Nudt21 (nudix hydrolase 21) - Rat Genome Database

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Gene: Nudt21 (nudix hydrolase 21) Rattus norvegicus
Analyze
Symbol: Nudt21
Name: nudix hydrolase 21
RGD ID: 1305766
Description: Predicted to enable several functions, including histone deacetylase binding activity; mRNA 3'-UTR AU-rich region binding activity; and protein homodimerization activity. Predicted to contribute to RNA binding activity. Predicted to be involved in several processes, including mRNA 3'-end processing; positive regulation of cell differentiation; and protein heterotetramerization. Predicted to be located in cytoplasm and paraspeckles. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human NUDT21 (nudix hydrolase 21); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; mRNA decay pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; Brodifacoum.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cleavage and polyadenylation specific factor 5; cleavage and polyadenylation specificity factor subunit 5; Cpsf5; LOC291877; MGC112766; nucleoside diphosphate-linked moiety X motif 21; nudix (nucleoside diphosphate linked moiety X)-type motif 21; nudix motif 21
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,980,797 - 10,996,903 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1910,980,158 - 10,999,754 (+)EnsemblGRCr8
mRatBN7.21910,974,800 - 10,993,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,974,241 - 10,991,682 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1910,942,777 - 10,958,883 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,707,948 - 11,724,054 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,994,957 - 11,011,063 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01911,451,366 - 11,470,637 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,450,760 - 11,467,644 (+)Ensemblrn6Rnor6.0
Rnor_5.01911,425,803 - 11,445,070 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41911,412,732 - 11,428,838 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1910,859,554 - 10,875,542 (+)NCBICelera
RGSC_v3.11911,417,524 - 11,433,663 (+)NCBI
Cytogenetic Map19p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Pre-mRNA 3'-end processing complex assembly and function. Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors. Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8626397   PMID:15169763   PMID:15489334   PMID:15937220   PMID:16189514   PMID:16854843   PMID:17098938   PMID:17172643   PMID:18032416   PMID:19864460   PMID:20479262   PMID:20695905  
PMID:21295486   PMID:22658674   PMID:22681889   PMID:22898046   PMID:23187700   PMID:25416956   PMID:29249356   PMID:29276085   PMID:31505169   PMID:32357304  


Genomics

Comparative Map Data
Nudt21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,980,797 - 10,996,903 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1910,980,158 - 10,999,754 (+)EnsemblGRCr8
mRatBN7.21910,974,800 - 10,993,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,974,241 - 10,991,682 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1910,942,777 - 10,958,883 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,707,948 - 11,724,054 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,994,957 - 11,011,063 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01911,451,366 - 11,470,637 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,450,760 - 11,467,644 (+)Ensemblrn6Rnor6.0
Rnor_5.01911,425,803 - 11,445,070 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41911,412,732 - 11,428,838 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1910,859,554 - 10,875,542 (+)NCBICelera
RGSC_v3.11911,417,524 - 11,433,663 (+)NCBI
Cytogenetic Map19p12NCBI
NUDT21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,429,133 - 56,451,332 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1656,429,133 - 56,452,199 (-)Ensemblhg38GRCh38
GRCh371656,463,045 - 56,485,244 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,020,549 - 55,042,762 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341655,020,549 - 55,042,762NCBI
Celera1640,961,067 - 40,983,280 (-)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1642,333,427 - 42,355,686 (-)NCBIHuRef
CHM1_11657,870,031 - 57,892,257 (-)NCBICHM1_1
T2T-CHM13v2.01662,224,204 - 62,246,406 (-)NCBIT2T-CHM13v2.0
Nudt21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39894,746,031 - 94,763,667 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl894,742,124 - 94,763,659 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38894,019,403 - 94,037,039 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,015,496 - 94,037,031 (-)Ensemblmm10GRCm38
MGSCv37896,543,303 - 96,560,939 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36896,904,625 - 96,926,127 (-)NCBIMGSCv36mm8
Celera898,350,103 - 98,368,292 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.05NCBI
Nudt21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,216,974 - 14,234,611 (-)Ensembl
ChiLan1.0NW_00495543314,220,356 - 14,234,423 (-)NCBIChiLan1.0ChiLan1.0
NUDT21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21865,910,844 - 65,932,911 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11671,829,666 - 71,851,763 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01636,715,373 - 36,737,593 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11655,847,736 - 55,870,008 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1655,851,302 - 55,869,856 (-)EnsemblpanPan2panpan1.1
NUDT21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,736,739 - 59,751,967 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,736,186 - 59,751,704 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha256,370,400 - 56,385,642 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0260,281,802 - 60,297,027 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl260,281,258 - 60,300,793 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1257,111,554 - 57,127,338 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0258,120,996 - 58,136,199 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,013,956 - 59,029,188 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nudt21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,829,905 - 50,847,259 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364758,741,821 - 8,759,223 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364758,739,992 - 8,759,165 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDT21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl629,339,841 - 29,363,312 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1629,339,893 - 29,359,596 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NUDT21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1542,340,717 - 42,360,844 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl542,337,873 - 42,360,817 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604734,004,021 - 34,024,515 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nudt21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624757114,844 - 130,097 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624757115,249 - 130,775 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nudt21
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v117928,387 - 948,151 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nudt21
109 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:100
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000026297
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131969901Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127361636Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124694445Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat

Markers in Region
RH137029  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map50.0UniSTS
Cytogenetic Map19p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026297   ⟹   ENSRNOP00000026297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1910,980,158 - 10,994,096 (+)Ensembl
mRatBN7.2 Ensembl1910,974,241 - 10,990,852 (+)Ensembl
Rnor_6.0 Ensembl1911,450,760 - 11,467,644 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096044   ⟹   ENSRNOP00000084456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,974,241 - 10,991,682 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111115   ⟹   ENSRNOP00000082117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,975,136 - 10,990,987 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000150195   ⟹   ENSRNOP00000103396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1910,980,729 - 10,999,751 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000158959   ⟹   ENSRNOP00000099169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1910,980,729 - 10,999,754 (+)Ensembl
RefSeq Acc Id: NM_001039004   ⟹   NP_001034093
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,980,797 - 10,996,903 (+)NCBI
mRatBN7.21910,974,880 - 10,990,988 (+)NCBI
Rnor_6.01911,451,399 - 11,467,784 (+)NCBI
Rnor_5.01911,425,803 - 11,445,070 (+)NCBI
RGSC_v3.41911,412,732 - 11,428,838 (+)RGD
Celera1910,859,554 - 10,875,542 (+)RGD
Sequence:
RefSeq Acc Id: XM_063277860   ⟹   XP_063133930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,980,860 - 10,996,644 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001034093 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133930 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98748 (Get FASTA)   NCBI Sequence Viewer  
  AAI68149 (Get FASTA)   NCBI Sequence Viewer  
  EDL87356 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026297.5
  ENSRNOP00000099169
  ENSRNOP00000103396
GenBank Protein Q4KM65 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001034093   ⟸   NM_001039004
- UniProtKB: Q4KM65 (UniProtKB/Swiss-Prot),   B4F764 (UniProtKB/TrEMBL),   A0A8I5ZTF0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026297   ⟸   ENSRNOT00000026297
Ensembl Acc Id: ENSRNOP00000084456   ⟸   ENSRNOT00000096044
Ensembl Acc Id: ENSRNOP00000082117   ⟸   ENSRNOT00000111115
RefSeq Acc Id: XP_063133930   ⟸   XM_063277860
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000103396   ⟸   ENSRNOT00000150195
Ensembl Acc Id: ENSRNOP00000099169   ⟸   ENSRNOT00000158959
Protein Domains
Nudix hydrolase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KM65-F1-model_v2 AlphaFold Q4KM65 1-227 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700954
Promoter ID:EPDNEW_R11478
Type:multiple initiation site
Name:Nudt21_1
Description:nudix hydrolase 21
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01911,451,353 - 11,451,413EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305766 AgrOrtholog
BioCyc Gene G2FUF-6469 BioCyc
Ensembl Genes ENSRNOG00000042983 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000026297.7 UniProtKB/Swiss-Prot
  ENSRNOT00000150195 ENTREZGENE
  ENSRNOT00000158959 ENTREZGENE
Gene3D-CATH Nucleoside Triphosphate Pyrophosphohydrolase UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7365565 IMAGE-MGC_LOAD
InterPro Cleav_polyA_spec_factor_su5 UniProtKB/Swiss-Prot
  NUDIX_hydrolase-like_dom_sf UniProtKB/Swiss-Prot
  NUDIX_hydrolase_dom UniProtKB/Swiss-Prot
KEGG Report rno:291877 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112766 IMAGE-MGC_LOAD
NCBI Gene 291877 ENTREZGENE
PANTHER PTHR13047 UniProtKB/Swiss-Prot
Pfam NUDIX_2 UniProtKB/Swiss-Prot
PhenoGen Nudt21 PhenoGen
PIRSF CPSF-25 UniProtKB/Swiss-Prot
PROSITE NUDIX UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000042983 RatGTEx
Superfamily-SCOP SSF55811 UniProtKB/Swiss-Prot
UniProt A0A8I5ZTF0 ENTREZGENE
  A0ABK0KX28_RAT UniProtKB/TrEMBL
  A0ABK0LD78_RAT UniProtKB/TrEMBL
  B4F764 ENTREZGENE, UniProtKB/TrEMBL
  CPSF5_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-20 Nudt21  nudix hydrolase 21  Nudt21  nudix (nucleoside diphosphate linked moiety X)-type motif 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Nudt21  nudix (nucleoside diphosphate linked moiety X)-type motif 21  Cpsf5  cleavage and polyadenylation specific factor 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cpsf5  cleavage and polyadenylation specific factor 5  Cpsf5_predicted  cleavage and polyadenylation specific factor 5 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cpsf5_predicted  cleavage and polyadenylation specific factor 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED