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Gene: Podxl2 (podocalyxin-like 2) Rattus norvegicus

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Symbol:

Podxl2

Name:

podocalyxin-like 2

RGD ID:

1305815

Description:

Predicted to be involved in leukocyte tethering or rolling. Predicted to be located in plasma membrane. Orthologous to human PODXL2 (podocalyxin like 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC297433; podocalyxin-like protein 2; RGD1305815; similar to RIKEN cDNA D130074J02 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PODXL2 (podocalyxin like 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Podxl2 (podocalyxin-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Podxl2 (podocalyxin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PODXL2 (podocalyxin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PODXL2 (podocalyxin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Podxl2 (podocalyxin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PODXL2 (podocalyxin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PODXL2 (podocalyxin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Podxl2 (podocalyxin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PKN1 (protein kinase N1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PODXL2 (podocalyxin like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Podxl2 (podocalyxin-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	podxl2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	122,863,476 - 122,895,318 (-)	NCBI		GRCr8
mRatBN7.2	4	121,306,224 - 121,338,070 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	121,306,224 - 121,338,112 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	126,777,877 - 126,809,657 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	122,552,628 - 122,584,406 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	121,176,866 - 121,208,646 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	120,785,494 - 120,817,335 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	120,785,495 - 120,817,377 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	186,026,103 - 186,057,942 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	122,937,318 - 122,969,158 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	123,181,806 - 123,213,244 (-)	NCBI
Celera	4	110,259,432 - 110,291,285 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Podxl2	Rat	alkaptonuria		ISO	PODXL2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Alkaptonuria	ClinVar	PMID:12501223 more ...
Podxl2	Rat	immunodeficiency 21		ISO	PODXL2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: GATA2 DEFICIENCY	ClinVar	PMID:28492532
Podxl2	Rat	Primary Lymphedema with Myelodysplasia		ISO	PODXL2 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:19449416 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Podxl2	Rat	2,2',4,4'-Tetrabromodiphenyl ether	decreases expression	EXP		6480464	2 more ...	CTD	PMID:27291303
Podxl2	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of PODXL2 mRNA	CTD	PMID:32109520
Podxl2	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	Podxl2 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of PODXL2 mRNA	CTD	PMID:20188158
Podxl2	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	Podxl2 (Mus musculus)	6480464	bisphenol S affects the methylation of PODXL2 gene	CTD	PMID:31683443
Podxl2	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of PODXL2 mRNA	CTD	PMID:30047161
Podxl2	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of PODXL2 mRNA	CTD	PMID:28959563
Podxl2	Rat	aflatoxin B1	increases methylation	ISO	PODXL2 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of PODXL2 gene	CTD	PMID:27153756
Podxl2	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of PODXL2 mRNA	CTD	PMID:30047161
Podxl2	Rat	aristolochic acid A	decreases expression	ISO	PODXL2 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of PODXL2 mRNA	CTD	PMID:33212167
Podxl2	Rat	benzo[a]pyrene	increases expression	ISO	PODXL2 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of PODXL2 mRNA	CTD	PMID:22316170
Podxl2	Rat	benzo[a]pyrene	increases methylation	ISO	Podxl2 (Mus musculus)	6480464	Benzo(a)pyrene results in increased methylation of PODXL2 exon and Benzo(a)pyrene results in increased methylation of PODXL2 intron	CTD	PMID:27901495
Podxl2	Rat	benzo[a]pyrene	increases methylation	ISO	PODXL2 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of PODXL2 promoter	CTD	PMID:27901495
Podxl2	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of PODXL2 mRNA	CTD	PMID:25181051 and PMID:32145629
Podxl2	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of PODXL2 mRNA	CTD	PMID:30816183 more ...
Podxl2	Rat	bisphenol A	affects expression	ISO	PODXL2 (Homo sapiens)	6480464	bisphenol A affects the expression of PODXL2 mRNA	CTD	PMID:30903817
Podxl2	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of PODXL2 gene	CTD	PMID:28505145
Podxl2	Rat	butanal	increases expression	ISO	PODXL2 (Homo sapiens)	6480464	butyraldehyde results in increased expression of PODXL2 mRNA	CTD	PMID:26079696
Podxl2	Rat	cadmium dichloride	decreases expression	ISO	PODXL2 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of PODXL2 mRNA	CTD	PMID:38568856
Podxl2	Rat	cantharidin	decreases expression	ISO	Podxl2 (Mus musculus)	6480464	Cantharidin results in decreased expression of PODXL2 mRNA	CTD	PMID:36907384
Podxl2	Rat	chlorpyrifos	increases expression	ISO	Podxl2 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of PODXL2 mRNA	CTD	PMID:37019170
Podxl2	Rat	choline	multiple interactions	ISO	Podxl2 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of PODXL2 mRNA	CTD	PMID:20938992
Podxl2	Rat	cisplatin	multiple interactions	ISO	PODXL2 (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of PODXL2 mRNA	CTD	PMID:27392435
Podxl2	Rat	copper atom	increases expression	EXP		6480464	Copper results in increased expression of PODXL2 mRNA	CTD	PMID:30556269
Podxl2	Rat	copper(0)	increases expression	EXP		6480464	Copper results in increased expression of PODXL2 mRNA	CTD	PMID:30556269
Podxl2	Rat	copper(II) sulfate	increases expression	ISO	PODXL2 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of PODXL2 mRNA	CTD	PMID:19549813
Podxl2	Rat	cytarabine	increases expression	ISO	PODXL2 (Homo sapiens)	6480464	Cytarabine results in increased expression of PODXL2 mRNA	CTD	PMID:21198554
Podxl2	Rat	dorsomorphin	multiple interactions	ISO	PODXL2 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of PODXL2 mRNA	CTD	PMID:27188386
Podxl2	Rat	folic acid	multiple interactions	ISO	Podxl2 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of PODXL2 mRNA	CTD	PMID:20938992
Podxl2	Rat	FR900359	decreases phosphorylation	ISO	PODXL2 (Homo sapiens)	6480464	FR900359 results in decreased phosphorylation of PODXL2 protein	CTD	PMID:37730182
Podxl2	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of PODXL2 mRNA	CTD	PMID:27387713
Podxl2	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of PODXL2 mRNA	CTD	PMID:33387578
Podxl2	Rat	L-methionine	multiple interactions	ISO	Podxl2 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of PODXL2 mRNA	CTD	PMID:20938992
Podxl2	Rat	lead(0)	affects expression	ISO	PODXL2 (Homo sapiens)	6480464	Lead affects the expression of PODXL2 mRNA	CTD	PMID:28903495
Podxl2	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of PODXL2 mRNA	CTD	PMID:30047161
Podxl2	Rat	Monobutylphthalate	decreases expression	ISO	Podxl2 (Mus musculus)	6480464	monobutyl phthalate results in decreased expression of PODXL2 mRNA	CTD	PMID:35278568
Podxl2	Rat	ozone	multiple interactions	ISO	Podxl2 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of Ozone] which results in decreased expression of PODXL2 mRNA	CTD	PMID:34911549
Podxl2	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of PODXL2 mRNA	CTD	PMID:33387578
Podxl2	Rat	paraquat	decreases expression	EXP		6480464	Paraquat results in decreased expression of PODXL2 mRNA	CTD	PMID:32680482
Podxl2	Rat	pentanal	increases expression	ISO	PODXL2 (Homo sapiens)	6480464	pentanal results in increased expression of PODXL2 mRNA	CTD	PMID:26079696
Podxl2	Rat	phenylmercury acetate	decreases expression	ISO	PODXL2 (Homo sapiens)	6480464	Phenylmercuric Acetate results in decreased expression of PODXL2 mRNA	CTD	PMID:26272509
Podxl2	Rat	phenylmercury acetate	multiple interactions	ISO	PODXL2 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of PODXL2 mRNA	CTD	PMID:27188386
Podxl2	Rat	potassium chromate	increases expression	ISO	PODXL2 (Homo sapiens)	6480464	potassium chromate(VI) results in increased expression of PODXL2 mRNA	CTD	PMID:22714537
Podxl2	Rat	propiconazole	decreases expression	EXP		6480464	propiconazole results in decreased expression of PODXL2 mRNA	CTD	PMID:30047161
Podxl2	Rat	SB 431542	multiple interactions	ISO	PODXL2 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of PODXL2 mRNA	CTD	PMID:27188386
Podxl2	Rat	sodium arsenate	decreases expression	ISO	Podxl2 (Mus musculus)	6480464	sodium arsenate results in decreased expression of PODXL2 mRNA	CTD	PMID:21795629
Podxl2	Rat	sodium arsenite	decreases expression	ISO	PODXL2 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of PODXL2 mRNA	CTD	PMID:38568856
Podxl2	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of PODXL2 mRNA	CTD	PMID:30047161
Podxl2	Rat	sunitinib	decreases expression	ISO	PODXL2 (Homo sapiens)	6480464	Sunitinib results in decreased expression of PODXL2 mRNA	CTD	PMID:31533062
Podxl2	Rat	temozolomide	increases expression	ISO	PODXL2 (Homo sapiens)	6480464	Temozolomide results in increased expression of PODXL2 mRNA	CTD	PMID:31758290
Podxl2	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of PODXL2 mRNA	CTD	PMID:34492290
Podxl2	Rat	thiram	decreases expression	ISO	PODXL2 (Homo sapiens)	6480464	Thiram results in decreased expression of PODXL2 mRNA	CTD	PMID:38568856
Podxl2	Rat	titanium dioxide	decreases methylation	ISO	Podxl2 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of PODXL2 promoter	CTD	PMID:35295148
Podxl2	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of PODXL2 mRNA	CTD	PMID:33387578
Podxl2	Rat	triclosan	increases expression	ISO	PODXL2 (Homo sapiens)	6480464	Triclosan results in increased expression of PODXL2 mRNA	CTD	PMID:30510588
Podxl2	Rat	tunicamycin	decreases expression	ISO	PODXL2 (Homo sapiens)	6480464	Tunicamycin results in decreased expression of PODXL2 mRNA	CTD	PMID:22378314

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Podxl2	Rat	cell adhesion	involved_in	IEA	UniProtKB-KW:KW-0130	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Podxl2	Rat	leukocyte tethering or rolling	involved_in	ISO	PODXL2 (Homo sapiens)	1624291	PMID:18606703	RGD	PMID:18606703
Podxl2	Rat	leukocyte tethering or rolling	involved_in	IBA	PANTHER:PTN002694972 and UniProtKB:Q9NZ53	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Podxl2	Rat	leukocyte tethering or rolling	involved_in	IEA	UniProtKB:Q9NZ53 and ensembl:ENSP00000345359	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Podxl2	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Podxl2	Rat	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Podxl2	Rat	plasma membrane	located_in	IEA	ARBA:ARBA00027801	1600115	GO_REF:0000117	UniProt	GO_REF:0000117

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Podxl2	Rat	protein binding	enables	ISO	PODXL2 (Homo sapiens) and UniProtKB:Q9NZ53-2	1624291	UniProtKB:Q92876 and PMID:32814053	RGD	PMID:32814053
Podxl2	Rat	protein binding	enables	ISO	PODXL2 (Homo sapiens)	1624291	UniProtKB:P14151 more ...	RGD	PMID:18606703

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:18606703

Podxl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	122,863,476 - 122,895,318 (-)	NCBI		GRCr8
mRatBN7.2	4	121,306,224 - 121,338,070 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	121,306,224 - 121,338,112 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	126,777,877 - 126,809,657 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	122,552,628 - 122,584,406 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	121,176,866 - 121,208,646 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	120,785,494 - 120,817,335 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	120,785,495 - 120,817,377 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	186,026,103 - 186,057,942 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	122,937,318 - 122,969,158 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	123,181,806 - 123,213,244 (-)	NCBI
Celera	4	110,259,432 - 110,291,285 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

PODXL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	127,629,185 - 127,672,802 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	127,629,185 - 127,672,802 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	127,348,028 - 127,391,645 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	128,830,729 - 128,874,342 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	128,830,757 - 128,874,343	NCBI
Celera	3	125,774,516 - 125,818,509 (+)	NCBI		Celera
Cytogenetic Map	3	q21.3	NCBI
HuRef	3	124,737,918 - 124,772,415 (+)	NCBI		HuRef
CHM1_1	3	127,311,335 - 127,354,973 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	130,363,847 - 130,407,463 (+)	NCBI		T2T-CHM13v2.0

Podxl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	88,819,539 - 88,852,063 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	88,819,540 - 88,852,026 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	88,842,557 - 88,875,046 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	88,842,558 - 88,875,044 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	88,792,552 - 88,824,038 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	88,808,206 - 88,839,685 (-)	NCBI		MGSCv36	mm8
Celera	6	90,780,757 - 90,812,060 (-)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI
cM Map	6	39.6	NCBI

Podxl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	15,968,877 - 15,995,617 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	15,968,877 - 15,995,617 (-)	NCBI	ChiLan1.0	ChiLan1.0

PODXL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	125,552,311 - 125,595,910 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	125,557,033 - 125,600,632 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	124,673,860 - 124,717,469 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	131,981,894 - 132,023,746 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	131,981,894 - 132,023,747 (+)	Ensembl	panpan1.1		panPan2

PODXL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	1,716,672 - 1,752,872 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	1,716,666 - 1,760,035 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	1,753,643 - 1,790,583 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	1,737,533 - 1,774,473 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	1,737,518 - 1,774,460 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	1,458,873 - 1,495,811 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	1,786,551 - 1,823,197 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	1,744,755 - 1,783,027 (+)	NCBI		UU_Cfam_GSD_1.0

Podxl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	20,694,530 - 20,703,780 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936798	736,003 - 745,634 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PODXL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	72,579,311 - 72,622,950 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	72,579,310 - 72,630,179 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	80,097,261 - 80,140,920 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PODXL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	53,370,668 - 53,405,832 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	53,371,004 - 53,403,512 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	112,941,079 - 112,984,367 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Podxl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624974	43,335 - 76,837 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624974	43,578 - 76,918 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Podxl2
62 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	48
Count of miRNA genes:	43
Interacting mature miRNAs:	46
Transcripts:	ENSRNOT00000021826
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	85253748	148090731	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	95174120	140174120	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	90850165	135850165	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	116179486	151161268	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	106649412	151649412	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	86730991	131730991	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	87327165	132327165	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	120260281	147278687	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	87327165	132327165	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	105789505	150789505	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	119428175	157578333	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	84728680	129854654	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	106805662	151805662	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	120926564	148090731	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	103194656	148194656	Rat
12798527	Anxrr58	Anxiety related response QTL 58	4.11	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	119463257	147278687	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001106607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021826 ⟹ ENSRNOP00000021826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	121,306,225 - 121,338,112 (-)	Ensembl
Rnor_6.0 Ensembl	4	120,785,495 - 120,817,377 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115896 ⟹ ENSRNOP00000077070

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	121,306,224 - 121,328,896 (-)	Ensembl

RefSeq Acc Id:

NM_001106607 ⟹ NP_001100077

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	122,863,476 - 122,895,318 (-)	NCBI
mRatBN7.2	4	121,306,224 - 121,338,070 (-)	NCBI
Rnor_6.0	4	120,785,494 - 120,817,335 (-)	NCBI
Rnor_5.0	4	186,026,103 - 186,057,942 (-)	NCBI
RGSC_v3.4	4	122,937,318 - 122,969,158 (-)	RGD
Celera	4	110,259,432 - 110,291,285 (-)	RGD

Sequence:

show sequence

CAACGCTGCACCATGGCCCGGCCGCTGCGGGCCGCCGGACTGCCGCCGCCGCTGTTGTTGCTACTGGCCGCTGGAGTTTCCCTGGGTGCCTGTGCAGTGACCATGGATGAGCCTGGCCCTGAGGGCCT
CACCTCCACATCCCTGCTGGATCTGTTGTTGCCCACTGACTTTGAGCCACTGGACTCGGAGGAGCCCAGTGAGGCCATGGGTCTAGGTGCCGGCCTAGCCCCGGGCTCAGGCTTCCCCAGTGAGGACA
GCGAGGAGTCCCGGCTCCTGCAGCCACCACAGTACTTCTGGGAAGAGGAGGAACTAAACGGCTCCAGCCTGGACCTGGGTCCCACTGCAGACTACGTCTTCCCAGACCTGACTGAGAAGGTGGCTTCC
ATGGAAGACCCAGGGCAGGCTCCAGACCTGCCAAACCTCCCCTCCATCCTGCCCAAGATGGATCTCGCTGAGCCTCCCTGGCATATGCCTCTGGAAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGA
AGAGGAAAGGGAGGAAGAGGAGAGGGAGAAGGAAGAAGCAGAGGAGGAGGAGGAAGAAGAGCTGCTCCCTGTGAGCGGGTCCCCAGGAGCCACCACACAGGCCCATGCCCCTTCACCTAGCACCAGCA
GCACCAGCAGCCAGAGTCCTGGGGCCACCAGACACAGGCAGGATGATTCTGGGGACCAGGCCACATCAGGAATAGAGGTGGAAAGCAGTGTGAAACCCACCTTGTCAGTGCCCTCAGTCACCCCAAGT
ACAGTGGCCCTGGGGGTTCAGAACTACAGCCAGGAATCTGGGGGCACTGAGTGGCCAACGGGGGGGCTGGGGGTACAGTCTGAGGTTCCCCAGGGAGCTGGTGAGGAGGCCACAGTGGGAGCAGCTGA
CTATGATGGCCAGCAGGGGGCACTGCCATCTACTTCACTCCCACAAACAGTGCCTCCAAGTGGGACTGAGGTCCCCGGTGAGGGTCCCCTTTACCCCAGAACCCCAGACTCTTTCCCACCTGGACCCC
AAGACACAGAGTCAACCCCTTCCTCTGCTACCTGGGGACAAGAAGGTCTCAGTGAGCAGCCCCTGGAGGGTCAGACAGCTGAAGCTCACTCACTAACACCGTGGGACTCTACTCAGGTGATCTGCAAG
GATTGGAGCAACCTGGCCGGGAAGAGCTACGTCATCCTGAACATGACAGAGAACATAGACTGTGAAGTGTTTCGGCGACACCGGGGACTACGGCTCCTAGCCCTGGTGGAGGAGGTTCTGCCACGCCA
CCGTAGTGGCCACCGTGGAGACTGGCATATCTCTCTCAGCAAGCCCAGTGAGAAAGAGCAGCACCTGCTGATGACTCTTGTAGGAGAGCAGGGGGTGGTACCCACTCAAGATGTCCTTTCCATGCTCA
GTGGCATCCGCAGGAGTCTGGAGGAGATTGGCATCCAGAACTACTCCACCACCAGCAGCTGCCAGGCACGGGCCACCCAGGTGCGCAGTGACTACGGGACACTCTTTGTAGTGCTGGTGATCATTGGT
GTCATCTGCTTCATCATCATTGTGCTTGGCCTACTCTACAATTGTTGGCAGCGTCGGCTGCCCAAGCTGAAACACGTGTCGCACGGTGAGGAGCTTCGCTTCGTGGAGAACGGCTGCCACGACAATCC
CACGCTGGACGTGGCCAGCGACAGCCAGTCGGAGATGCAGGAGAAGCAGCCCAGCCTGAACGGTGGGGCCATCAACGGCCCGAGCAGCTGGAGCGCGCTCATGGGCAGCAAGCGCGACCCTGAGGACT
CTGACGTGTTCGAGGAGGACACTCACCTGTGAGCGCCGGGCCACGGGCGCGAGACTGCCAGACGCTACGGCCCCGCGCCCCTCCCGTCCCTCCACGCGGGTCACTACGCTTCCCCACCGCAGCAGGCG
ACCGAGGCGCAGCTCCCACCCCGCCCCGCCCGGCCCCGAGCGCTTGCCCGAGGCCAGCGCGCTCCCCGCGCCCGGACTCCATTAAAGCCGCCAACACGCGCGGGCCGCTCTGCC

hide sequence

RefSeq Acc Id:

XM_063285818 ⟹ XP_063141888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	122,863,477 - 122,894,908 (-)	NCBI


Protein RefSeqs	NP_001100077	(Get FASTA)	NCBI Sequence Viewer
	XP_063141888	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61970	(Get FASTA)	NCBI Sequence Viewer
	EDL91320	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021826
	ENSRNOP00000021826.5
	ENSRNOP00000077070.1

RefSeq Acc Id:	NP_001100077 ⟸ NM_001106607
- Peptide Label:	precursor
- UniProtKB:	B1WC18 (UniProtKB/TrEMBL), F7FNA3 (UniProtKB/TrEMBL), A0A8I5Y155 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARPLRAAGLPPPLLLLLAAGVSLGACAVTMDEPGPEGLTSTSLLDLLLPTDFEPLDSEEPSEAMGLGAGLAPGSGFPSEDSEESRLLQPPQYFWEEEELNGSSLDLGPTADYVFPDLTEKVASMEDP GQAPDLPNLPSILPKMDLAEPPWHMPLEEEEEEEEEEEEEEREEEEREKEEAEEEEEEELLPVSGSPGATTQAHAPSPSTSSTSSQSPGATRHRQDDSGDQATSGIEVESSVKPTLSVPSVTPSTVAL GVQNYSQESGGTEWPTGGLGVQSEVPQGAGEEATVGAADYDGQQGALPSTSLPQTVPPSGTEVPGEGPLYPRTPDSFPPGPQDTESTPSSATWGQEGLSEQPLEGQTAEAHSLTPWDSTQVICKDWSN LAGKSYVILNMTENIDCEVFRRHRGLRLLALVEEVLPRHRSGHRGDWHISLSKPSEKEQHLLMTLVGEQGVVPTQDVLSMLSGIRRSLEEIGIQNYSTTSSCQARATQVRSDYGTLFVVLVIIGVICF IIIVLGLLYNCWQRRLPKLKHVSHGEELRFVENGCHDNPTLDVASDSQSEMQEKQPSLNGGAINGPSSWSALMGSKRDPEDSDVFEEDTHL hide sequence

Ensembl Acc Id:

ENSRNOP00000021826 ⟸ ENSRNOT00000021826

Ensembl Acc Id:

ENSRNOP00000077070 ⟸ ENSRNOT00000115896

RefSeq Acc Id:	XP_063141888 ⟸ XM_063285818
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y155 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1WC18-F1-model_v2	AlphaFold	B1WC18	1-603	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13693239

Promoter ID:

EPDNEW_R3761

Type:

initiation region

Name:

Podxl2_1

Description:

podocalyxin-like 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	120,817,390 - 120,817,450	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-43801	BioCyc
Ensembl Genes	ENSRNOG00000016255	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021826	ENTREZGENE
	ENSRNOT00000021826.7	UniProtKB/TrEMBL
	ENSRNOT00000115896.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9028963	IMAGE-MGC_LOAD
InterPro	CD34/Podocalyxin	UniProtKB/TrEMBL
	PODXL2	UniProtKB/TrEMBL
KEGG Report	rno:297433	UniProtKB/TrEMBL
MGC_CLONE	MGC:187779	IMAGE-MGC_LOAD
NCBI Gene	297433	ENTREZGENE
PANTHER	PODOCALYXIN-LIKE PROTEIN 2	UniProtKB/TrEMBL
	PTHR15594	UniProtKB/TrEMBL
Pfam	CD34_antigen	UniProtKB/TrEMBL
PhenoGen	Podxl2	PhenoGen
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016255	RatGTEx
UniProt	A0A8I5Y155	ENTREZGENE, UniProtKB/TrEMBL
	B1WC18	ENTREZGENE, UniProtKB/TrEMBL
	F7FNA3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Podxl2	podocalyxin-like 2	Podxl2_predicted	podocalyxin-like 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Podxl2_predicted	podocalyxin-like 2 (predicted)	RGD1305815_predicted	similar to RIKEN cDNA D130074J02 gene (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1305815_predicted	similar to RIKEN cDNA D130074J02 gene (predicted)	LOC297433_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC297433_predicted	similar to RIKEN cDNA D130074J02 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar