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Gene: Ttpal (alpha tocopherol transfer protein like) Rattus norvegicus

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Symbol:

Ttpal

Name:

alpha tocopherol transfer protein like

RGD ID:

1305754

Description:

Predicted to enable phosphatidylinositol bisphosphate binding activity. Predicted to be involved in lysosome organization. Predicted to be located in clathrin-coated vesicle. Orthologous to human TTPAL (alpha tocopherol transfer protein like); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

alpha-tocopherol transfer protein-like; LOC296349; RGD1305754; similar to 3110080A02Rik protein; tocopherol (alpha) transfer protein-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TTPAL (alpha tocopherol transfer protein like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Ttpal (tocopherol (alpha) transfer protein-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ttpal (alpha tocopherol transfer protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TTPAL (alpha tocopherol transfer protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TTPAL (alpha tocopherol transfer protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ttpal (alpha tocopherol transfer protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TTPAL (alpha tocopherol transfer protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TTPAL (alpha tocopherol transfer protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ttpal (alpha tocopherol transfer protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ttpal (alpha tocopherol transfer protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TTPAL (alpha tocopherol transfer protein like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ttpal (tocopherol (alpha) transfer protein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ttpal (tocopherol (alpha) transfer protein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10026	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG10237	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10237	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG31636	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG33514	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG5958	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5958	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5973	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5973	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ttpal	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ttpal	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	172,697,683 - 172,715,973 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	172,697,729 - 172,715,983 (+)	Ensembl				GRCr8
mRatBN7.2	3	152,278,246 - 152,296,550 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	152,278,303 - 152,296,513 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	156,085,784 - 156,104,005 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	164,584,724 - 164,602,945 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	162,328,838 - 162,347,046 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	159,995,013 - 160,015,314 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	159,995,064 - 160,013,274 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	166,185,880 - 166,204,154 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	154,516,213 - 154,534,434 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	150,930,821 - 150,949,353 (+)	NCBI		Celera
RGSC_v3.1	3	154,422,217 - 154,438,005 (+)	NCBI
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

crotonaldehyde (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

ethanol (ISO)

ferric oxide (ISO)

gallic acid (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

indometacin (ISO)

inulin (ISO)

iron dichloride (ISO)

leflunomide (ISO)

methamphetamine (ISO)

nitrates (ISO)

orphenadrine (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (EXP,ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lysosome organization (IEA)

Cellular Component

clathrin-coated vesicle (IEA)

Molecular Function

phosphatidylinositol bisphosphate binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19946888

Genomics

Comparative Map Data

Ttpal
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	172,697,683 - 172,715,973 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	172,697,729 - 172,715,983 (+)	Ensembl				GRCr8
mRatBN7.2	3	152,278,246 - 152,296,550 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	152,278,303 - 152,296,513 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	156,085,784 - 156,104,005 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	164,584,724 - 164,602,945 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	162,328,838 - 162,347,046 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	159,995,013 - 160,015,314 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	159,995,064 - 160,013,274 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	166,185,880 - 166,204,154 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	154,516,213 - 154,534,434 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	150,930,821 - 150,949,353 (+)	NCBI		Celera
RGSC_v3.1	3	154,422,217 - 154,438,005 (+)	NCBI
Cytogenetic Map	3	q42	NCBI

TTPAL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	44,475,874 - 44,494,603 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	44,470,527 - 44,494,604 (+)	Ensembl			hg38	GRCh38
GRCh37	20	43,104,514 - 43,123,244 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	42,537,961 - 42,556,658 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	42,537,960 - 42,552,626	NCBI
Celera	20	39,813,199 - 39,831,891 (+)	NCBI		Celera
Cytogenetic Map	20	q13.12	NCBI
HuRef	20	39,846,000 - 39,864,717 (+)	NCBI		HuRef
CHM1_1	20	43,007,638 - 43,026,352 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	46,211,640 - 46,230,370 (+)	NCBI		T2T-CHM13v2.0

Ttpal
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	163,444,206 - 163,460,933 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	163,444,234 - 163,460,933 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	163,602,285 - 163,619,013 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	163,602,314 - 163,619,013 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	163,428,050 - 163,444,749 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	163,293,767 - 163,310,454 (+)	NCBI		MGSCv36	mm8
Celera	2	169,545,697 - 169,562,397 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	84.37	NCBI

Ttpal
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	12,871,355 - 12,897,733 (-)	Ensembl
ChiLan1.0	NW_004955445	12,871,355 - 12,897,733 (-)	NCBI	ChiLan1.0	ChiLan1.0

TTPAL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	50,208,196 - 50,226,960 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	50,201,299 - 50,220,063 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	40,805,683 - 40,824,455 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	41,900,050 - 41,918,796 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	41,900,178 - 41,913,741 (+)	Ensembl			panPan2	panpan1.1

TTPAL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	31,920,499 - 31,958,799 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	31,944,626 - 31,955,439 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	31,561,935 - 31,600,148 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	32,627,015 - 32,665,370 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	32,650,600 - 32,665,356 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	31,889,724 - 31,927,923 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	32,003,060 - 32,041,705 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	32,544,903 - 32,583,117 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ttpal
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	180,927,454 - 180,947,985 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	2,358,204 - 2,373,859 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	2,358,199 - 2,373,837 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTPAL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	46,884,977 - 46,902,359 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	46,884,881 - 46,906,827 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	52,372,646 - 52,387,844 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTPAL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	19,330,917 - 19,345,688 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	19,331,990 - 19,345,681 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	67,996,219 - 68,015,156 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttpal
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	9,989,546 - 10,004,122 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	9,986,075 - 9,999,838 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ttpal
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	154,346,617 - 154,362,562 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	358
Count of miRNA genes:	229
Interacting mature miRNAs:	265
Transcripts:	ENSRNOT00000012606
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	166376089	177728348	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161799493	176036425	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Markers in Region

RH132888

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	152,279,518 - 152,279,699 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	159,996,280 - 159,996,460	NCBI	Rnor6.0
Rnor_5.0	3	166,187,123 - 166,187,303	UniSTS	Rnor5.0
RGSC_v3.4	3	154,517,429 - 154,517,609	UniSTS	RGSC3.4
Celera	3	150,932,037 - 150,932,217	UniSTS
RH 3.4 Map	3	1376.5	UniSTS
Cytogenetic Map	3	q42	UniSTS

BM389879

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	152,295,684 - 152,295,838 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	160,012,446 - 160,012,599	NCBI	Rnor6.0
Rnor_5.0	3	166,203,289 - 166,203,442	UniSTS	Rnor5.0
RGSC_v3.4	3	154,533,595 - 154,533,748	UniSTS	RGSC3.4
Celera	3	150,948,514 - 150,948,667	UniSTS
RH 3.4 Map	3	1374.0	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012606 ⟹ ENSRNOP00000012607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	172,697,729 - 172,715,983 (+)	Ensembl
mRatBN7.2 Ensembl	3	152,278,303 - 152,296,513 (+)	Ensembl
Rnor_6.0 Ensembl	3	159,995,064 - 160,013,274 (+)	Ensembl

RefSeq Acc Id:

NM_001106537 ⟹ NP_001100007

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	172,697,739 - 172,715,960 (+)	NCBI
mRatBN7.2	3	152,278,303 - 152,296,524 (+)	NCBI
Rnor_6.0	3	159,995,064 - 160,013,285 (+)	NCBI
Rnor_5.0	3	166,185,880 - 166,204,154 (+)	NCBI
RGSC_v3.4	3	154,516,213 - 154,534,434 (+)	RGD
Celera	3	150,930,821 - 150,949,353 (+)	RGD

Sequence:

show sequence

GTCTGTTCTGCGCGCTCTGCCAGCCGAGGCTCCTGCCGCTGTGACCCGCGCTCCGCCCGCCGCC
GGGCCGGGACCCTGATAGCTAATGTCAGAAGAAAGTGACTCTGTGAGAACCAGCCCCTCTGTGG
CCTCACTCTCCGAAAATGAGCTGCCACCGCCTCCCCCGGAACCTCCCGGCTACGTGTGCTCGCT
GACAGAAGACTTGGTCACCAAGGCCAGGGAAGAGCTTCAGGAGAAGCCCGAGTGGAGACTCCGG
GATGTGCAGGCCCTTCGAGACATGGTACGGAAGGAGTACCCATACCTGAGTACATCGCTGGATG
ATGCCTTCCTGTTGCGCTTTCTGAGGGCCCGAAAGTTTGATTATGACCGGGCCCTGCAGCTGCT
GGTCAACTACCATGGCTGCAGGCGGAGCTGGCCAGAGGTCTTCAGCAACCTGAGGCCATCAGCC
CTGAAAGACGTTCTTAACTCTGGATTCCTCACAGTGCTGCCCCACACAGACCCCAGGGGCTGCC
ATGTCCTCTGCATCCGACCAGACAGATGGATACCGAGCAACTACCCGATCACCGAGAACATCCG
CGCCATCTACTTGACGTTAGAAAAACTCATTCAGTCCGAGGAGACCCAGGTGAACGGGGTTGTA
ATCCTCGCCGACTACAAGGGAGTGAGCTTATCAAAGGCGTCTCACTTTGGCCCCTTTATCGCCA
GAAAGGTGATTGGCATCCTTCAGGATGGCTTCCCCATTCGGATAAAAGCAGTTCACATAGTAAA
CGAACCTCGGATATTTAAGGGCATTTTCGCCATCATAAAACCATTTCTGAAGGAGAAAATTGCA
AACAGGTTCTTCCTCCATGGGTCTGACCTGAGCTCTCTGCACACGAGCCTTCCAAGGAATATCC
TCCCCAAAGAGTATGGGGGCACCGCTGGGGAGCTGGACACTGCCAGCTGGAACGCGGTGCTGCT
GGCCTCGGAGGATGATTTTGTGAAAGAGTTCTGCCAGCCTGAGTCTGGCTGCGATGGTCTCTTG
GGCCAGCCCCTGCTGCCTGAGGGGCTGATCTCAGACGCGCAGTGTGACGACTCCATGCGAGCCA
TGAAGTCCCAGCTCTACTCCTGCTATTAGCCCTCTTCCGGGAGAATCACCATGTGTAATTCCTT
CCTTCTTCGAATGCACAGGCTGAAGATGCCAGGACCTCGGTCTTGCTCCATCACAGTGCAGCAC
GGAGCTGCCTGCAGAGATTTAAGGAGAGCCCATCACAGGCAGACCTCTGACCAGCTAGGTTATT
CCAAGAAGACATGGAAATTGCCCTGGTGATTCCCAGATGTCTGTACTCTAAGTCTGCAACTGTT
ACTCTGGAAGCTGCATCTGTTTCTTATGCATCTTGGAAAGAACTAGGGTCAAAGTCACTCTGAA
GTGACCAGGAGTAGACAACTTGATTGATCATGAGTCTGAAACAATTGCCAATCCTGAAAGGTGG
CCATGCGTGAGACTTTGAGTCTCTTTCCCATAAACTGTAGGTGTTGACTACTGCTGCTTATCTG
CAAAGGTCAGGGTTCAGGCCCCAGTTGGCATTGCTGGGTCTGGGAAGCACTGCTAACTGAGTGG
TAGAAACGCCAGGCCCAGGCAGCACTTAAAGGTTAAAGGTCAAATTTGGAAGCTAAGGCTATAA
ATCATCCTGGGTTCCAGGCTTAAATCTTGCAATGGACACTCTCCCCAAACCCATAAAGCCTTAG
CTCTGGTTCTCCATGGAATCATGCAGGTCAACATAAAATACTGGATTCTTGGACTGCGTGGCTA
AAAGCACTTAGACTAGGAGTCCAGTGTGTGACTGGATGGATAGGGGCCTCAGCTTGTCAACTCT
AAGTTAGGCTCCATGGAATGAAGGCCTTGGGGGCTGCTCAAGTTCTGTTAGGTTTCTGCTTGGA
AAGATGACCACCTGGAGGTGGCCGGGCCTTTTTGGTTTGGCTTGGTTTTGTGTTATAGACACAA
GCCTTATGGAAAGGAACCGTCTGGCCTTTAAAGAAATTACTATGTTCCTGGGAGTTGGTGGTAA
CCAGCTGCTTTTGCAGAATGATGGGTGAACTGGAAAGGGATGGCTTTTGTGAGGCTGACCAAGT
CTTGTACGCGGATGTTGTACAGATTCCTCCCACACCGGAGACATTCGTACTATATTAGAAACAG
CCACGGACTTGTGCTCTTTCAGTTTGTGTCCCTGGAAACATACGGGGGGCAGGCTGTTGCTGGT
TCACCTGGGGGCCCTGCCCTCCCAGACACGGGAGTGCTTGTCTAGCGTGGGAGGGCCAGTTGGC
CAGATTGTTAGCTCTGCGTTGGGGTGTCGTAGACAACTGACAGGATTTTAGCCTTAACCCAAGC
ACTGAGTGAGGTGATTTTTCCCTTGGCTTTTGGCGTGTCCTTTGGTATTCACCATGTATTGTGG
TGTCAGGTAGTGTCAGGTACTGTTGGCTGTGTGTCTCCTAGACTAAGCGGGCGTTGCATACAGC
TTACATACAGTGCTTGGAGACCAAAGGTCAGTTGGTTGTTAATAAGCTGTTCCACCCTTAACAG
CACTTCCCAAAACATCACAGAAGCTCTTTATGGACACTTACCTCAATAATGCCAATTCTGGAGG
ACACTCTTTTCACCATAGATGCGAATCCTTGATCTCCTGGCTCCTGGTTGAGCTTCCGCACTGA
TACACCCTCTTGACTGCCCATCAGGGCCATTTGCTGCTGAGTTTCTGCTATTTGCTTTAGCTCC
TGGTGTTTTCTGCCTAAAGGGATGGCCACCCAGACACCTAAAAAGACCCGGGATGGCTCTCTAG
CCTTGGTGGAGAGTCTTATTAGAAGTTTTCTTTGGGGGATTGGGGATTTGGCTCAGTGGTAGAG
CGCTTGCCTGGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCTTAAAAAAAAAAAAAGTTTT
CTTTGGTAGTTGGGGAAAAGGCAGAAGGAAAAAAACAAAGGGAAAGATGAATCTCTCAGTCCTA
CCTGGTTCCCTAAATTTAAATCGTGTCATGTGACTAGTTAGTCTCTTTGACTTAACAAAGGGAC
AACCAGGTTCTTGGGGAGAAATCTCAGAGCAGAAATGTTGCCTGTTTGCTAAGCCTTTCTGGTT
AAGCCAAGAGGGAGCCATTGTATCAAGACTCTAAGGAGGCTGGATCTGTTATGTCCCCATTGCT
ACTTGTGGACTCTAGAGGACTCTTGGCACCTCAGGTTTGAAGCAGGCTGTGAGACCAGGATGTC
CTGGTGCCAAGCAACCCCACTGTTGAGCAGCAGGGGCACCATAGGCCTCAGCTAGGGGAGCGCA
CTGGTAGAGCCAGCAAGTGAGCAGGAATCTGACTTTAGGGTAAAAATCTAGACAGTTCTGACAG
CTGGAAGTCAACTTTTCCTCCATTCAAAGTCATGTGGCATTGGGAAGGGGCTAGGGAAATAGAA
GTGGGTTCCAGCTTTATCTTCCTACACAGTCTCGAGTATAGCATTAACACCGAGTGCTGGACAG
AGGTTGTCTGCTGAACACTCAATCCTGCTCCTGACTGACTCTGGAAATAAGGACATTCCACTCT
GCTTGGCGCGGAGATGCCCTAGTGTAAGAATATGGGAGTCTTCTCTTTCTCAAGTCCTCTACAG
ACTTCCAGGCAGTTCATCTTCCTAGAAAAGTATGAGTTCTGCCTTCATGTAGAAACACAGATAA
AATCTACAGAAACAACCGGAAGTGCTGGCTTCTTACGCCTTGGCTTTCTCCAGGCACAGGTGGG
TTCGACTACTCCCATTTCATCTTTGTAAGCACCTCAGGTTATAGGGCAGTTTCTTCAGAGTTGG
GGGACTGGAGCCATTCCCCCTGAATGCCTGAGGTGGCCTTACCACCTAGCAGCCAGTTTGGCCA
GCAACAGCCACACTGCTGTTATGGTATCATAATACCTCATCCTCGGGTTTCCTTCAGAAAGGAA
AATGCTAACTCAGTTGATGTAAGTGTTGCTGTGCTGGGATCCTGTCATGTGGGAGGGAACACCA
AATACACAGGCTCTCAGGAGACATCTTGCTAAGGCTTCTCTTTACTGCAGTCTGCTCACGTTGT
AAATCTGCCCTCTGTTCTCCTGACTCAGAAAGACTCAGCCACAAATGCAAGAAGCGCCATCAAA
CGTTCCTTCTCAGTGGGAACGTGCTCCACAGGAAGGTCCAGTGGGATTTGCAGCTAGAGTCACG
TTTTACTGGTTTGTGACCAAATTTACTGGTTTTCAGTTACCTGGGGTCCTATGTGTGTTTTCAA
CCTTTTCCCATCAGGCAGTTAGTAGTAGCCACTTTGGGTTCCTGTGGACGTGCCTCAGCTTCTC
GGCATAGGAACCCAACAGGTAGAATACTTGAAACTTCTCAGTGGCCAAGACCTCGATACCCTCT
CTGATGGGTGGGAACTGGGCTATTTTCCTGACCAATCTAGGCCACCATTTTAGTCCCTGGTCAC
ATTCCTTACTCCAAACTGAAATTCAGTTTGGCTTTGAGTATGTGCACACGTGGTGGGTTCACCT
ACTTCAGTGTTGACCAAAAGTTTATTTTTCTAGTGCATTTTTCTAAATGGTAAAAATATGTAAT
TTTAGTATGCATGACTGGGTCTCCAAAATAAAAAC

hide sequence

RefSeq Acc Id:

XM_006235529 ⟹ XP_006235591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	172,697,683 - 172,715,973 (+)	NCBI
mRatBN7.2	3	152,278,246 - 152,296,550 (+)	NCBI
Rnor_6.0	3	159,995,013 - 160,015,314 (+)	NCBI
Rnor_5.0	3	166,185,880 - 166,204,154 (+)	NCBI

Sequence:

show sequence

CAGAACGTCACTTCCGGCGCGAGGGCCGGGCCGGCCGGCTGTGGAGTGCGGGTCTGTTCTGCGC
GCTCTGCCAGCCGAGGCTCCTGCCGCTGTGACCCGCGCTCCGCCCGCCGCCGGGCCGCAGGGAC
CCTGATAGCTAATGTCAGAAGAAAGTGACTCTGTGAGAACCAGCCCCTCTGTGGCCTCACTCTC
CGAAAATGAGCTGCCACCGCCTCCCCCGGAACCTCCCGGCTACGTGTGCTCGCTGACAGAAGAC
TTGGTCACCAAGGCCAGGGAAGAGCTTCAGGAGAAGCCCGAGTGGAGACTCCGGGATGTGCAGG
CCCTTCGAGACATGGTACGGAAGGAGTACCCATACCTGAGTACATCGCTGGATGATGCCTTCCT
GTTGCGCTTTCTGAGGGCCCGAAAGTTTGATTATGACCGGGCCCTGCAGCTGCTGGTCAACTAC
CATGGCTGCAGGCGGAGCTGGCCAGAGGTCTTCAGCAACCTGAGGCCATCAGCCCTGAAAGACG
TTCTTAACTCTGGATTCCTCACAGTGCTGCCCCACACAGACCCCAGGGGCTGCCATGTCCTCTG
CATCCGACCAGACAGATGGATACCGAGCAACTACCCGATCACCGAGAACATCCGCGCCATCTAC
TTGACGTTAGAAAAACTCATTCAGTCCGAGGAGACCCAGGTGAACGGGGTTGTAATCCTCGCCG
ACTACAAGGGAGTGAGCTTATCAAAGGCGTCTCACTTTGGCCCCTTTATCGCCAGAAAGGTGAT
TGGCATCCTTCAGGATGGCTTCCCCATTCGGATAAAAGCAGTTCACATAGTAAACGAACCTCGG
ATATTTAAGGGCATTTTCGCCATCATAAAACCATTTCTGAAGGAGAAAATTGCAAACAGGTTCT
TCCTCCATGGGTCTGACCTGAGCTCTCTGCACACGAGCCTTCCAAGGAATATCCTCCCCAAAGA
GTATGGGGGCACCGCTGGGGAGCTGGACACTGCCAGCTGGAACGCGGTGCTGCTGGCCTCGGAG
GATGATTTTGTGAAAGAGTTCTGCCAGCCTGAGTCTGGCTGCGATGGTCTCTTGGGCCAGCCCC
TGCTGCCTGAGGGGCTGATCTCAGACGCGCAGTGTGACGACTCCATGCGAGCCATGAAGTCCCA
GCTCTACTCCTGCTATTAGCCCTCTTCCGGGAGAATCACCATGTGTAATTCCTTCCTTCTTCGA
ATGCACAGGCTGAAGATGCCAGGACCTCGGTCTTGCTCCATCACAGTGCAGCACGGAGCTGCCT
GCAGAGATTTAAGGAGAGCCCATCACAGGCAGACCTCTGACCAGCTAGGTTATTCCAAGAAGAC
ATGGAAATTGCCCTGGTGATTCCCAGATGTCTGTACTCTAAGTCTGCAACTGTTACTCTGGAAG
CTGCATCTGTTTCTTATGCATCTTGGAAAGAACTAGGGTCAAAGTCACTCTGAAGTGACCAGGA
GTAGACAACTTGATTGATCATGAGTCTGAAACAATTGCCAATCCTGAAAGGTGGCCATGCGTGA
GACTTTGAGTCTCTTTCCCATAAACTGTAGGTGTTGACTACTGCTGCTTATCTGCAAAGGTCAG
GGTTCAGGCCCCAGTTGGCATTGCTGGGTCTGGGAAGCACTGCTAACTGAGTGGTAGAAACGCC
AGGCCCAGGCAGCACTTAAAGGTTAAAGGTCAAATTTGGAAGCTAAGGCTATAAATCATCCTGG
GTTCCAGGCTTAAATCTTGCAATGGACACTCTCCCCAAACCCATAAAGCCTTAGCTCTGGTTCT
CCATGGAATCATGCAGGTCAACATAAAATACTGGATTCTTGGACTGCGTGGCTAAAAGCACTTA
GACTAGGAGTCCAGTGTGTGACTGGATGGATAGGGGCCTCAGCTTGTCAACTCTAAGTTAGGCT
CCATGGAATGAAGGCCTTGGGGGCTGCTCAAGTTCTGTTAGGTTTCTGCTTGGAAAGATGACCA
CCTGGAGGTGGCCGGGCCTTTTTGGTTTGGCTTGGTTTTGTGTTATAGACACAAGCCTTATGGA
AAGGAACCGTCTGGCCTTTAAAGAAATTACTATGTTCCTGGGAGTTGGTGGTAACCAGCTGCTT
TTGCAGAATGATGGGTGAACTGGAAAGGGATGGCTTTTGTGAGGCTGACCAAGTCTTGTACGCG
GATGTTGTACAGATTCCTCCCACACCGGAGACATTCGTACTATATTAGAAACAGCCACGGACTT
GTGCTCTTTCAGTTTGTGTCCCTGGAAACATACGGGGGGCAGGCTGTTGCTGGTTCACCTGGGG
GCCCTGCCCTCCCAGACACGGGAGTGCTTGTCTAGCGTGGGAGGGCCAGTTGGCCAGATTGTTA
GCTCTGCGTTGGGGTGTCGTAGACAACTGACAGGATTTTAGCCTTAACCCAAGCACTGAGTGAG
GTGATTTTTCCCTTGGCTTTTGGCGTGTCCTTTGGTATTCACCATGTATTGTGGTGTCAGGTAG
TGTCAGGTACTGTTGGCTGTGTGTCTCCTAGACTAAGCGGGCGTTGCATACAGCTTACATACAG
TGCTTGGAGACCAAAGGTCAGTTGGTTGTTAATAAGCTGTTCCACCCTTAACAGCACTTCCCAA
AACATCACAGAAGCTCTTTATGGACACTTACCTCAATAATGCCAATTCTGGAGGACACTCTTTT
CACCATAGATGCGAATCCTTGATCTCCTGGCTCCTGGTTGAGCTTCCGCACTGATACACCCTCT
TGACTGCCCATCAGGGCCATTTGCTGCTGAGTTTCTGCTATTTGCTTTAGCTCCTGGTGTTTTC
TGCCTAAAGGGATGGCCACCCAGACACCTAAAAAGACCCGGGATGGCTCTCTAGCCTTGGTGGA
GAGTCTTATTAGAAGTTTTCTTTGGGGGATTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTG
GCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCTTAAAAAAAAAAAAAGTTTTCTTTGGTAGT
TGGGGAAAAGGCAGAAGGAAAAAAACAAAGGGAAAGATGAATCTCTCAGTCCTACCTGGTTCCC
TAAATTTAAATCGTGTCATGTGACTAGTTAGTCTCTTTGACTTAACAAAGGGACAACCAGGTTC
TTGGGGAGAAATCTCAGAGCAGAAATGTTGCCTGTTTGCTAAGCCTTTCTGGTTAAGCCAAGAG
GGAGCCATTGTATCAAGACTCTAAGGAGGCTGGATCTGTTATGTCCCCATTGCTACTTGTGGAC
TCTAGAGGACTCTTGGCACCTCAGGTTTGAAGCAGGCTGTGAGACCAGGATGTCCTGGTGCCAA
GCAACCCCACTGTTGAGCAGCAGGGGCACCATAGGCCTCAGCTAGGGGAGCGCACTGGTAGAGC
CAGCAAGTGAGCAGGAATCTGACTTTAGGGTAAAAATCTAGACAGTTCTGACAGCTGGAAGTCA
ACTTTTCCTCCATTCAAAGTCATGTGGCATTGGGAAGGGGCTAGGGAAATAGAAGTGGGTTCCA
GCTTTATCTTCCTACACAGTCTCGAGTATAGCATTAACACCGAGTGCTGGACAGAGGTTGTCTG
CTGAACACTCAATCCTGCTCCTGACTGACTCTGGAAATAAGGACATTCCACTCTGCTTGGCGCG
GAGATGCCCTAGTGTAAGAATATGGGAGTCTTCTCTTTCTCAAGTCCTCTACAGACTTCCAGGC
AGTTCATCTTCCTAGAAAAGTATGAGTTCTGCCTTCATGTAGAAACACAGATAAAATCTACAGA
AACAACCGGAAGTGCTGGCTTCTTACGCCTTGGCTTTCTCCAGGCACAGGTGGGTTCGACTACT
CCCATTTCATCTTTGTAAGCACCTCAGGTTATAGGGCAGTTTCTTCAGAGTTGGGGGACTGGAG
CCATTCCCCCTGAATGCCTGAGGTGGCCTTACCACCTAGCAGCCAGTTTGGCCAGCAACAGCCA
CACTGCTGTTATGGTATCATAATACCTCATCCTCGGGTTTCCTTCAGAAAGGAAAATGCTAACT
CAGTTGATGTAAGTGTTGCTGTGCTGGGATCCTGTCATGTGGGAGGGAACACCAAATACACAGG
CTCTCAGGAGACATCTTGCTAAGGCTTCTCTTTACTGCAGTCTGCTCACGTTGTAAATCTGCCC
TCTGTTCTCCTGACTCAGAAAGACTCAGCCACAAATGCAAGAAGCGCCATCAAACGTTCCTTCT
CAGTGGGAACGTGCTCCACAGGAAGGTCCAGTGGGATTTGCAGCTAGAGTCACGTTTTACTGGT
TTGTGACCAAATTTACTGGTTTTCAGTTACCTGGGGTCCTATGTGTGTTTTCAACCTTTTCCCA
TCAGGCAGTTAGTAGTAGCCACTTTGGGTTCCTGTGGACGTGCCTCAGCTTCTCGGCATAGGAA
CCCAACAGGTAGAATACTTGAAACTTCTCAGTGGCCAAGACCTCGATACCCTCTCTGATGGGTG
GGAACTGGGCTATTTTCCTGACCAATCTAGGCCACCATTTTAGTCCCTGGTCACATTCCTTACT
CCAAACTGAAATTCAGTTTGGCTTTGAGTATGTGCACACGTGGTGGGTTCACCTACTTCAGTGT
TGACCAAAAGTTTATTTTTCTAGTGCATTTTTCTAAATGGTAAAAATATGTAATTTTAGTATGC
ATGACTGGGTCTCCAAAATAAAAACTGAGTGTATTGTGGTTTTGTTCTTGACCCAGGGTTTCAC
TATGTAGTCCTGGTGACCTGGATAGACCAGGTTTCCTAACCACGGGCTCAAGGGCAGCTTCCTG
CCCTACAGATGAGGTTGGGAGGGGCACTCTGGCTGCCTCTGAAGATCTCGATACCGGTTGATTG
TGAAGGGAAATGGACTGGGCTTCACACAGAAGCCATTATGCCCCTTTCAGTTCCCAAGACTGAG
GTATTTCTCTGGACTGACCCTGACTCCTTCCAATGAGAACAAAGTGTTCCTAAAGAGTTCCTGT
GGGCTGGGCATGTGTGCCAAGTACACAGAGTGCATAATCTCATTTAAATCTTCAGGCACCATGA
ATGAAGTGTATTGCCCCCTAGAGGAAAATGGGGCCCACAAATGTTCATTAGCTTGCCAAGGTCA
AAGCCAGGCAGCCCAGCTGGATCCTGCATCAGGACATGATGGAGTTTAGTGGCACACATCTCTC
TTTACACTCATGTAGCCAATCCCTGTGAAGATAGAGAGGAATCTTTCAAGCAACAATGAGCCAA
ATAAACTGGCAATGCCTTGGTCCCGGCCACTCTGGGTGAGGCTGAGGCTTGGGGTTAGACTGGA
CAATATGTCTCCATTTGATCTTAACAAAAGGCTTTAAGAAGTGAGACTCCATTCCTTAAAAATA
CAAAGTATCAGAAACTGGCTTGTTTTCTGGAAACATGTACAAATGTATAAGTGCATTTGGAGGG
TGATGGTTTTTTGTGTTAATTGGGTTTGTTTGTTTTTTGAGGCAGGGTCTTATGTAGTCCAATC
AAATCTCAAACCAGATACATTAACCAAGCATGACACTGAGTTTACAATCCTGCTTCCACACTCC
CAAGAGCTGGGGTTACCCGTGTGCTTCAATGTACATTTTTCTTTTTGGCTAAGACAAAATCTTA
CTCTTATAGTCCAGGATGACCATAATCTCAGAGCAATCCTACACCAGTCCCTCAAAGTGATGAC
ATCACAGGCACGAGCCACCAGGCCCGGCTCCTTAGGGTTCATCTCATGCACTAAGTACACATAA
TGGCTTTATTGTAACATTTCATACATGATGTAATGTATTATTTCCTTACCATCATCTCTTATCC
ACGCCCTCCCACTGATCCTATTTTCTCAACTAGTCCCTCTTCTACTCAGGTCTTTTCTGGTGTG
AACCAGTGAGTTAAGTTAGGGTTACTACAGGAGTATAACCCATTTGCCTGTGGCTGCACTTCTG
AAGAAAACGCCTCTCCTTTAGCAACCATTAATTGCCTATAGAGACTCAGGGAAGGGTGGAACCC
CATGACCCTCAACCCCAATGTCCTCGGTGGGGTGTAGCCTCATTACCCATTTCCCCAACAGTTT
TTCACCTGAGACTGAAGTTGTAACAACGTTTTTATACACAGGTATAGGCTATGAAAGGAACTGG
GCTGGGACTTGTGCCTTACATGCTAAGCTGCTACCTGCTGTTTACAGAAGGAACACGTAATGCC
CCAAAGCAGGGCAGCAGGGTCCTGGTGCCCTGGCATGACGGTTAAGTCAGTTGAGAAACTCTAG
CACAGGATGCAGGCTTGCTGCTGACTTCCGGTGAGGCAACAGGTTAAGTGCACGTGCCGCAGCA
GAGCCAGCCCCTCAAGCAAGTCTTTCTGGGGAAGCCTGTTTATCAGCCTAGGATGAGAACAGCC
TGACACTTCACTTCCACTTTAAGGCAGTTGTGAGGATCAACAGTACTTCTCCCTGATCGGAGGC
AGAACTTTGCCTAAGCACATGGCCACTGGTTGAACACTGTCACAGTCGGTGGCAGTAAAAGTTT
TATATGGTTGTTTTTAAGATGAAGGTCAGTAGGACTAGGGTTGTGGCTTAGAGATGGGGCACAC
AAACAACATGCAAAAAGCAGTGGATTTTGATCCCCAGCACCGTAATAAAGAGTAAAAAGCTAGT
AATACCTTTTTTTTTTTTAGGGAATTACTTTCATTAGGGAACTTTAAAAAAGTTCATGTTCATA
CCTAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100007	(Get FASTA)	NCBI Sequence Viewer
	NP_001417130	(Get FASTA)	NCBI Sequence Viewer
	XP_006235591	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96570	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012607
	ENSRNOP00000012607.5

RefSeq Acc Id:

NP_001100007 ⟸ NM_001106537

- UniProtKB:

D3ZGM8 (UniProtKB/TrEMBL), A6JX39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEESDSVRTSPSVASLSENELPPPPPEPPGYVCSLTEDLVTKAREELQEKPEWRLRDVQALRD
MVRKEYPYLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHGCRRSWPEVFSNLRPSALKDVLNS
GFLTVLPHTDPRGCHVLCIRPDRWIPSNYPITENIRAIYLTLEKLIQSEETQVNGVVILADYKG
VSLSKASHFGPFIARKVIGILQDGFPIRIKAVHIVNEPRIFKGIFAIIKPFLKEKIANRFFLHG
SDLSSLHTSLPRNILPKEYGGTAGELDTASWNAVLLASEDDFVKEFCQPESGCDGLLGQPLLPE
GLISDAQCDDSMRAMKSQLYSCY

hide sequence

RefSeq Acc Id:

XP_006235591 ⟸ XM_006235529

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSEESDSVRTSPSVASLSENELPPPPPEPPGYVCSLTEDLVTKAREELQEKPEWRLRDVQALRD
MVRKEYPYLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHGCRRSWPEVFSNLRPSALKDVLNS
GFLTVLPHTDPRGCHVLCIRPDRWIPSNYPITENIRAIYLTLEKLIQSEETQVNGVVILADYKG
VSLSKASHFGPFIARKVIGILQDGFPIRIKAVHIVNEPRIFKGIFAIIKPFLKEKIANRFFLHG
SDLSSLHTSLPRNILPKEYGGTAGELDTASWNAVLLASEDDFVKEFCQPESGCDGLLGQPLLPE
GLISDAQCDDSMRAMKSQLYSCY

hide sequence

Ensembl Acc Id:

ENSRNOP00000012607 ⟸ ENSRNOT00000012606

Protein Domains

CRAL-TRIO

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZGM8-F1-model_v2	AlphaFold	D3ZGM8	1-343	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692638

Promoter ID:

EPDNEW_R3161

Type:

initiation region

Name:

Ttpal_1

Description:

alpha tocopherol transfer protein like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	159,995,068 - 159,995,128	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305754	AgrOrtholog
BioCyc Gene	G2FUF-46899	BioCyc
Ensembl Genes	ENSRNOG00000009076	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012606	ENTREZGENE
	ENSRNOT00000012606.7	UniProtKB/TrEMBL
Gene3D-CATH	3.40.525.10	UniProtKB/TrEMBL
	Alpha-tocopherol transfer	UniProtKB/TrEMBL
	N-terminal domain of phosphatidylinositol transfer protein sec14p	UniProtKB/TrEMBL
InterPro	CRAL-TRIO_dom	UniProtKB/TrEMBL
	CRAL-TRIO_dom_sf	UniProtKB/TrEMBL
	CRAL/TRIO_N_dom_sf	UniProtKB/TrEMBL
	Sec14p-like_N	UniProtKB/TrEMBL
KEGG Report	rno:296349	UniProtKB/TrEMBL
NCBI Gene	296349	ENTREZGENE
PANTHER	ALPHA-TOCOPHEROL TRANSFER PROTEIN-LIKE	UniProtKB/TrEMBL
	ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED	UniProtKB/TrEMBL
Pfam	CRAL_TRIO	UniProtKB/TrEMBL
	CRAL_TRIO_N	UniProtKB/TrEMBL
PhenoGen	Ttpal	PhenoGen
PRINTS	CRETINALDHBP	UniProtKB/TrEMBL
PROSITE	CRAL_TRIO	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009076	RatGTEx
SMART	CRAL_TRIO_N	UniProtKB/TrEMBL
	SEC14	UniProtKB/TrEMBL
Superfamily-SCOP	CRAL_TRIO_C	UniProtKB/TrEMBL
	Sec14p_like_N	UniProtKB/TrEMBL
UniProt	A6JX39	ENTREZGENE, UniProtKB/TrEMBL
	D3ZGM8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-03	Ttpal	alpha tocopherol transfer protein like	Ttpal	tocopherol (alpha) transfer protein-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Ttpal	tocopherol (alpha) transfer protein-like	RGD1305754	similar to 3110080A02Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1305754	similar to 3110080A02Rik protein	RGD1305754_predicted	similar to 3110080A02Rik protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1305754_predicted	similar to 3110080A02Rik protein (predicted)	LOC296349_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296349_predicted	similar to 3110080A02Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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