Hbq1 (hemoglobin, theta 1) - Rat Genome Database

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Gene: Hbq1 (hemoglobin, theta 1) Rattus norvegicus
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Symbol: Hbq1
Name: hemoglobin, theta 1
RGD ID: 1305765
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: hemoglobin subunit theta-1; hemoglobin, theta T1; LOC100362686; LOC303007; pseudo theta 2 globin
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,813,635 - 15,814,508 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21015,309,173 - 15,310,046 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01015,574,813 - 15,587,426 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01015,469,907 - 15,470,540 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,556,379 - 15,557,012 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1014,976,866 - 14,977,499 (-)NCBICelera
RGSC_v3.11015,582,838 - 15,583,472 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10196478   PMID:21873635  


Genomics

Variants

.
Variants in Hbq1
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101576223019737486Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_039087122   ⟹   XP_038943050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21015,309,168 - 15,310,046 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-25713 BioCyc
NCBI Gene 303007 ENTREZGENE
PhenoGen Hbq1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hbq1  hemoglobin, theta 1  LOC100362686  hemoglobin, theta T1  Data merged from RGD:2324272 737654 PROVISIONAL
2010-05-06 LOC100362686  hemoglobin, theta T1      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Hbq1  hemoglobin, theta 1   Hbq1_predicted  hemoglobin, theta 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Hbq1_predicted  hemoglobin, theta 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED