305833_predicted	similar to RIKEN cDNA 2700067D09 (predicted)	LOC302937_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC302937_predicted	similar to RIKEN cDNA 2700067D09 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar