Cfap100 (cilia and flagella associated protein 100) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cfap100 (cilia and flagella associated protein 100) Rattus norvegicus
Analyze
Symbol: Cfap100
Name: cilia and flagella associated protein 100
RGD ID: 1305768
Description: Predicted to be located in cilium. Predicted to be active in ciliary basal body. Orthologous to human CFAP100 (cilia and flagella associated protein 100); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 6-propyl-2-thiouracil; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ccdc37; cilia- and flagella-associated protein 100; coiled-coil domain containing 37; coiled-coil domain-containing protein 37; hypothetical LOC297444; LOC297444; RGD1305768
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84124,471,913 - 124,495,990 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4124,472,023 - 124,495,799 (-)EnsemblGRCr8
mRatBN7.24122,914,693 - 122,938,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4122,914,698 - 122,938,580 (-)EnsemblmRatBN7.2
Rnor_6.04122,314,462 - 122,338,862 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,314,458 - 122,337,389 (-)Ensemblrn6Rnor6.0
Rnor_5.04186,855,472 - 186,880,030 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44124,661,805 - 124,685,543 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4111,838,887 - 111,863,204 (-)NCBICelera
RGSC_v3.14124,906,287 - 124,930,962 (-)NCBI
Cytogenetic Map4q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
ciliary basal body  (IBA,IEA,ISO)
cilium  (IEA)
cytoskeleton  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cfap100
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84124,471,913 - 124,495,990 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4124,472,023 - 124,495,799 (-)EnsemblGRCr8
mRatBN7.24122,914,693 - 122,938,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4122,914,698 - 122,938,580 (-)EnsemblmRatBN7.2
Rnor_6.04122,314,462 - 122,338,862 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,314,458 - 122,337,389 (-)Ensemblrn6Rnor6.0
Rnor_5.04186,855,472 - 186,880,030 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44124,661,805 - 124,685,543 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4111,838,887 - 111,863,204 (-)NCBICelera
RGSC_v3.14124,906,287 - 124,930,962 (-)NCBI
Cytogenetic Map4q34NCBI
CFAP100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383126,394,909 - 126,436,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3126,394,656 - 126,436,556 (+)Ensemblhg38GRCh38
GRCh373126,113,752 - 126,155,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,596,472 - 127,638,088 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3124,538,607 - 124,580,221 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3123,494,475 - 123,535,869 (+)NCBIHuRef
CHM1_13126,076,803 - 126,118,431 (+)NCBICHM1_1
T2T-CHM13v2.03129,127,425 - 129,169,110 (+)NCBIT2T-CHM13v2.0
Cfap100
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,380,713 - 90,412,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl690,380,461 - 90,405,779 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38690,403,731 - 90,429,768 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,403,479 - 90,428,797 (-)Ensemblmm10GRCm38
MGSCv37690,353,730 - 90,378,474 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36690,369,242 - 90,394,291 (-)NCBIMGSCv36mm8
Celera692,297,632 - 92,323,771 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.16NCBI
Cfap100
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542121,652,750 - 21,685,770 (+)Ensembl
ChiLan1.0NW_00495542121,652,655 - 21,685,866 (+)NCBIChiLan1.0ChiLan1.0
CFAP100
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,325,524 - 124,366,942 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13124,330,304 - 124,370,923 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03123,444,962 - 123,486,188 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13130,761,495 - 130,801,851 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3130,761,923 - 130,801,851 (+)EnsemblpanPan2panpan1.1
CFAP100
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.120565,571 - 619,536 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl20587,508 - 619,545 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha20600,059 - 653,725 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.020574,177 - 631,069 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl20574,257 - 631,051 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.120305,082 - 359,014 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.020631,836 - 687,728 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.020592,810 - 646,846 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cfap100
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,136,472 - 19,145,466 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936898545,534 - 553,384 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936898542,581 - 553,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP100
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl753,921,369 - 53,949,622 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1753,909,353 - 53,949,648 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2758,792,627 - 58,820,990 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP100
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12254,581,573 - 54,622,842 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2254,581,104 - 54,622,970 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041111,673,168 - 111,714,545 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap100
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624773150,205 - 205,754 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624773149,957 - 207,015 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cfap100
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1656,484,322 - 56,508,486 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cfap100
146 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:45
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000024222
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4121020385148834277Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat

Markers in Region
BE102441  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24122,914,747 - 122,914,916 (+)MAPPERmRatBN7.2
Rnor_6.04122,314,513 - 122,314,681NCBIRnor6.0
Rnor_5.04186,855,527 - 186,855,695UniSTSRnor5.0
RGSC_v3.44124,661,843 - 124,662,011UniSTSRGSC3.4
Celera4111,838,938 - 111,839,106UniSTS
RH 3.4 Map4732.82UniSTS
Cytogenetic Map4q34UniSTS
BE108019  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24122,921,619 - 122,921,776 (+)MAPPERmRatBN7.2
Rnor_6.04122,321,385 - 122,321,541NCBIRnor6.0
Rnor_5.04186,862,399 - 186,862,555UniSTSRnor5.0
RGSC_v3.44124,668,715 - 124,668,871UniSTSRGSC3.4
Celera4111,845,810 - 111,845,966UniSTS
RH 3.4 Map4733.01UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 61 157 83 82 51 73 51 6 316 167 11 136 80 91 31 14 14

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000024222   ⟹   ENSRNOP00000024222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4124,472,023 - 124,495,799 (-)Ensembl
mRatBN7.2 Ensembl4122,914,698 - 122,938,580 (-)Ensembl
Rnor_6.0 Ensembl4122,314,458 - 122,337,389 (-)Ensembl
RefSeq Acc Id: XM_006236885   ⟹   XP_006236947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,495,984 (-)NCBI
mRatBN7.24122,914,693 - 122,938,990 (-)NCBI
Rnor_6.04122,314,462 - 122,338,862 (-)NCBI
Rnor_5.04186,855,472 - 186,880,030 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006236886   ⟹   XP_006236948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,495,984 (-)NCBI
mRatBN7.24122,914,693 - 122,938,990 (-)NCBI
Rnor_6.04122,314,462 - 122,338,861 (-)NCBI
Rnor_5.04186,855,472 - 186,880,030 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593020   ⟹   XP_017448509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,495,984 (-)NCBI
mRatBN7.24122,914,693 - 122,938,990 (-)NCBI
Rnor_6.04122,314,462 - 122,338,862 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108740   ⟹   XP_038964668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,495,984 (-)NCBI
mRatBN7.24122,914,693 - 122,938,990 (-)NCBI
RefSeq Acc Id: XM_039108741   ⟹   XP_038964669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,495,984 (-)NCBI
mRatBN7.24122,914,693 - 122,938,990 (-)NCBI
RefSeq Acc Id: XM_039108742   ⟹   XP_038964670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,495,984 (-)NCBI
mRatBN7.24122,914,693 - 122,938,990 (-)NCBI
RefSeq Acc Id: XM_039108743   ⟹   XP_038964671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,495,983 (-)NCBI
mRatBN7.24122,914,693 - 122,938,990 (-)NCBI
RefSeq Acc Id: XM_039108744   ⟹   XP_038964672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,494,740 (-)NCBI
mRatBN7.24122,914,693 - 122,937,532 (-)NCBI
RefSeq Acc Id: XM_039108745   ⟹   XP_038964673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,495,984 (-)NCBI
mRatBN7.24122,914,693 - 122,938,990 (-)NCBI
RefSeq Acc Id: XM_039108746   ⟹   XP_038964674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,471,913 - 124,483,605 (-)NCBI
mRatBN7.24122,914,693 - 122,926,391 (-)NCBI
RefSeq Acc Id: XM_039108747   ⟹   XP_038964675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,477,364 - 124,495,989 (-)NCBI
mRatBN7.24122,920,154 - 122,938,993 (-)NCBI
RefSeq Acc Id: XM_063286970   ⟹   XP_063143040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,474,208 - 124,495,990 (-)NCBI
RefSeq Acc Id: XM_063286971   ⟹   XP_063143041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,474,165 - 124,495,988 (-)NCBI
RefSeq Acc Id: XR_005503731
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,475,075 - 124,495,989 (-)NCBI
mRatBN7.24122,917,867 - 122,938,993 (-)NCBI
RefSeq Acc Id: XR_005503732
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84124,474,233 - 124,495,989 (-)NCBI
mRatBN7.24122,917,035 - 122,938,993 (-)NCBI
RefSeq Acc Id: XP_006236948   ⟸   XM_006236886
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006236947   ⟸   XM_006236885
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448509   ⟸   XM_017593020
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000024222   ⟸   ENSRNOT00000024222
RefSeq Acc Id: XP_038964670   ⟸   XM_039108742
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038964668   ⟸   XM_039108740
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038964669   ⟸   XM_039108741
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038964673   ⟸   XM_039108745
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038964671   ⟸   XM_039108743
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038964672   ⟸   XM_039108744
- Peptide Label: isoform X5
- UniProtKB: A6IB79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964674   ⟸   XM_039108746
- Peptide Label: isoform X8
- UniProtKB: A6IB79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964675   ⟸   XM_039108747
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063143041   ⟸   XM_063286971
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063143040   ⟸   XM_063286970
- Peptide Label: isoform X7
Protein Domains
DUF4200

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEI2-F1-model_v2 AlphaFold D3ZEI2 1-611 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305768 AgrOrtholog
BioCyc Gene G2FUF-43733 BioCyc
Ensembl Genes ENSRNOG00000017959 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024222 ENTREZGENE
  ENSRNOT00000024222.9 UniProtKB/TrEMBL
InterPro CFAP_domain-containing UniProtKB/TrEMBL
  DUF4200 UniProtKB/TrEMBL
NCBI Gene 297444 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 100 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF4200 UniProtKB/TrEMBL
PhenoGen Cfap100 PhenoGen
RatGTEx ENSRNOG00000017959 RatGTEx
UniProt A6IB79 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEI2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-26 Cfap100  cilia and flagella associated protein 100  Ccdc37  coiled-coil domain containing 37  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ccdc37  coiled-coil domain containing 37   Ccdc37_predicted  coiled-coil domain containing 37 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Ccdc37_predicted  coiled-coil domain containing 37 (predicted)  RGD1305768_predicted  hypothetical LOC297444 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1305768_predicted  hypothetical LOC297444 (predicted)  LOC297444_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC297444_predicted  hypothetical LOC297444 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL