Card6 (caspase recruitment domain family, member 6) - Rat Genome Database

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Gene: Card6 (caspase recruitment domain family, member 6) Rattus norvegicus
Analyze
Symbol: Card6
Name: caspase recruitment domain family, member 6
RGD ID: 1305805
Description: Predicted to be involved in regulation of apoptotic process. Orthologous to human CARD6 (caspase recruitment domain family member 6); PARTICIPATES IN NOD-like receptor signaling pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: caspase recruitment domain-containing protein 6; LOC294770
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8255,921,832 - 55,934,388 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl255,921,832 - 55,934,363 (-)EnsemblGRCr8
mRatBN7.2254,194,343 - 54,206,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl254,195,739 - 54,206,846 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx261,299,299 - 61,311,822 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0259,357,975 - 59,370,500 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0254,370,308 - 54,382,800 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0254,810,676 - 54,824,050 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl254,810,110 - 54,824,033 (-)Ensemblrn6Rnor6.0
Rnor_5.0273,835,745 - 73,849,031 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4254,282,217 - 54,293,630 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera249,844,057 - 49,855,089 (-)NCBICelera
RGSC_v3.1254,211,387 - 54,221,786 (-)NCBI
Cytogenetic Map2q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Brevetoxin B  (ISO)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
DDE  (EXP,ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
fructose  (EXP)
gentamycin  (EXP)
GSK-J4  (ISO)
indometacin  (ISO)
methylmercury chloride  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
nickel atom  (ISO)
nitrates  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PF-3758309  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
sanguinarine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Card6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8255,921,832 - 55,934,388 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl255,921,832 - 55,934,363 (-)EnsemblGRCr8
mRatBN7.2254,194,343 - 54,206,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl254,195,739 - 54,206,846 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx261,299,299 - 61,311,822 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0259,357,975 - 59,370,500 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0254,370,308 - 54,382,800 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0254,810,676 - 54,824,050 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl254,810,110 - 54,824,033 (-)Ensemblrn6Rnor6.0
Rnor_5.0273,835,745 - 73,849,031 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4254,282,217 - 54,293,630 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera249,844,057 - 49,855,089 (-)NCBICelera
RGSC_v3.1254,211,387 - 54,221,786 (-)NCBI
Cytogenetic Map2q16NCBI
CARD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38540,841,367 - 40,855,354 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl540,841,308 - 40,860,175 (+)Ensemblhg38GRCh38
GRCh37540,841,469 - 40,855,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36540,877,167 - 40,891,213 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34540,877,053 - 40,891,211NCBI
Celera540,730,018 - 40,744,065 (+)NCBICelera
Cytogenetic Map5p13.1NCBI
HuRef540,793,014 - 40,807,089 (+)NCBIHuRef
CHM1_1540,843,508 - 40,857,554 (+)NCBICHM1_1
T2T-CHM13v2.0541,097,788 - 41,111,778 (+)NCBIT2T-CHM13v2.0
Card6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39155,126,402 - 5,146,762 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl155,125,463 - 5,138,021 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38155,096,920 - 5,116,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl155,095,981 - 5,108,539 (-)Ensemblmm10GRCm38
MGSCv37155,047,439 - 5,058,533 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36155,044,654 - 5,055,748 (-)NCBIMGSCv36mm8
Celera154,947,408 - 4,958,502 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map151.99NCBI
Card6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542625,123,436 - 25,132,198 (+)NCBIChiLan1.0ChiLan1.0
CARD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2469,483,172 - 69,497,483 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1567,636,804 - 67,651,115 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0569,531,706 - 69,545,703 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1574,573,149 - 74,586,664 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl574,569,187 - 74,586,664 (-)EnsemblpanPan2panpan1.1
CARD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1468,537,678 - 68,549,369 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl468,538,238 - 68,549,156 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha468,214,606 - 68,254,927 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0469,044,602 - 69,085,132 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl469,044,608 - 69,056,140 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1468,803,939 - 68,844,277 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0468,916,991 - 68,957,324 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0469,456,013 - 69,496,499 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Card6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213229,593,725 - 229,607,872 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365181,764,845 - 1,777,710 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365181,764,261 - 1,777,740 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11625,803,851 - 25,817,515 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CARD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1439,596,452 - 39,611,355 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl439,596,376 - 39,610,448 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607130,021,055 - 30,036,424 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Card6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475914,104,065 - 14,114,374 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Card6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13175,214,164 - 175,225,563 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Card6
85 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:290
Count of miRNA genes:186
Interacting mature miRNAs:212
Transcripts:ENSRNOT00000039057
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24490435585286097Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)25126685996266859Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)24490435589904355Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000039057   ⟹   ENSRNOP00000032723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl255,921,832 - 55,934,322 (-)Ensembl
mRatBN7.2 Ensembl254,195,739 - 54,206,755 (-)Ensembl
Rnor_6.0 Ensembl254,812,252 - 54,823,917 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079333   ⟹   ENSRNOP00000068759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl254,810,110 - 54,824,033 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108176   ⟹   ENSRNOP00000095462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl255,921,832 - 55,934,363 (-)Ensembl
mRatBN7.2 Ensembl254,196,617 - 54,206,846 (-)Ensembl
RefSeq Acc Id: NM_001395067   ⟹   NP_001381996
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8255,921,832 - 55,934,322 (-)NCBI
mRatBN7.2254,194,352 - 54,206,846 (-)NCBI
RefSeq Acc Id: XM_008760761   ⟹   XP_008758983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8255,921,836 - 55,934,388 (-)NCBI
mRatBN7.2254,194,343 - 54,206,902 (-)NCBI
Rnor_6.0254,810,676 - 54,824,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590717   ⟹   XP_017446206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8255,921,836 - 55,934,368 (-)NCBI
mRatBN7.2254,194,343 - 54,206,895 (-)NCBI
Rnor_6.0254,810,676 - 54,824,050 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001381996 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758983 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446206 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75729 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000032723
  ENSRNOP00000032723.4
  ENSRNOP00000095462
  ENSRNOP00000095462.2
RefSeq Acc Id: XP_008758983   ⟸   XM_008760761
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GLM7 (UniProtKB/TrEMBL),   A6KGD6 (UniProtKB/TrEMBL),   D3ZVT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446206   ⟸   XM_017590717
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GLM7 (UniProtKB/TrEMBL),   A6KGD6 (UniProtKB/TrEMBL),   D3ZVT3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068759   ⟸   ENSRNOT00000079333
Ensembl Acc Id: ENSRNOP00000032723   ⟸   ENSRNOT00000039057
Ensembl Acc Id: ENSRNOP00000095462   ⟸   ENSRNOT00000108176
RefSeq Acc Id: NP_001381996   ⟸   NM_001395067
- UniProtKB: A0A8I6GLM7 (UniProtKB/TrEMBL),   A6KGD6 (UniProtKB/TrEMBL),   D3ZVT3 (UniProtKB/TrEMBL)
Protein Domains
CARD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTL6-F1-model_v2 AlphaFold A0A0G2JTL6 1-1126 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691166
Promoter ID:EPDNEW_R1691
Type:initiation region
Name:Card6_1
Description:caspase recruitment domain family, member 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0254,824,013 - 54,824,073EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305805 AgrOrtholog
BioCyc Gene G2FUF-54181 BioCyc
Ensembl Genes ENSRNOG00000001271 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039057 ENTREZGENE
  ENSRNOT00000039057.5 UniProtKB/TrEMBL
  ENSRNOT00000108176 ENTREZGENE
  ENSRNOT00000108176.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
InterPro Apoptosis_Repressor_CARD UniProtKB/TrEMBL
  CARD UniProtKB/TrEMBL
  DEATH-like UniProtKB/TrEMBL
  URGCP UniProtKB/TrEMBL
NCBI Gene 294770 ENTREZGENE
PANTHER CARD6/NUCLEOLAR PROTEIN 3 UniProtKB/TrEMBL
  CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam CARD UniProtKB/TrEMBL
  URGCP UniProtKB/TrEMBL
PhenoGen Card6 PhenoGen
PROSITE CARD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001271 RatGTEx
SMART CARD UniProtKB/TrEMBL
Superfamily-SCOP DEATH_like UniProtKB/TrEMBL
UniProt A0A8I6GLM7 ENTREZGENE, UniProtKB/TrEMBL
  A6KGD6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVT3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Card6  caspase recruitment domain family, member 6   Card6_predicted  caspase recruitment domain family, member 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Card6_predicted  caspase recruitment domain family, member 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED