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Gene: Dpy19l4 (dpy-19 like 4) Rattus norvegicus

Analyze

Symbol:

Dpy19l4

Name:

dpy-19 like 4

RGD ID:

1305828

Description:

Predicted to enable mannosyltransferase activity. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DPY19L4 (dpy-19 like 4); INTERACTS WITH bisphenol A; gentamycin; glyphosate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

dpy-19-like 4 (C. elegans); LOC297824; probable C-mannosyltransferase DPY19L4; protein dpy-19 homolog 4; RGD1305828; similar to hypothetical protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DPY19L4 (dpy-19 like 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Dpy19l4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dpy19l4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DPY19L4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DPY19L4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dpy19l4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DPY19L4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DPY19L4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dpy19l4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dpy19l4 (dpy-19 like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	IDH2 (isocitrate dehydrogenase (NADP(+)) 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	DPY19L4 (dpy-19 like 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dpy19l4 (dpy-19 like 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6659	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6659	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	dpy19l4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	29,148,518 - 29,208,132 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	29,151,129 - 29,208,132 (-)	Ensembl				GRCr8
mRatBN7.2	5	24,351,289 - 24,410,932 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	24,353,900 - 24,410,912 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	26,542,014 - 26,599,314 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	28,135,035 - 28,192,335 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	27,935,902 - 27,993,249 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	24,503,074 - 24,560,077 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	24,504,614 - 24,560,063 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	29,228,663 - 29,285,666 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	25,102,120 - 25,157,641 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	23,572,275 - 23,629,104 (-)	NCBI		Celera
RGSC_v3.1	5	25,102,433 - 25,153,137 (-)	NCBI
Cytogenetic Map	5	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bortezomib (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

dorsomorphin (ISO)

ethanol (ISO)

gentamycin (EXP)

glyphosate (EXP)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

endoplasmic reticulum membrane (IBA)

membrane (IEA)

Molecular Function

glycosyltransferase activity (IEA)

mannosyltransferase activity (IBA)

protein binding (ISO)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Dpy19l4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	29,148,518 - 29,208,132 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	29,151,129 - 29,208,132 (-)	Ensembl				GRCr8
mRatBN7.2	5	24,351,289 - 24,410,932 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	24,353,900 - 24,410,912 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	26,542,014 - 26,599,314 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	28,135,035 - 28,192,335 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	27,935,902 - 27,993,249 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	24,503,074 - 24,560,077 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	24,504,614 - 24,560,063 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	29,228,663 - 29,285,666 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	25,102,120 - 25,157,641 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	23,572,275 - 23,629,104 (-)	NCBI		Celera
RGSC_v3.1	5	25,102,433 - 25,153,137 (-)	NCBI
Cytogenetic Map	5	q13	NCBI

DPY19L4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	94,719,900 - 94,793,836 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	94,719,703 - 94,793,836 (+)	Ensembl			hg38	GRCh38
GRCh37	8	95,732,128 - 95,806,064 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	95,801,327 - 95,873,245 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	91,917,718 - 91,991,289 (+)	NCBI		Celera
Cytogenetic Map	8	q22.1	NCBI
HuRef	8	90,940,858 - 91,014,026 (+)	NCBI		HuRef
CHM1_1	8	95,772,457 - 95,846,406 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	95,844,880 - 95,918,818 (+)	NCBI		T2T-CHM13v2.0

Dpy19l4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	11,261,315 - 11,322,153 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	11,261,315 - 11,322,137 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	11,261,315 - 11,322,138 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	11,261,315 - 11,322,137 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	11,192,226 - 11,249,278 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	11,192,226 - 11,249,278 (-)	NCBI		MGSCv36	mm8
Celera	4	11,075,781 - 11,133,283 (-)	NCBI		Celera
Cytogenetic Map	4	A1	NCBI
cM Map	4	5.11	NCBI

Dpy19l4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	10,897,004 - 10,961,878 (+)	Ensembl
ChiLan1.0	NW_004955417	10,900,678 - 10,961,878 (+)	NCBI	ChiLan1.0	ChiLan1.0

DPY19L4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	112,046,804 - 112,122,524 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	87,586,600 - 87,662,825 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	91,339,865 - 91,411,401 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	93,544,453 - 93,614,482 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	93,549,992 - 93,612,548 (+)	Ensembl			panPan2	panpan1.1

DPY19L4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	39,395,950 - 39,461,084 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	39,404,395 - 39,457,233 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	39,561,067 - 39,622,696 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	39,603,297 - 39,665,709 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	39,603,306 - 39,665,840 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	39,615,466 - 39,677,567 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	39,611,279 - 39,673,618 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	40,052,716 - 40,114,522 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dpy19l4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	40,029,486 - 40,094,901 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936544	7,697,781 - 7,766,452 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936544	7,697,828 - 7,763,219 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DPY19L4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	41,925,405 - 41,985,806 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	41,920,775 - 41,985,819 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	45,239,090 - 45,299,248 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DPY19L4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	89,687,042 - 89,760,035 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666039	51,075,015 - 51,149,518 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dpy19l4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	2,081,941 - 2,161,638 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624763	2,081,960 - 2,161,632 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dpy19l4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	132,388,476 - 132,444,349 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dpy19l4
712 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	149
Count of miRNA genes:	108
Interacting mature miRNAs:	113
Transcripts:	ENSRNOT00000037869, ENSRNOT00000041286
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	13731153	43590997	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	14606078	59606078	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1578774	Tcas8	Tongue tumor susceptibility QTL 8	3.47		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	15707451	60707451	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	6922282	37468560	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001305280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037869 ⟹ ENSRNOP00000034948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	29,151,129 - 29,208,132 (-)	Ensembl
mRatBN7.2 Ensembl	5	24,353,900 - 24,410,912 (-)	Ensembl
Rnor_6.0 Ensembl	5	24,504,614 - 24,560,063 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137731 ⟹ ENSRNOP00000105732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	29,151,129 - 29,208,132 (-)	Ensembl

RefSeq Acc Id:

NM_001305280 ⟹ NP_001292209

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	29,151,129 - 29,208,132 (-)	NCBI
mRatBN7.2	5	24,353,900 - 24,410,912 (-)	NCBI
Rnor_6.0	5	24,503,074 - 24,560,077 (-)	NCBI
Celera	5	23,572,275 - 23,629,104 (-)	NCBI

Sequence:

show sequence

AGGAAGTGGGGGCGCGGCAGCCGGGAGCTGGCCGGGGCGGCCGCGGGGTTTGGATTCGCGGAGG
TTTGGGAGACTCCGGGCCGCTCGGGAACAGGAGGGCCACCCGGGACTCTGCGGAGACGATGGCA
AAGGAAGAAGGATCATCTGTAGAACCCCGCCAAAGGAAGAAGCAAAGAACTTCAGGAAGTCAGG
AAGCCAAAGCAGAGAAGATCCGCAGAACCACAGCTCCTGAAAGAGCTCCAAAATATGTTTCATT
TCAACGTTTTGCAAAGATCTTCATTGGCTGTCTTGCAGCCATTATTAGTGGTATGATGCATGTT
TTCTACCTGTCGGCTTACCACGAACGGAAATTCTGGTTTTCCAACAGGCAGGAACTTGAACGAG
AAATCACATTTCAGGGTGACAGTGCCATTTATTACTCCTATTATAAAGACATGTTAAAGGCTCC
TTCATTTGAAAGAGGTGTTTACGAGCTGACGCACAATAACAAAACCATCTCCCTGAAGACTATC
AACGCCATGCAACAGATGTCTTTGTACCCGGAACTTATTGCCAGTGTGCTCTATCAAGCAACTG
GTAGCCATGAAGTGATTGAACCAGTGTATTTCTACATTGGCATTGTTTTTGGATTACAAGGAAT
ATATGTTACAGCTTTGTTTGTTACAAGTTGGCTTATGAGTGGCACGTGGCTAGCAGGAATGCTT
ACCGTTGCATGGTTCCTAATTAACAGGGTGGACACAACAAGAATCGAGTACTCCATTCCCTTAA
GAGAAAACTGGGCTCTACCATATTTTGCATGCCAAGTTGCTGCACTTACAGGCTATTTAAAGAG
AAATGTAAATACGTACGCAGAGAGGTTTTGCTACTTGTTGCTGAGTACCTCGACGTACACGTTC
ATGATGGTGTGGGAGTACAGCCACTACATCCTGTTTCTTCAAGCAGTCTCCCTGCTGCTGTTAG
ACATCTTCTCAGTGCAGCAAAGCGACAAGGTTTATGAAGTATATAAAATCTACATATTTTCTCT
CTTCCTTGGGTATTTACTGCAGTTTGAGAATCCAGCTTTATTGGTATCTCCTTTATTAAGCTTA
ACAGGAGCGTTCATGCTTATTAAGTGCTTTCAGCTAAATGTGAAAAAAGGAACGTTTGTGGCCA
AAGTAATCAAAGTGTTTGAGTTTTACTTGTTATGTACTCTGCCAGTGACCTTAAATGTTATAGT
AAAGATGTTTGTCCCACACAAAGAAAATGAGCACGTGCTGAAATTTCTTGAAGTAAAATTTGGA
CTCAATATGACTAAGAATTTTACATTGAACTGGCTCCTTTGTCAAGAATCTCTCCAGGCACCGT
CCCAGGATTTTTTTTTACGATTGACACAATCTTCCCTATTGCCATTCTATGTTTTAGTGTTAAC
TATCTGTCTTCTTTCTATGACACAAGTTACTTTTAGGAGGATGAGTGGGAAGTCCAAGAAAGAG
ACCGCAACTCTTGAAGATGGAAGAATTGGAGAGAGGCCAGAGATCATTTACCATGTAATCCACA
CGCTTTTGCTGGGCTCTCTCGCAATGCTTGTGGAAGGCTTGAAATTCATTTGGACTCCTTACGT
GTGCATGTTAGCAGCATTTGGTGTATGTTCCCCCGAACTTTGGATGACACTTTTAAAGTGGCTT
CGATTAAGAACTGTACACCCAGTATTGTTGGCTCTTATTCTGAGCATGGCTGTGCCCACTATTA
TAGGTCTTAGTTTGTGGAAAGAGTTTTTTCCACGATTAATTACAGAATTAACAGAACTACAGGA
ATTCTATGATCCAGATACAGTGGAACTTATGACCTGGATAAAGAGGCAAGCTCCAGTTGCAGCT
GTGTTCGCAGGAAGCCCACAGTTGATGGGTGTGATCAAGCTATGCACTGGATGGACTGTGACAA
GCTTGCCACTTTACAGTGATGATGACCTTCTCAAGAGGAATGAAAATATTTACCAAATCTATTC
AAAGCGATCTGCTGAGGATATTTATAAAATACTGACATCTTATAAAGCTAACTACCTAATTGTA
GAAGATGCCATCTGCAATGAGATGGGAACCACGAGGGGCTGTAGGGTTAAAGATTTGTTAGATA
TCGCAAATGGACACGTGGTTTTTGAAGAAGGTGACAAATTAACCTATTCAAAATACGGACGATT
TTGTCACGAGGTCAAAATTAACTACTCTCCATATGTGAATTACTTCACTAGAGTATACTGGAAC
AGATCCTACTTTGTATATAAAGTCAACACTGTGATTTCCTTCCAATCTTGAACAATAACAGAGC
CTTCATTTCAAAGACATGTTACTTGAAGTAAAATACAATTTTCTTGGACCTACAGAGTTTCTTA
CAGATAAGAGTGTGGTATCTGAAATGCTGCTATTCCTCCCCACGCCTGCTGACTCCTGGGTTTA
GAGTTTTCTTGGAAGTAGGTGATGAGATGTTGATGTCTTTTAGTAAAATGTCAAGTCCACCACT
GCATCTTGCTGGCGGCCTTCTTTCTTAGCACATGACTTAAAGCCTTACCTGTTGCATCATCTCA
TACCTTACTCTATAGTATCGATCTTTATTTGAATATTTTCCAAGGTCAGTGTTAACTTTTAATT
AAGTACTTAATGTGATTTAATTCTCCAATATAAGAGAAAATTCTCCAAGGAAGTTTTTAACAGA
TGTAAATTTTCTACAATTAAAAATAATTGAAAAAAAAATTGAAATGTTAGTTAAAAATATGAGA
CACTTAAATTAAAATGGAAATAACATAAAGGAAGGATTTTATGATACTGTTCCTGTCATCTGCT
GCTTAAGTCGTGAGCACATTCTTAGTGAAACGTGTTTCATGACTAGTGAGTGACTGCCTTTTCT
CATTTATGTCCACTAAGTTAATAACAATTTAATCATGCTAACACAGTAACTGGTGTTGATACAT
ACATATGTAAATGAACATTGAAAATAATGTTATATTGCTTGGTTGTGGAGCATACAATCTAATC
ACATTGTAACGGACATATTAACACAATAATAATGTGCACACTAACACACGTCAGTTTCTGGAGG
TGTATGCGGATGCTTTTAAATAGAAGAGCAAACTGAGAGTTAAATTTAATTCTCAACAGTTCAG
AGTATAAATGCTACATTCCTTCGTGTATTTTCATTTTTGTACCATTAAAAGAAATTGTAAGCCA
GTGTGGTGGCTCATGCCTTTAATCCCAGCACTTGGGAGTCAAAGGCAGGTGAATCTCTATGAAT
TTGAAGCCAGCCTGGTCTACATAGTGAGTTCCAGGACAGCCTGGAGAGCTACATAAGTAAGACC
CTGTTTTTTTGGGGGGAGAAGGGAAGAAATTCTAAATTAATATGGCCTCTTAAAGAGATTCAGG
ATAAAACCTGTAGAGAAATGGTTTTTAATAAGATGCATATTTATTTTTACATTATACAGTTGTT
TTGTGAAAAGGTCCTATAATTTTATTTACTAGAATGGTATAAATTGCATTTTTAAGAACTCCAA
ATTAGGAAAAAAATTTCCTTTTTTTTTTGTAAAATATATGTACGTTTTTTTTTAAGTATGTGCA
CTTAGAGTAACTTCTGGAGCTTGACTGACATCTGTCATATGCTCCTGTAAATGGTCCTGTACAC
TATTTTTCATGCTTATTTTGACAAGCAGCTATGGTGGTGTGTCTCAGATGGACTCTGAATATCT
TGGTAGTCGTCACAAATATTTAACATCGAGCTTTATGGAAAATTACCAGCTAGTAAAGTACACA
CTGCGCAGTCATGGTCATTCTTGCAATCAGGGCATGCAGAAACAGCTTCCGTGTTATAAAGGAG
GAGGGACAACCGTGTTTCTCTTGTAATGGTTTTTTTGCAGTTCCCTTGTAAAATGAATTGAATT
TTTATTGACATGACAGCATGTGCTAAGTTACTTTTAGTTTTTGTTTTGTTTACTGTATCAGTAA
GCTGCTTTTGCTTCTGTCAATCTATTTTTTTTTTAATTAAAAGTTCATAATTAGTACCAGG

hide sequence

RefSeq Acc Id:

XM_039109411 ⟹ XP_038965339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	29,148,518 - 29,207,917 (-)	NCBI
mRatBN7.2	5	24,351,289 - 24,410,701 (-)	NCBI

RefSeq Acc Id:

XM_063287283 ⟹ XP_063143353

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	29,148,518 - 29,186,502 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001292209	(Get FASTA)	NCBI Sequence Viewer
	XP_038965339	(Get FASTA)	NCBI Sequence Viewer
	XP_063143353	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11677	(Get FASTA)	NCBI Sequence Viewer
	EDM11678	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034948
	ENSRNOP00000034948.6
	ENSRNOP00000105732.1

RefSeq Acc Id:

NP_001292209 ⟸ NM_001305280

- UniProtKB:

D3Z939 (UniProtKB/TrEMBL), A6JFT1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAKEEGSSVEPRQRKKQRTSGSQEAKAEKIRRTTAPERAPKYVSFQRFAKIFIGCLAAIISGMM
HVFYLSAYHERKFWFSNRQELEREITFQGDSAIYYSYYKDMLKAPSFERGVYELTHNNKTISLK
TINAMQQMSLYPELIASVLYQATGSHEVIEPVYFYIGIVFGLQGIYVTALFVTSWLMSGTWLAG
MLTVAWFLINRVDTTRIEYSIPLRENWALPYFACQVAALTGYLKRNVNTYAERFCYLLLSTSTY
TFMMVWEYSHYILFLQAVSLLLLDIFSVQQSDKVYEVYKIYIFSLFLGYLLQFENPALLVSPLL
SLTGAFMLIKCFQLNVKKGTFVAKVIKVFEFYLLCTLPVTLNVIVKMFVPHKENEHVLKFLEVK
FGLNMTKNFTLNWLLCQESLQAPSQDFFLRLTQSSLLPFYVLVLTICLLSMTQVTFRRMSGKSK
KETATLEDGRIGERPEIIYHVIHTLLLGSLAMLVEGLKFIWTPYVCMLAAFGVCSPELWMTLLK
WLRLRTVHPVLLALILSMAVPTIIGLSLWKEFFPRLITELTELQEFYDPDTVELMTWIKRQAPV
AAVFAGSPQLMGVIKLCTGWTVTSLPLYSDDDLLKRNENIYQIYSKRSAEDIYKILTSYKANYL
IVEDAICNEMGTTRGCRVKDLLDIANGHVVFEEGDKLTYSKYGRFCHEVKINYSPYVNYFTRVY
WNRSYFVYKVNTVISFQS

hide sequence

Ensembl Acc Id:

ENSRNOP00000034948 ⟸ ENSRNOT00000037869

RefSeq Acc Id:	XP_038965339 ⟸ XM_039109411
- Peptide Label:	isoform X1
- UniProtKB:	A6JFT2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143353 ⟸ XM_063287283
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000105732 ⟸ ENSRNOT00000137731

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z939-F1-model_v2	AlphaFold	D3Z939	1-722	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693571

Promoter ID:

EPDNEW_R4088

Type:

multiple initiation site

Name:

Dpy19l4_1

Description:

dpy-19 like 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	24,560,066 - 24,560,126	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305828	AgrOrtholog
BioCyc Gene	G2FUF-41948	BioCyc
Ensembl Genes	ENSRNOG00000025416	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037869	ENTREZGENE
	ENSRNOT00000037869.9	UniProtKB/TrEMBL
	ENSRNOT00000137731.1	UniProtKB/TrEMBL
InterPro	Dpy-19	UniProtKB/TrEMBL
	Dpy19L4	UniProtKB/TrEMBL
KEGG Report	rno:297824	UniProtKB/TrEMBL
NCBI Gene	297824	ENTREZGENE
PANTHER	PTHR31488	UniProtKB/TrEMBL
	PTHR31488:SF2	UniProtKB/TrEMBL
Pfam	Dpy19	UniProtKB/TrEMBL
PhenoGen	Dpy19l4	PhenoGen
RatGTEx	ENSRNOG00000025416	RatGTEx
UniProt	A0ABK0LVN6_RAT	UniProtKB/TrEMBL
	A6JFT1	ENTREZGENE, UniProtKB/TrEMBL
	A6JFT2	ENTREZGENE, UniProtKB/TrEMBL
	D3Z939	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-08-16	Dpy19l4	dpy-19 like 4	Dpy19l4	dpy-19-like 4 (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Dpy19l4	dpy-19-like 4 (C. elegans)	RGD1305828_predicted	similar to hypothetical protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1305828_predicted	similar to hypothetical protein (predicted)	LOC297824_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC297824_predicted	similar to hypothetical protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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