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Gene: Wbp1l (WW domain binding protein 1-like) Rattus norvegicus

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Symbol:

Wbp1l

Name:

WW domain binding protein 1-like

RGD ID:

1305793

Description:

Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in CXCL12-activated CXCR4 signaling pathway. Predicted to act upstream of or within hemopoiesis and positive regulation of protein ubiquitination. Predicted to be located in membrane. Orthologous to human WBP1L (WW domain binding protein 1 like); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC309456; MGC188498; Opal1; outcome predictor in acute leukemia 1 homolog; RGD1305793; similar to hypothetical protein FLJ20154

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,413,701 - 255,470,026 (+)	NCBI		GRCr8
mRatBN7.2	1	245,472,292 - 245,528,627 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,472,296 - 245,528,627 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	253,603,774 - 253,660,018 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	260,294,360 - 260,350,576 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	252,946,421 - 253,002,910 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	266,358,728 - 266,415,296 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,358,728 - 266,415,296 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	273,789,070 - 273,845,332 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	251,901,560 - 251,958,599 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	252,164,839 - 252,219,229 (+)	NCBI
Celera	1	241,258,195 - 241,314,452 (+)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

desmoplastic/nodular medulloblastoma (ISO)

nevoid basal cell carcinoma syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

buspirone (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

chloroethene (ISO)

clofibrate (ISO)

clozapine (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

flutamide (EXP)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

haloperidol (ISO)

lead(0) (ISO)

methoxychlor (EXP)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trovafloxacin (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CXCL12-activated CXCR4 signaling pathway (IBA,IEA,ISO)

hemopoiesis (IEA,ISO)

positive regulation of protein ubiquitination (IEA,ISO)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

ubiquitin protein ligase binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15057822	PMID:26349411	PMID:26695678

Genomics

Comparative Map Data

Wbp1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	255,413,701 - 255,470,026 (+)	NCBI		GRCr8
mRatBN7.2	1	245,472,292 - 245,528,627 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	245,472,296 - 245,528,627 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	253,603,774 - 253,660,018 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	260,294,360 - 260,350,576 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	252,946,421 - 253,002,910 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	266,358,728 - 266,415,296 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	266,358,728 - 266,415,296 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	273,789,070 - 273,845,332 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	251,901,560 - 251,958,599 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	252,164,839 - 252,219,229 (+)	NCBI
Celera	1	241,258,195 - 241,314,452 (+)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

WBP1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	102,743,948 - 102,816,262 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	102,743,948 - 102,834,516 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	104,503,705 - 104,576,019 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	104,493,717 - 104,566,011 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	104,525,995 - 104,565,310	NCBI
Celera	10	98,244,781 - 98,316,734 (+)	NCBI		Celera
Cytogenetic Map	10	q24.32	NCBI
HuRef	10	98,138,761 - 98,210,815 (+)	NCBI		HuRef
CHM1_1	10	104,787,480 - 104,859,267 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	103,629,750 - 103,702,045 (+)	NCBI		T2T-CHM13v2.0

Wbp1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	46,587,545 - 46,645,828 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	46,587,523 - 46,645,828 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	46,599,106 - 46,657,389 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	46,599,084 - 46,657,389 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	46,673,596 - 46,731,879 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	46,652,462 - 46,710,695 (+)	NCBI		MGSCv36	mm8
Celera	19	47,368,513 - 47,427,378 (+)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	38.97	NCBI

Wbp1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	7,655,221 - 7,710,402 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955485	7,655,921 - 7,710,387 (-)	NCBI	ChiLan1.0	ChiLan1.0

WBP1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	114,626,341 - 114,701,529 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	114,631,664 - 114,709,192 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	99,342,361 - 99,417,504 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	102,806,022 - 102,880,936 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	102,806,022 - 102,880,936 (+)	Ensembl	panpan1.1		panPan2

WBP1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	15,218,883 - 15,285,211 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	15,218,775 - 15,282,416 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	15,390,531 - 15,457,068 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	15,692,716 - 15,759,145 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	15,692,628 - 15,759,302 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	15,236,791 - 15,303,124 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	15,276,617 - 15,342,954 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	15,408,932 - 15,475,528 (+)	NCBI		UU_Cfam_GSD_1.0

Wbp1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	31,508,772 - 31,565,911 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936600	3,111,377 - 3,125,244 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WBP1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	113,737,763 - 113,800,555 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	113,737,758 - 113,800,564 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	123,706,973 - 123,768,054 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WBP1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	95,780,039 - 95,855,013 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	95,811,108 - 95,855,426 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	56,890,456 - 56,966,762 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wbp1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624831	2,097,047 - 2,152,943 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624831	2,096,948 - 2,155,516 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	349
Count of miRNA genes:	211
Interacting mature miRNAs:	257
Transcripts:	ENSRNOT00000027118
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
2316896	Gluco57	Glucose level QTL 57	7.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	238398865	255849249	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

D1Mit31

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	255,421,704 - 255,421,883 (+)	Marker Load Pipeline
mRatBN7.2	1	245,480,298 - 245,480,477 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,366,728 - 266,366,906	NCBI	Rnor6.0
Rnor_5.0	1	273,797,070 - 273,797,248	UniSTS	Rnor5.0
RGSC_v3.4	1	251,909,559 - 251,909,738	RGD	RGSC3.4
RGSC_v3.4	1	251,909,560 - 251,909,738	UniSTS	RGSC3.4
RGSC_v3.1	1	252,172,554 - 252,172,900	RGD
Celera	1	241,266,211 - 241,266,386	UniSTS
FHH x ACI Map	1	129.1899	UniSTS
FHH x ACI Map	1	129.1899	RGD
Cytogenetic Map	1	q54	UniSTS

AU048745

Rat Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	q32	UniSTS
Cytogenetic Map	13	q24	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	17	p12	UniSTS
Cytogenetic Map	16	p14	UniSTS
Cytogenetic Map	13	q26	UniSTS
Cytogenetic Map	10	q22	UniSTS
Cytogenetic Map	7	q11	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	5	q21	UniSTS
Cytogenetic Map	4	q24	UniSTS
Cytogenetic Map	2	q11	UniSTS
Cytogenetic Map	1	q54	UniSTS
Cytogenetic Map	1	q36	UniSTS
Cytogenetic Map	18	p11	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	10	q24	UniSTS
Cytogenetic Map	8	q31	UniSTS
Cytogenetic Map	3	q21	UniSTS
Cytogenetic Map	13	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS
Cytogenetic Map	11	q23	UniSTS
Cytogenetic Map	10	q31	UniSTS
Cytogenetic Map	16	q12.2	UniSTS
Cytogenetic Map	3	q24	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	3	p13	UniSTS

RH130988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	255,469,644 - 255,469,832 (+)	Marker Load Pipeline
mRatBN7.2	1	245,528,245 - 245,528,433 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,414,915 - 266,415,102	NCBI	Rnor6.0
Rnor_5.0	1	273,844,951 - 273,845,138	UniSTS	Rnor5.0
RGSC_v3.4	1	251,958,218 - 251,958,405	UniSTS	RGSC3.4
Celera	1	241,314,071 - 241,314,258	UniSTS
Cytogenetic Map	1	q54	UniSTS

AI535167

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	255,448,883 - 255,449,563 (+)	Marker Load Pipeline
mRatBN7.2	1	245,507,481 - 245,508,161 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,393,907 - 266,394,586	NCBI	Rnor6.0
Rnor_5.0	1	273,824,249 - 273,824,928	UniSTS	Rnor5.0
RGSC_v3.4	1	251,936,739 - 251,937,418	UniSTS	RGSC3.4
Celera	1	241,293,378 - 241,294,057	UniSTS
RH 3.4 Map	1	1619.9	UniSTS
Cytogenetic Map	1	q54	UniSTS

RH124715

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	245,528,414 - 245,528,603 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	266,415,084 - 266,415,272	NCBI	Rnor6.0
Rnor_5.0	1	273,845,120 - 273,845,308	UniSTS	Rnor5.0
RGSC_v3.4	1	251,958,387 - 251,958,575	UniSTS	RGSC3.4
Celera	1	241,314,240 - 241,314,428	UniSTS
Cytogenetic Map	1	q54	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001313908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U43563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027118 ⟹ ENSRNOP00000027118

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,472,296 - 245,528,627 (+)	Ensembl
Rnor_6.0 Ensembl	1	266,358,728 - 266,415,296 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080509 ⟹ ENSRNOP00000075316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	266,380,973 - 266,412,893 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100128 ⟹ ENSRNOP00000077540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,514,781 - 245,528,627 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110025 ⟹ ENSRNOP00000095179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,493,499 - 245,528,627 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116056 ⟹ ENSRNOP00000082448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	245,493,628 - 245,528,627 (+)	Ensembl

RefSeq Acc Id:

NM_001127484 ⟹ NP_001120956

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,413,705 - 255,470,026 (+)	NCBI
mRatBN7.2	1	245,472,296 - 245,528,627 (+)	NCBI
Rnor_6.0	1	266,358,728 - 266,415,296 (+)	NCBI
Rnor_5.0	1	273,789,070 - 273,845,332 (+)	NCBI
RGSC_v3.4	1	251,901,560 - 251,958,599 (+)	RGD
Celera	1	241,258,195 - 241,314,452 (+)	RGD

Sequence:

show sequence

GCGAAACAGGAAAAGAAGGGAAGAAGGAAGCAGAGGGAAGAAGAGAGGGAGGAGGAGGGGTGGC
GGCGCCGTGGCGGAGGAGCAGGAGCAGGAGGGGGATGGAGAGGAGAAGGCTCCTGGGTGGCATG
GCGCTCCTGCTCCTCCAGGCGCTGCCCAGCCCCCTGTCAGTGAGGGCTGAGCCCCCGCAGGATA
AGGAAGCCTGTGTGGGCACCAACAATCAAAGCTACATCTGTGACACGGGACACTGCTGTGGACA
GGCTCAGTGCTGCAGCCACTACTATGAACTCTGGTGGTTCTGGCTGGTGTGGACCATCATCATC
ATCCTGAGCTGCTGCTGTGTCTGCCACCACCGCAGAGCCAAGCACCGCCTTCAGGCCCAGCAGC
GGCAACATGAAATCAACCTGATCGCCTACCGGGAAGCCCACAATTACTCAGCATTGCCGTTTTA
CTTCAGGTTTTTGCCAAACTATTTACTACCTCCTTATGAGGAAGTGGTGAACCGACCTCCGACT
CCTCCCCCACCGTACAGTGCCTTCCAGCTACAACAGCAGCAGCTGCTGCCTCCCCAGGGTGGCC
CTGCAGGCGGCAGCCCCCCAGGCGCTGACCAGCCCCAGGGCTCCCAGGGAGCACAGAGCAGTCC
TTTGTCTGGACCGAGCAGAAGCAGCACTAGACCCCCAAGTGTCGCAGATCCTCAGTCCCTCGAA
GTGCCCACTGAACGGGCAGCCACCAAAGCCCTTGGAATGGAGTCCAGTAGCTCTGTGGCCAGCC
ATGGGGAGCTGGACCCCGGGGCCTTCCTGGACAGGGATTCAGAGTGTAAGGAGGAGCTCCTGAA
AGATTCAAGTTCTGAGCATGGCGGTGCACCCCCCGACAGCAAGGACAAGACACCGGGCAGGCAT
CGCCGCTTCACAGGTGACTCGGGCATTGAGGTGTGTGTGTGCAACCGGGGCCACCACGATGATG
ACCTCAAAGAGTTTAACACACTCATAGATGATGCTCTGGATGGGCCCCTGGACTTCTGTGACAG
TTGTCATGTACGGCCTCCTGTTGACGAAGAGGAAGGGCTCTGCCTGTCCTCTGAGGGGCAGGCT
CGAGAGCATGGGCACCCCCACCTGCCACGGCCGCCTGCGTGCCTGCTGCTAAACACCATCAACG
AACAGGACTCCCCAAACTCGCAGCGCAGCAGCTCCCCCAGCTAGAACAGGCCTGCCTGCACCCC
AGAGCTTGACAGCAACCAGGGTTGGGGACACCCACAAGAGAAGCATTAAGTCATTTGTAGGGGT
GGTCCAGCCACTTTGTCCTTTTATTTTCTTCTTCCCCTCCTGTCCCACCTTGCCCACATCTCCA
GGTACAAATTCAGGGTGTGGACGCCTCCTCTCCCCACAAAAGCACAGTGTTCTAGAAGATGGAG
AAGCTGACTTGTTCCGCACCCCCCCTTTCCAGAGCTGTGTCTCACCTACCTGCTTGGCTGAGAA
ACGTGTGTTTGGAAAATCCCCGAGGACTGGGGCTGGACTGTGCCCTAAGACGGTTCTCGGTGAT
GGAGTGGATTCATAAGAGAACTGTCTCCGTCTGGGAGAGACAGTTATCTTGGCCCTGGGTGAAG
AAGGAAACCCTCTGGGGCCTGGGGATTGTGGCCACCACTGGCTACAGAGCTGGCACTGGTCTAA
TCCTGTGGGAGGGTGAGCGCTAGTGGACAGGGTGGTGAGGGACTTGTTGATTTGACAAGCCCTA
GGCGGAAAGTACACATCTGTGCATTGTGGAGGGGACCCTTCCCGGCAGGCTTTGGCCAGCTTCA
GCCTGGTTCAGGTGTAGAAGATTATATTGTTCTCTGTGTTTTCCTTTAAAAACAAGTAACAAAG
GCTAGCTGGACACAAGAACAGATTGGTGGGTAGGCAGGAACTCTTGTCTGCACAAGGGAATTCT
GCTGCTCCTCCCCAGGCTGAGTTCCCAAGAGTCTAACTATTGCTGGGCCAGGAGGAGAGAGTCT
GAACAGGCCATCCTGGGGCCTCTCTGTGAGTGGAGACCTGAAGACTGGTAGAGATCATAGCCTC
TTTCACTTCTGCCCTTTGTCCATGCCCACAGTTGATCAGTGGCCCCGGTCCCTCCTGAACACAG
CCTGTAGTCTCTGTCTCCCTGTCCTCTGTAAGCAGATGGACTGAGGAAGTTGTGTGTTCAGGAT
GAAGCAGCCTCCTAGCCTGGCTCTCACACAGTATTTCCTGTTGCGTTTGACTAAGTCTGTTGCT
TGTGTACCTGTTTGTCTTAAACTGACCACTTAGAAGGAACACCTTGGTTACCTGTGGTTCTCAT
GGCTGCCTTGCCCCTAGCCTGTTGGAGAAGCATGACTCACTTTCCTGTACAGCCTGTGCAGAGT
CACCTGGGTGGGAGTCAACATCCGCTTCCAGCAGACCTCGGGGCCTGCTTACTGTCATCTGGCC
CTGGAGCACAGAAGCCACTGAGACGAACATTCCCCACCCAGCCCTGCTCATGCAAAGAGTTGGG
TTTCTCCCCTGCTCTTGAATGACGAGGCATAGAGTTGGCACTGCCATTATGGTAAGAAAGAAAA
AAAAAAAAGGAAGAAAAACCAAGTCCATATGTAAACACAAACAGATCCAAGGCGAATGCGTGTC
TGCGTTTGGATGTCACAAACCAAAATCCTTGTCGAACAAAAGTGAAGTCTGCACAGTGATGTTG
GATGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATGTGGCCCCGAG
CCCTGTGTTCCTGTGAAGATACTTTGAATGGCCATTCTGCTCACATTAACCACATGCCTGGAGC
ACATATGGCCCTCTCAAGGTAATTTATTTTACACATTTACTGTTTACTGAACAATCGTCTGACC
GTACTCGGGTGTATTCGGCAGTCTTGTCGACGGCATTGCCTGTGTTTGCCGGGGACGCTGCCCT
CCAGGGAGAGGCTTCTTACTCAGCCCACCACTGCAGTTTGCACATTGCTCCACGGACTCAGAGG
CCTACATTCTGTTCCCTGTGCGTGGAAACATTGGGAACCAGTCTCCCTCCCTCTGCTGCTTTCA
GACAGAAGTTCGATTGAGTCTTGAGTGACAAGCATGGATGGGTCGTGGCCCAGACATCGCCCTG
CCTAGGATTACCAGGAGTCTCTGGCAGAGACCTTGGCGCCACGTTCGCACCTCATCCACCAAGG
TCCAGAGAGAGAAGAGAGGGAGCTGGTGGGTGGTCAGAGGGGCCCGAGCCACGGCCCTCCCACA
CCTTTCCGGCTACTTTCTTGGTAAAATGCCAGACACCTCACTGATGTGTGTCGGAGGAGTGAGT
TTTCCCAAAACCAACCCCTCTTTAGTTAACTGGTGGTGAGGTGGGACCCTCTCGAGTCTCTTCC
CCTTGGCAGAGTGAGGAGCTGGCCCGAGTGCTGAAGCTTTACTGAAGCACCCACCATGATGACG
GAGCCAGTCTGGCCCCTGCTGTTTCAGCCACCTTGATGCTCAGAGAGAGCACAGGAAATAGTGA
GTCAGGGGCCAGGGAGACTTGACTGAGTTGGGTTTCCAGGTTGGAGGGGTTAGGCAGAAGGCTT
GGTGCTACGGTCAGATTTGCAGCCGCTAACACATTCCTGCGTGAGGCCCACCACCGTCTGTCAG
TCATCGTGACTATGTGTATCTTAAGCAATAAGATTCAGGCTGCCCTGGGCAGTCTGCGCGACGA
TACCCTGTGCTGTGATTGTCCGGAAGACAGAGTGGCTCCAACCACTGTGAGAAACCCCAATAAA
ATCCGTCTCAAGTGTTGTACG

hide sequence

RefSeq Acc Id:

NM_001313908 ⟹ NP_001300837

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,434,902 - 255,470,026 (+)	NCBI
mRatBN7.2	1	245,493,499 - 245,528,627 (+)	NCBI
Rnor_6.0	1	266,379,925 - 266,415,296 (+)	NCBI
Celera	1	241,279,392 - 241,314,452 (+)	NCBI

Sequence:

show sequence

AACTGATGTCATTTCCCCCTTGGCAGACAGCTTGGGCTGTGCTGCGTCTGAGCTATGTCACGAG
AAGGTGGGGGTGGGTCGGGGCCAGGCGGGGGGAGTAGTGAGGAGAGCCGGCGGCCTGCTGGGTC
CCAGGACTCTGTTTACTTTTCTCTTCTTTGCTCTGGAAGACCAGGGAACTGAGAGCACCGAGCT
GAGCAGCTGGCCCTCCACGGGCCATGCTCACTCGAAGACCTTAAAGACCTTAACTTTCAAGAGC
CCTTTGTTGCTAGCGTTAGAGGACGATGCTCCTGCAGGATGCCTTTCCTTTGGGGGCTTAGACA
GGATAAGGAAGCCTGTGTGGGCACCAACAATCAAAGCTACATCTGTGACACGGGACACTGCTGT
GGACAGGCTCAGTGCTGCAGCCACTACTATGAACTCTGGTGTAAGTCCTTGTCCAGGGGGTTCT
TGGCATCCCAGGGTCCCGGTTACTGCCTCTGCTCCTTGGGAAACCGCGGGCTGGCCAGCCTTTT
CTGATTCTCTTGGGGACAGTGTTGGGTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTG
CTGCTGTGTCTGCCACCACCGCAGAGCCAAGCACCGCCTTCAGGCCCAGCAGCGGCAACATGAA
ATCAACCTGATCGCCTACCGGGAAGCCCACAATTACTCAGCATTGCCGTTTTACTTCAGGTTTT
TGCCAAACTATTTACTACCTCCTTATGAGGAAGTGGTGAACCGACCTCCGACTCCTCCCCCACC
GTACAGTGCCTTCCAGCTACAACAGCAGCAGCTGCTGCCTCCCCAGGGTGGCCCTGCAGGCGGC
AGCCCCCCAGGCGCTGACCAGCCCCAGGGCTCCCAGGGAGCACAGAGCAGTCCTTTGTCTGGAC
CGAGCAGAAGCAGCACTAGACCCCCAAGTGTCGCAGATCCTCAGTCCCTCGAAGTGCCCACTGA
ACGGGCAGCCACCAAAGCCCTTGGAATGGAGTCCAGTAGCTCTGTGGCCAGCCATGGGGAGCTG
GACCCCGGGGCCTTCCTGGACAGGGATTCAGAGTGTAAGGAGGAGCTCCTGAAAGATTCAAGTT
CTGAGCATGGCGGTGCACCCCCCGACAGCAAGGACAAGACACCGGGCAGGCATCGCCGCTTCAC
AGGTGACTCGGGCATTGAGGTGTGTGTGTGCAACCGGGGCCACCACGATGATGACCTCAAAGAG
TTTAACACACTCATAGATGATGCTCTGGATGGGCCCCTGGACTTCTGTGACAGTTGTCATGTAC
GGCCTCCTGTTGACGAAGAGGAAGGGCTCTGCCTGTCCTCTGAGGGGCAGGCTCGAGAGCATGG
GCACCCCCACCTGCCACGGCCGCCTGCGTGCCTGCTGCTAAACACCATCAACGAACAGGACTCC
CCAAACTCGCAGCGCAGCAGCTCCCCCAGCTAGAACAGGCCTGCCTGCACCCCAGAGCTTGACA
GCAACCAGGGTTGGGGACACCCACAAGAGAAGCATTAAGTCATTTGTAGGGGTGGTCCAGCCAC
TTTGTCCTTTTATTTTCTTCTTCCCCTCCTGTCCCACCTTGCCCACATCTCCAGGTACAAATTC
AGGGTGTGGACGCCTCCTCTCCCCACAAAAGCACAGTGTTCTAGAAGATGGAGAAGCTGACTTG
TTCCGCACCCCCCCTTTCCAGAGCTGTGTCTCACCTACCTGCTTGGCTGAGAAACGTGTGTTTG
GAAAATCCCCGAGGACTGGGGCTGGACTGTGCCCTAAGACGGTTCTCGGTGATGGAGTGGATTC
ATAAGAGAACTGTCTCCGTCTGGGAGAGACAGTTATCTTGGCCCTGGGTGAAGAAGGAAACCCT
CTGGGGCCTGGGGATTGTGGCCACCACTGGCTACAGAGCTGGCACTGGTCTAATCCTGTGGGAG
GGTGAGCGCTAGTGGACAGGGTGGTGAGGGACTTGTTGATTTGACAAGCCCTAGGCGGAAAGTA
CACATCTGTGCATTGTGGAGGGGACCCTTCCCGGCAGGCTTTGGCCAGCTTCAGCCTGGTTCAG
GTGTAGAAGATTATATTGTTCTCTGTGTTTTCCTTTAAAAACAAGTAACAAAGGCTAGCTGGAC
ACAAGAACAGATTGGTGGGTAGGCAGGAACTCTTGTCTGCACAAGGGAATTCTGCTGCTCCTCC
CCAGGCTGAGTTCCCAAGAGTCTAACTATTGCTGGGCCAGGAGGAGAGAGTCTGAACAGGCCAT
CCTGGGGCCTCTCTGTGAGTGGAGACCTGAAGACTGGTAGAGATCATAGCCTCTTTCACTTCTG
CCCTTTGTCCATGCCCACAGTTGATCAGTGGCCCCGGTCCCTCCTGAACACAGCCTGTAGTCTC
TGTCTCCCTGTCCTCTGTAAGCAGATGGACTGAGGAAGTTGTGTGTTCAGGATGAAGCAGCCTC
CTAGCCTGGCTCTCACACAGTATTTCCTGTTGCGTTTGACTAAGTCTGTTGCTTGTGTACCTGT
TTGTCTTAAACTGACCACTTAGAAGGAACACCTTGGTTACCTGTGGTTCTCATGGCTGCCTTGC
CCCTAGCCTGTTGGAGAAGCATGACTCACTTTCCTGTACAGCCTGTGCAGAGTCACCTGGGTGG
GAGTCAACATCCGCTTCCAGCAGACCTCGGGGCCTGCTTACTGTCATCTGGCCCTGGAGCACAG
AAGCCACTGAGACGAACATTCCCCACCCAGCCCTGCTCATGCAAAGAGTTGGGTTTCTCCCCTG
CTCTTGAATGACGAGGCATAGAGTTGGCACTGCCATTATGGTAAGAAAGAAAAAAAAAAAAGGA
AGAAAAACCAAGTCCATATGTAAACACAAACAGATCCAAGGCGAATGCGTGTCTGCGTTTGGAT
GTCACAAACCAAAATCCTTGTCGAACAAAAGTGAAGTCTGCACAGTGATGTTGGATGGCGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATGTGGCCCCGAGCCCTGTGTTCC
TGTGAAGATACTTTGAATGGCCATTCTGCTCACATTAACCACATGCCTGGAGCACATATGGCCC
TCTCAAGGTAATTTATTTTACACATTTACTGTTTACTGAACAATCGTCTGACCGTACTCGGGTG
TATTCGGCAGTCTTGTCGACGGCATTGCCTGTGTTTGCCGGGGACGCTGCCCTCCAGGGAGAGG
CTTCTTACTCAGCCCACCACTGCAGTTTGCACATTGCTCCACGGACTCAGAGGCCTACATTCTG
TTCCCTGTGCGTGGAAACATTGGGAACCAGTCTCCCTCCCTCTGCTGCTTTCAGACAGAAGTTC
GATTGAGTCTTGAGTGACAAGCATGGATGGGTCGTGGCCCAGACATCGCCCTGCCTAGGATTAC
CAGGAGTCTCTGGCAGAGACCTTGGCGCCACGTTCGCACCTCATCCACCAAGGTCCAGAGAGAG
AAGAGAGGGAGCTGGTGGGTGGTCAGAGGGGCCCGAGCCACGGCCCTCCCACACCTTTCCGGCT
ACTTTCTTGGTAAAATGCCAGACACCTCACTGATGTGTGTCGGAGGAGTGAGTTTTCCCAAAAC
CAACCCCTCTTTAGTTAACTGGTGGTGAGGTGGGACCCTCTCGAGTCTCTTCCCCTTGGCAGAG
TGAGGAGCTGGCCCGAGTGCTGAAGCTTTACTGAAGCACCCACCATGATGACGGAGCCAGTCTG
GCCCCTGCTGTTTCAGCCACCTTGATGCTCAGAGAGAGCACAGGAAATAGTGAGTCAGGGGCCA
GGGAGACTTGACTGAGTTGGGTTTCCAGGTTGGAGGGGTTAGGCAGAAGGCTTGGTGCTACGGT
CAGATTTGCAGCCGCTAACACATTCCTGCGTGAGGCCCACCACCGTCTGTCAGTCATCGTGACT
ATGTGTATCTTAAGCAATAAGATTCAGGCTGCCCTGGGCAGTCTGCGCGACGATACCCTGTGCT
GTGATTGTCCGGAAGACAGAGTGGCTCCAACCACTGTGAGAAACCCCAATAAAATCCGTCTCAA
GTGTTGTACG

hide sequence

RefSeq Acc Id:

XM_006231508 ⟹ XP_006231570

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,433,090 - 255,470,024 (+)	NCBI
mRatBN7.2	1	245,493,589 - 245,528,625 (+)	NCBI
Rnor_6.0	1	266,378,052 - 266,415,294 (+)	NCBI
Rnor_5.0	1	273,789,070 - 273,845,332 (+)	NCBI

Sequence:

show sequence

AAACCTGTAATCCCAGCATTTGGGAGGTAGAGGCAGGACATCCTTGCTAAGTAGTGAGTTGAAA
GCCAGTATGGATTATTTGATATCCTGCCTCAACCCCACTCCTGTCCAACAAGCAGAAGAATGCA
GTAATTCTGTAGCCCATCAAAGCAAGGCAGGGGGTTACGTAATGGCATCCCTGGCGCTGGGAAC
GGTGTCTGGCACACTGTGGGTGGTCAGTGGGTGTGAGAGATAACAGGGAACATTTACATCTTGG
CACTCCTTCCTGAGAGCTGCAGGTGCCTGTCTGCCCTGTTAGATCAGTACAGACTAGAGTTGCC
CAGGAGAGACCAGAGACATATTTCCTACAGTTTGCTTGCCAAAGTTAAATTGTATTTCATGTGT
TTTCTGGTTCCCAGTGGTTGCCAGGAAACTGAGGAAATGAGGGGAAGGGGTTGAGAGCCAGCTC
ACTGGTCTTTTGTGGCCTCGGAGCCCTGATGTCCAGTCCCATCTGTCTGGTAGCTCAGCCTGTT
TTGTGAGGGCGTGGGTCCAGACCCCCGTGGAGACCACCACGCTGCATCAGCCTTTTGTTTTCTC
AGCAATAAAGTTGGGCTCTGCCATTACGTGAGCCTCCAGTAATGGCTCAGCCTGCTTGGCCCTA
TTCATTTTCTTGTCAGGAAAGTCGATGTGACCTTGACCATCAGCTATGATCTACAGCAGGCACA
CGGTGTCTGGTTGGAGTCTAACGGTCAGGGAGCAAGTGTGGCACCTTACTGTGCTCGGTGCTGT
GCACTGCTGATTTTCCTCCTAGGTGGGTTGGAGATGGCCATTTGCAGAAATCCTTTTTGGCTTA
CAGGGGTCATGCCCAGCAGTGTCACTGTCTTGGAGGCCTTTGGTAAGGATCACTGAGGGAGAAG
AATCGCAGGAAATTAGACAAAGATGAACCATGTGGACTCTTGAGGGAGACGTAGTGGATTTGAA
GTCCAAGTTACTAAAAAGTGACTTTGTTCCCTTTTAAAACTGTGGTAGAGTCGGTGCTGAGCTG
GGGATGTGGTGTAGCCCAGCCGGAGAGCCCTTGTCAAGGATGGTGGGGGCAGCATGAGTTCAAT
CTCAGATCACACACACACCCAGTGGAGTTATTTCTGCAAATCCACACCCAAATGTGGAGCTCGT
GAGCTGGCTTTGGTGTGGGATTCAGATCGGGGGAGTGCTCCTGATGGTGCTCCACAGGACGATC
AGGACACTGACCCCCCTCCTACCCCAGGGGCTGTGTTTCTTTGGCAAAGTTTGCTGGTTGTCTC
TGAGAACCAAACTTAGGTCAAATCTAAGGGAGCGAAGCTTTTCTGAACCGAGTTGGTTTAAATA
TAGCTGCTGTGAAGTAGTGGTCGACTGGAGGGCGTGGCGGGACCTGCCGTACCCTTTGTAAGGC
AAGTGAGGAAAGATGCTGGCGCCTGGACGTAGGCACCCAGTTTGTTTATGAAACATAAAGTCCC
CTGTGCAGCAGGGAGCCCAGAGCGGCAGCCAAGCTTACTACCTGAGCTGGGAGAGACGCCTCTC
CAGGCCCCTTCTGCATTTGCCTCTTCCCCGAGAAGTTGGGGGCACCCAGCTATTGTTTCTTGAG
CATTGCCACTGATTGCCAGGGTGAAGAAAAGTTTCTTCGAAACCTGACAGTCGCCAGGCTCGAA
TTTCTTTCCTGAGGAGAAACAGTACCTCGGGATCTAGTCCTTAGGCAGAGAAGCTCAGCTCCCT
TTAGTTTCCCCAGACTTGATTTTGTCGGTCCGAGCAGGGAGAGCCTTCAAGCCCCGCTCTAGGT
TGGTGCTGGCATCATGGCTTCACTCACTGCACATCCTCCGTGTTCCTCAGCAGCTGTCTGAAGT
TTTCTCTGCTATGCCTGAACTGATGTCATTTCCCCCTTGGCAGACAGCTTGGGCTGTGCTGCGT
CTGAGCTATGTCACGAGAAGGTGGGGGTGGGTCGGGGCCAGGCGGGGGGAGTAGTGAGGAGAGC
CGGCGGCCTGCTGGGTCCCAGGACTCTGTTTACTTTTCTCTTCTTTGCTCTGGAAGACCAGGGA
ACTGAGAGCACCGAGCTGAGCAGCTGGCCCTCCACGGGCCATGCTCACTCGAAGACCTTAAAGA
CCTTAACTTTCAAGAGCCCTTTGTTGCTAGCGTTAGAGGACGATGCTCCTGCAGGATGCCTTTC
CTTTGGGGGCTTAGACAGGATAAGGAAGCCTGTGTGGGCACCAACAATCAAAGCTACATCTGTG
ACACGGGACACTGCTGTGGACAGGCTCAGTGCTGCAGCCACTACTATGAACTCTGGTGGTTCTG
GCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTCTGCCACCACCGCAGAGCCAAG
CACCGCCTTCAGGCCCAGCAGCGGCAACATGAAATCAACCTGATCGCCTACCGGGAAGCCCACA
ATTACTCAGCATTGCCGTTTTACTTCAGGTTTTTGCCAAACTATTTACTACCTCCTTATGAGGA
AGTGGTGAACCGACCTCCGACTCCTCCCCCACCGTACAGTGCCTTCCAGCTACAACAGCAGCAG
CTGCTGCCTCCCCAGGGTGGCCCTGCAGGCGGCAGCCCCCCAGGCGCTGACCAGCCCCAGGGCT
CCCAGGGAGCACAGAGCAGTCCTTTGTCTGGACCGAGCAGAAGCAGCACTAGACCCCCAAGTGT
CGCAGATCCTCAGTCCCTCGAAGTGCCCACTGAACGGGCAGCCACCAAAGCCCTTGGAATGGAG
TCCAGTAGCTCTGTGGCCAGCCATGGGGAGCTGGACCCCGGGGCCTTCCTGGACAGGGATTCAG
AGTGTAAGGAGGAGCTCCTGAAAGATTCAAGTTCTGAGCATGGCGGTGCACCCCCCGACAGCAA
GGACAAGACACCGGGCAGGCATCGCCGCTTCACAGGTGACTCGGGCATTGAGGTGTGTGTGTGC
AACCGGGGCCACCACGATGATGACCTCAAAGAGTTTAACACACTCATAGATGATGCTCTGGATG
GGCCCCTGGACTTCTGTGACAGTTGTCATGTACGGCCTCCTGTTGACGAAGAGGAAGGGCTCTG
CCTGTCCTCTGAGGGGCAGGCTCGAGAGCATGGGCACCCCCACCTGCCACGGCCGCCTGCGTGC
CTGCTGCTAAACACCATCAACGAACAGGACTCCCCAAACTCGCAGCGCAGCAGCTCCCCCAGCT
AGAACAGGCCTGCCTGCACCCCAGAGCTTGACAGCAACCAGGGTTGGGGACACCCACAAGAGAA
GCATTAAGTCATTTGTAGGGGTGGTCCAGCCACTTTGTCCTTTTATTTTCTTCTTCCCCTCCTG
TCCCACCTTGCCCACATCTCCAGGTACAAATTCAGGGTGTGGACGCCTCCTCTCCCCACAAAAG
CACAGTGTTCTAGAAGATGGAGAAGCTGACTTGTTCCGCACCCCCCCTTTCCAGAGCTGTGTCT
CACCTACCTGCTTGGCTGAGAAACGTGTGTTTGGAAAATCCCCGAGGACTGGGGCTGGACTGTG
CCCTAAGACGGTTCTCGGTGATGGAGTGGATTCATAAGAGAACTGTCTCCGTCTGGGAGAGACA
GTTATCTTGGCCCTGGGTGAAGAAGGAAACCCTCTGGGGCCTGGGGATTGTGGCCACCACTGGC
TACAGAGCTGGCACTGGTCTAATCCTGTGGGAGGGTGAGCGCTAGTGGACAGGGTGGTGAGGGA
CTTGTTGATTTGACAAGCCCTAGGCGGAAAGTACACATCTGTGCATTGTGGAGGGGACCCTTCC
CGGCAGGCTTTGGCCAGCTTCAGCCTGGTTCAGGTGTAGAAGATTATATTGTTCTCTGTGTTTT
CCTTTAAAAACAAGTAACAAAGGCTAGCTGGACACAAGAACAGATTGGTGGGTAGGCAGGAACT
CTTGTCTGCACAAGGGAATTCTGCTGCTCCTCCCCAGGCTGAGTTCCCAAGAGTCTAACTATTG
CTGGGCCAGGAGGAGAGAGTCTGAACAGGCCATCCTGGGGCCTCTCTGTGAGTGGAGACCTGAA
GACTGGTAGAGATCATAGCCTCTTTCACTTCTGCCCTTTGTCCATGCCCACAGTTGATCAGTGG
CCCCGGTCCCTCCTGAACACAGCCTGTAGTCTCTGTCTCCCTGTCCTCTGTAAGCAGATGGACT
GAGGAAGTTGTGTGTTCAGGATGAAGCAGCCTCCTAGCCTGGCTCTCACACAGTATTTCCTGTT
GCGTTTGACTAAGTCTGTTGCTTGTGTACCTGTTTGTCTTAAACTGACCACTTAGAAGGAACAC
CTTGGTTACCTGTGGTTCTCATGGCTGCCTTGCCCCTAGCCTGTTGGAGAAGCATGACTCACTT
TCCTGTACAGCCTGTGCAGAGTCACCTGGGTGGGAGTCAACATCCGCTTCCAGCAGACCTCGGG
GCCTGCTTACTGTCATCTGGCCCTGGAGCACAGAAGCCACTGAGACGAACATTCCCCACCCAGC
CCTGCTCATGCAAAGAGTTGGGTTTCTCCCCTGCTCTTGAATGACGAGGCATAGAGTTGGCACT
GCCATTATGGTAAGAAAGAAAAAAAAAAAAGGAAGAAAAACCAAGTCCATATGTAAACACAAAC
AGATCCAAGGCGAATGCGTGTCTGCGTTTGGATGTCACAAACCAAAATCCTTGTCGAACAAAAG
TGAAGTCTGCACAGTGATGTTGGATGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGGTATGTGGCCCCGAGCCCTGTGTTCCTGTGAAGATACTTTGAATGGCCATTCTGCTC
ACATTAACCACATGCCTGGAGCACATATGGCCCTCTCAAGGTAATTTATTTTACACATTTACTG
TTTACTGAACAATCGTCTGACCGTACTCGGGTGTATTCGGCAGTCTTGTCGACGGCATTGCCTG
TGTTTGCCGGGGACGCTGCCCTCCAGGGAGAGGCTTCTTACTCAGCCCACCACTGCAGTTTGCA
CATTGCTCCACGGACTCAGAGGCCTACATTCTGTTCCCTGTGCGTGGAAACATTGGGAACCAGT
CTCCCTCCCTCTGCTGCTTTCAGACAGAAGTTCGATTGAGTCTTGAGTGACAAGCATGGATGGG
TCGTGGCCCAGACATCGCCCTGCCTAGGATTACCAGGAGTCTCTGGCAGAGACCTTGGCGCCAC
GTTCGCACCTCATCCACCAAGGTCCAGAGAGAGAAGAGAGGGAGCTGGTGGGTGGTCAGAGGGG
CCCGAGCCACGGCCCTCCCACACCTTTCCGGCTACTTTCTTGGTAAAATGCCAGACACCTCACT
GATGTGTGTCGGAGGAGTGAGTTTTCCCAAAACCAACCCCTCTTTAGTTAACTGGTGGTGAGGT
GGGACCCTCTCGAGTCTCTTCCCCTTGGCAGAGTGAGGAGCTGGCCCGAGTGCTGAAGCTTTAC
TGAAGCACCCACCATGATGACGGAGCCAGTCTGGCCCCTGCTGTTTCAGCCACCTTGATGCTCA
GAGAGAGCACAGGAAATAGTGAGTCAGGGGCCAGGGAGACTTGACTGAGTTGGGTTTCCAGGTT
GGAGGGGTTAGGCAGAAGGCTTGGTGCTACGGTCAGATTTGCAGCCGCTAACACATTCCTGCGT
GAGGCCCACCACCGTCTGTCAGTCATCGTGACTATGTGTATCTTAAGCAATAAGATTCAGGCTG
CCCTGGGCAGTCTGCGCGACGATACCCTGTGCTGTGATTGTCCGGAAGACAGAGTGGCTCCAAC
CACTGTGAGAAACCCCAATAAAATCCGTCTCAAGTGTTGTA

hide sequence

RefSeq Acc Id:

XM_017589294 ⟹ XP_017444783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,435,947 - 255,470,024 (+)	NCBI
mRatBN7.2	1	245,494,544 - 245,528,625 (+)	NCBI
Rnor_6.0	1	266,378,051 - 266,415,294 (+)	NCBI

Sequence:

show sequence

CAAACCTGTAATCCCAGCATTTGGGAGGTAGAGGCAGGACATCCTTGCTAAGTAGTGAGTTGAA
AGCCAGTATGGATTATTTGATATCCTGCCTCAACCCCACTCCTGTCCAACAAGCAGAAGAATGC
AGTAATTCTGTAGCCCATCAAAGCAAGGCAGGGGGTTACGTAATGGCATCCCTGGCGCTGGGAA
CGGTGTCTGGCACACTGTGGGTGGTCAGTGGGTGTGAGAGATAACAGGGAACATTTACATCTTG
GCACTCCTTCCTGAGAGCTGCAGGTGCCTGTCTGCCCTGTTAGATCAGTACAGACTAGAGTTGC
CCAGGAGAGACCAGAGACATATTTCCTACAGTTTGCTTGCCAAAGTTAAATTGTATTTCATGTG
TTTTCTGGTTCCCAGTGGTTGCCAGGAAACTGAGGAAATGAGGGGAAGGGGTTGAGAGCCAGCT
CACTGGTCTTTTGTGGCCTCGGAGCCCTGATGTCCAGTCCCATCTGTCTGGTAGCTCAGCCTGT
TTTGTGAGGGCGTGGGTCCAGACCCCCGTGGAGACCACCACGCTGCATCAGCCTTTTGTTTTCT
CAGCAATAAAGTTGGGCTCTGCCATTACGTGAGCCTCCAGTAATGGCTCAGCCTGCTTGGCCCT
ATTCATTTTCTTGTCAGGAAAGTCGATGTGACCTTGACCATCAGCTATGATCTACAGCAGGCAC
ACGGTGTCTGGTTGGAGTCTAACGGTCAGGGAGCAAGTGTGGCACCTTACTGTGCTCGGTGCTG
TGCACTGCTGATTTTCCTCCTAGGTGGGTTGGAGATGGCCATTTGCAGAAATCCTTTTTGGCTT
ACAGGGGTCATGCCCAGCAGTGTCACTGTCTTGGAGGCCTTTGGTAAGGATCACTGAGGGAGAA
GAATCGCAGGAAATTAGACAAAGATGAACCATGTGGACTCTTGAGGGAGACGTAGTGGATTTGA
AGTCCAAGTTACTAAAAAGTGACTTTGTTCCCTTTTAAAACTGTGGTAGAGTCGGTGCTGAGCT
GGGGATGTGGTGTAGCCCAGCCGGAGAGCCCTTGTCAAGGATGGTGGGGGCAGCATGAGTTCAA
TCTCAGATCACACACACACCCAGTGGAGTTATTTCTGCAAATCCACACCCAAATGTGGAGCTCG
TGAGCTGGCTTTGGTGTGGGATTCAGATCGGGGGAGTGCTCCTGATGGTGCTCCACAGGACGAT
CAGGACACTGACCCCCCTCCTACCCCAGGGGCTGTGTTTCTTTGGCAAAGTTTGCTGGTTGTCT
CTGAGAACCAAACTTAGGTCAAATCTAAGGGAGCGAAGCTTTTCTGAACCGAGTTGGTTTAAAT
ATAGCTGCTGTGAAGTAGTGGTCGACTGGAGGGCGTGGCGGGACCTGCCGTACCCTTTGTAAGG
CAAGTGAGGAAAGATGCTGGCGCCTGGACGTAGGCACCCAGTTTGTTTATGAAACATAAAGTCC
CCTGTGCAGCAGGGAGCCCAGAGCGGCAGCCAAGCTTACTACCTGAGCTGGGAGAGACGCCTCT
CCAGGCCCCTTCTGCATTTGCCTCTTCCCCGAGAAGTTGGGGGCACCCAGCTATTGTTTCTTGA
GCATTGCCACTGATTGCCAGGGTGAAGAAAAGTTTCTTCGAAACCTGACAGTCGCCAGGCTCGA
ATTTCTTTCCTGAGGAGAAACAGTACCTCGGGATCTAGTCCTTAGGCAGAGAAGCTCAGCTCCC
TTTAGTTTCCCCAGACTTGATTTTGTCGGTCCGAGCAGGGAGAGCCTTCAAGCCCCGCTCTAGG
TTGGTGCTGGCATCATGGCTTCACTCACTGCACATCCTCCGTGTTCCTCAGCAGCTGTCTGAAG
TTTTCTCTGCTATGCCTGAACTGATGTCATTTCCCCCTTGGCAGACAGCTTGGGCTGTGCTGCG
TCTGAGCTATGTCACGAGAAGGTGGGGGTGGGTCGGGGCCAGGCGGGGGGAGTAGTGAGGAGAG
CCGGCGGCCTGCTGGGTCCCAGGACTCTGTTTACTTTTCTCTTCTTTGCTCTGGAAGACCAGGG
AACTGAGAGCACCGAGCTGAGCAGCTGGCCCTCCACGGGCCATGCTCACTCGAAGACCTTAAAG
ACCTTAACTTTCAAGAGCCCTTTGTTGCTAGCGTTAGAGGACGATGCTCCTGCAGGATGCCTTT
CCTTTGGGGGCTTAGACAGGGCTTCTGAGAGCCTGACACCCCACCCCCTCCTTGGTCTGAGAGG
CATGTCTATATCGAAATGTGAAACTGTACCCAGCAGCAGGGCTGCAGGAGGCACGCAGCCTCCG
CCACCAGCCTCCAGAAGAGGCAGAGCCATGGTGAGCTCAGACCCCAAGTCAGAAGGGAGCCCAG
AGGGCCAGCTGGTTACTCTCTGAGCAGAGTACAAGGATAAGGAAGCCTGTGTGGGCACCAACAA
TCAAAGCTACATCTGTGACACGGGACACTGCTGTGGACAGGCTCAGTGCTGCAGCCACTACTAT
GAACTCTGGTGTAAGTCCTTGTCCAGGGGGTTCTTGGCATCCCAGGGTCCCGGTTACTGCCTCT
GCTCCTTGGGAAACCGCGGGCTGGCCAGCCTTTTCTGATTCTCTTGGGGACAGTGTTGGGTTCT
GGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTCTGCCACCACCGCAGAGCCAA
GCACCGCCTTCAGGCCCAGCAGCGGCAACATGAAATCAACCTGATCGCCTACCGGGAAGCCCAC
AATTACTCAGCATTGCCGTTTTACTTCAGGTTTTTGCCAAACTATTTACTACCTCCTTATGAGG
AAGTGGTGAACCGACCTCCGACTCCTCCCCCACCGTACAGTGCCTTCCAGCTACAACAGCAGCA
GCTGCTGCCTCCCCAGGGTGGCCCTGCAGGCGGCAGCCCCCCAGGCGCTGACCAGCCCCAGGGC
TCCCAGGGAGCACAGAGCAGTCCTTTGTCTGGACCGAGCAGAAGCAGCACTAGACCCCCAAGTG
TCGCAGATCCTCAGTCCCTCGAAGTGCCCACTGAACGGGCAGCCACCAAAGCCCTTGGAATGGA
GTCCAGTAGCTCTGTGGCCAGCCATGGGGAGCTGGACCCCGGGGCCTTCCTGGACAGGGATTCA
GAGTGTAAGGAGGAGCTCCTGAAAGATTCAAGTTCTGAGCATGGCGGTGCACCCCCCGACAGCA
AGGACAAGACACCGGGCAGGCATCGCCGCTTCACAGGTGACTCGGGCATTGAGGTGTGTGTGTG
CAACCGGGGCCACCACGATGATGACCTCAAAGAGTTTAACACACTCATAGATGATGCTCTGGAT
GGGCCCCTGGACTTCTGTGACAGTTGTCATGTACGGCCTCCTGTTGACGAAGAGGAAGGGCTCT
GCCTGTCCTCTGAGGGGCAGGCTCGAGAGCATGGGCACCCCCACCTGCCACGGCCGCCTGCGTG
CCTGCTGCTAAACACCATCAACGAACAGGACTCCCCAAACTCGCAGCGCAGCAGCTCCCCCAGC
TAGAACAGGCCTGCCTGCACCCCAGAGCTTGACAGCAACCAGGGTTGGGGACACCCACAAGAGA
AGCATTAAGTCATTTGTAGGGGTGGTCCAGCCACTTTGTCCTTTTATTTTCTTCTTCCCCTCCT
GTCCCACCTTGCCCACATCTCCAGGTACAAATTCAGGGTGTGGACGCCTCCTCTCCCCACAAAA
GCACAGTGTTCTAGAAGATGGAGAAGCTGACTTGTTCCGCACCCCCCCTTTCCAGAGCTGTGTC
TCACCTACCTGCTTGGCTGAGAAACGTGTGTTTGGAAAATCCCCGAGGACTGGGGCTGGACTGT
GCCCTAAGACGGTTCTCGGTGATGGAGTGGATTCATAAGAGAACTGTCTCCGTCTGGGAGAGAC
AGTTATCTTGGCCCTGGGTGAAGAAGGAAACCCTCTGGGGCCTGGGGATTGTGGCCACCACTGG
CTACAGAGCTGGCACTGGTCTAATCCTGTGGGAGGGTGAGCGCTAGTGGACAGGGTGGTGAGGG
ACTTGTTGATTTGACAAGCCCTAGGCGGAAAGTACACATCTGTGCATTGTGGAGGGGACCCTTC
CCGGCAGGCTTTGGCCAGCTTCAGCCTGGTTCAGGTGTAGAAGATTATATTGTTCTCTGTGTTT
TCCTTTAAAAACAAGTAACAAAGGCTAGCTGGACACAAGAACAGATTGGTGGGTAGGCAGGAAC
TCTTGTCTGCACAAGGGAATTCTGCTGCTCCTCCCCAGGCTGAGTTCCCAAGAGTCTAACTATT
GCTGGGCCAGGAGGAGAGAGTCTGAACAGGCCATCCTGGGGCCTCTCTGTGAGTGGAGACCTGA
AGACTGGTAGAGATCATAGCCTCTTTCACTTCTGCCCTTTGTCCATGCCCACAGTTGATCAGTG
GCCCCGGTCCCTCCTGAACACAGCCTGTAGTCTCTGTCTCCCTGTCCTCTGTAAGCAGATGGAC
TGAGGAAGTTGTGTGTTCAGGATGAAGCAGCCTCCTAGCCTGGCTCTCACACAGTATTTCCTGT
TGCGTTTGACTAAGTCTGTTGCTTGTGTACCTGTTTGTCTTAAACTGACCACTTAGAAGGAACA
CCTTGGTTACCTGTGGTTCTCATGGCTGCCTTGCCCCTAGCCTGTTGGAGAAGCATGACTCACT
TTCCTGTACAGCCTGTGCAGAGTCACCTGGGTGGGAGTCAACATCCGCTTCCAGCAGACCTCGG
GGCCTGCTTACTGTCATCTGGCCCTGGAGCACAGAAGCCACTGAGACGAACATTCCCCACCCAG
CCCTGCTCATGCAAAGAGTTGGGTTTCTCCCCTGCTCTTGAATGACGAGGCATAGAGTTGGCAC
TGCCATTATGGTAAGAAAGAAAAAAAAAAAAGGAAGAAAAACCAAGTCCATATGTAAACACAAA
CAGATCCAAGGCGAATGCGTGTCTGCGTTTGGATGTCACAAACCAAAATCCTTGTCGAACAAAA
GTGAAGTCTGCACAGTGATGTTGGATGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGGTATGTGGCCCCGAGCCCTGTGTTCCTGTGAAGATACTTTGAATGGCCATTCTGCT
CACATTAACCACATGCCTGGAGCACATATGGCCCTCTCAAGGTAATTTATTTTACACATTTACT
GTTTACTGAACAATCGTCTGACCGTACTCGGGTGTATTCGGCAGTCTTGTCGACGGCATTGCCT
GTGTTTGCCGGGGACGCTGCCCTCCAGGGAGAGGCTTCTTACTCAGCCCACCACTGCAGTTTGC
ACATTGCTCCACGGACTCAGAGGCCTACATTCTGTTCCCTGTGCGTGGAAACATTGGGAACCAG
TCTCCCTCCCTCTGCTGCTTTCAGACAGAAGTTCGATTGAGTCTTGAGTGACAAGCATGGATGG
GTCGTGGCCCAGACATCGCCCTGCCTAGGATTACCAGGAGTCTCTGGCAGAGACCTTGGCGCCA
CGTTCGCACCTCATCCACCAAGGTCCAGAGAGAGAAGAGAGGGAGCTGGTGGGTGGTCAGAGGG
GCCCGAGCCACGGCCCTCCCACACCTTTCCGGCTACTTTCTTGGTAAAATGCCAGACACCTCAC
TGATGTGTGTCGGAGGAGTGAGTTTTCCCAAAACCAACCCCTCTTTAGTTAACTGGTGGTGAGG
TGGGACCCTCTCGAGTCTCTTCCCCTTGGCAGAGTGAGGAGCTGGCCCGAGTGCTGAAGCTTTA
CTGAAGCACCCACCATGATGACGGAGCCAGTCTGGCCCCTGCTGTTTCAGCCACCTTGATGCTC
AGAGAGAGCACAGGAAATAGTGAGTCAGGGGCCAGGGAGACTTGACTGAGTTGGGTTTCCAGGT
TGGAGGGGTTAGGCAGAAGGCTTGGTGCTACGGTCAGATTTGCAGCCGCTAACACATTCCTGCG
TGAGGCCCACCACCGTCTGTCAGTCATCGTGACTATGTGTATCTTAAGCAATAAGATTCAGGCT
GCCCTGGGCAGTCTGCGCGACGATACCCTGTGCTGTGATTGTCCGGAAGACAGAGTGGCTCCAA
CCACTGTGAGAAACCCCAATAAAATCCGTCTCAAGTGTTGTA

hide sequence

RefSeq Acc Id:

XM_039080554 ⟹ XP_038936482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,413,701 - 255,470,024 (+)	NCBI
mRatBN7.2	1	245,472,292 - 245,528,625 (+)	NCBI

RefSeq Acc Id:

XM_039080560 ⟹ XP_038936488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	255,456,861 - 255,470,024 (+)	NCBI
mRatBN7.2	1	245,515,468 - 245,528,625 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001120956	(Get FASTA)	NCBI Sequence Viewer
	NP_001300837	(Get FASTA)	NCBI Sequence Viewer
	XP_006231570	(Get FASTA)	NCBI Sequence Viewer
	XP_017444783	(Get FASTA)	NCBI Sequence Viewer
	XP_038936482	(Get FASTA)	NCBI Sequence Viewer
	XP_038936488	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66754	(Get FASTA)	NCBI Sequence Viewer
	EDL94356	(Get FASTA)	NCBI Sequence Viewer
	EDL94357	(Get FASTA)	NCBI Sequence Viewer
	EDL94358	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027118.5
	ENSRNOP00000077540.1
	ENSRNOP00000082448.1
	ENSRNOP00000095179.1
GenBank Protein	P0C1G7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001120956 ⟸ NM_001127484
- Peptide Label:	isoform 1 percursor precursor
- UniProtKB:	B2RYF0 (UniProtKB/TrEMBL), A6JHN2 (UniProtKB/TrEMBL), A0A8I5ZU54 (UniProtKB/TrEMBL), F7F8B3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERRRLLGGMALLLLQALPSPLSVRAEPPQDKEACVGTNNQSYICDTGHCCGQAQCCSHYYELW WFWLVWTIIIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREAHNYSALPFYFRFLPNYLLPP YEEVVNRPPTPPPPYSAFQLQQQQLLPPQGGPAGGSPPGADQPQGSQGAQSSPLSGPSRSSTRP PSVADPQSLEVPTERAATKALGMESSSSVASHGELDPGAFLDRDSECKEELLKDSSSEHGGAPP DSKDKTPGRHRRFTGDSGIEVCVCNRGHHDDDLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEE GLCLSSEGQAREHGHPHLPRPPACLLLNTINEQDSPNSQRSSSPS hide sequence

RefSeq Acc Id:	XP_006231570 ⟸ XM_006231508
- Peptide Label:	isoform X1
- UniProtKB:	P0C1G7 (UniProtKB/Swiss-Prot), A0A8I5ZU54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPFLWGLRQDKEACVGTNNQSYICDTGHCCGQAQCCSHYYELWWFWLVWTIIIILSCCCVCHHR RAKHRLQAQQRQHEINLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQ QQQLLPPQGGPAGGSPPGADQPQGSQGAQSSPLSGPSRSSTRPPSVADPQSLEVPTERAATKAL GMESSSSVASHGELDPGAFLDRDSECKEELLKDSSSEHGGAPPDSKDKTPGRHRRFTGDSGIEV CVCNRGHHDDDLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEGQAREHGHPHLPRP PACLLLNTINEQDSPNSQRSSSPS hide sequence

RefSeq Acc Id:	NP_001300837 ⟸ NM_001313908
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6B248 (UniProtKB/TrEMBL), A0A8I5ZU54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSGVSPCPGGSWHPRVPVTASAPWETAGWPAFSDSLGDSVGFWLVWTIIIILSCCCVCHHRRA KHRLQAQQRQHEINLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQ QLLPPQGGPAGGSPPGADQPQGSQGAQSSPLSGPSRSSTRPPSVADPQSLEVPTERAATKALGM ESSSSVASHGELDPGAFLDRDSECKEELLKDSSSEHGGAPPDSKDKTPGRHRRFTGDSGIEVCV CNRGHHDDDLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEGQAREHGHPHLPRPPA CLLLNTINEQDSPNSQRSSSPS hide sequence

RefSeq Acc Id:	XP_017444783 ⟸ XM_017589294
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6B248 (UniProtKB/TrEMBL), A0A8I5ZU54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSGVSPCPGGSWHPRVPVTASAPWETAGWPAFSDSLGDSVGFWLVWTIIIILSCCCVCHHRRA KHRLQAQQRQHEINLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQ QLLPPQGGPAGGSPPGADQPQGSQGAQSSPLSGPSRSSTRPPSVADPQSLEVPTERAATKALGM ESSSSVASHGELDPGAFLDRDSECKEELLKDSSSEHGGAPPDSKDKTPGRHRRFTGDSGIEVCV CNRGHHDDDLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEGQAREHGHPHLPRPPA CLLLNTINEQDSPNSQRSSSPS hide sequence

Ensembl Acc Id:

ENSRNOP00000075316 ⟸ ENSRNOT00000080509

Ensembl Acc Id:

ENSRNOP00000027118 ⟸ ENSRNOT00000027118

RefSeq Acc Id:	XP_038936482 ⟸ XM_039080554
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6B248 (UniProtKB/TrEMBL), A0A8I5ZU54 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936488 ⟸ XM_039080560
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZU54 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000077540 ⟸ ENSRNOT00000100128

Ensembl Acc Id:

ENSRNOP00000082448 ⟸ ENSRNOT00000116056

Ensembl Acc Id:

ENSRNOP00000095179 ⟸ ENSRNOT00000110025

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P0C1G7-F1-model_v2	AlphaFold	P0C1G7	1-344	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690970

Promoter ID:

EPDNEW_R1494

Type:

initiation region

Name:

Wbp1l_1

Description:

WW domain binding protein 1-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	266,358,759 - 266,358,819	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305793	AgrOrtholog
BioCyc Gene	G2FUF-55503	BioCyc
Ensembl Genes	ENSRNOG00000020020	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027118.7	UniProtKB/TrEMBL
	ENSRNOT00000100128.1	UniProtKB/TrEMBL
	ENSRNOT00000110025.1	UniProtKB/TrEMBL
	ENSRNOT00000116056.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7929564	IMAGE-MGC_LOAD
InterPro	WBP1-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WW_domain-binding	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:309456	UniProtKB/TrEMBL
MGC_CLONE	MGC:188498	IMAGE-MGC_LOAD
NCBI Gene	309456	ENTREZGENE
PANTHER	PTHR16209	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WW DOMAIN BINDING PROTEIN 1-LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	WBP-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Wbp1l	PhenoGen
RatGTEx	ENSRNOG00000020020	RatGTEx
UniProt	A0A8I5Y6G2_RAT	UniProtKB/TrEMBL
	A0A8I5ZU54	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B248	ENTREZGENE, UniProtKB/TrEMBL
	A6JHN2	ENTREZGENE, UniProtKB/TrEMBL
	B2RYF0	ENTREZGENE
	F7F8B3	ENTREZGENE, UniProtKB/TrEMBL
	P0C1G7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	B2RYF0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Wbp1l	WW domain binding protein 1-like	RGD1305793	similar to hypothetical protein FLJ20154	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1305793	similar to hypothetical protein FLJ20154	RGD1305793_predicted	similar to hypothetical protein FLJ20154 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1305793_predicted	similar to hypothetical protein FLJ20154 (predicted)	LOC309456_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC309456_predicted	similar to hypothetical protein FLJ20154 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar