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Gene: P3h3 (prolyl 3-hydroxylase 3) Rattus norvegicus

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Symbol:

P3h3

Name:

prolyl 3-hydroxylase 3

RGD ID:

1305699

Description:

Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen biosynthetic process and negative regulation of cell population proliferation. Predicted to be part of catalytic complex. Predicted to be active in endoplasmic reticulum. Orthologous to human P3H3 (prolyl 3-hydroxylase 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

leprecan-like 2; Leprel2; LOC297595; MGC189333

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	P3H3 (prolyl 3-hydroxylase 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	P3h3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	P3h3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	P3H3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	P3H3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	P3h3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	P3H3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	P3H3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	P3h3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	P3h3 (prolyl 3-hydroxylase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	P3H3 (prolyl 3-hydroxylase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	P3h3 (prolyl 3-hydroxylase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	p3h3 (prolyl 3-hydroxylase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	p3h3 (prolyl 3-hydroxylase 3)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	XB5901519 [provisional:tprg1l]	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	p3h3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

P3h3^{Tn(sb-T2/Bart3)2.310Mcwi}

Genetic Models:

F344-P3h3^{Tn(sb-T2/Bart3)2.310Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,332,514 - 159,348,428 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	159,332,434 - 159,348,004 (-)	Ensembl				GRCr8
mRatBN7.2	4	157,646,242 - 157,662,035 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,646,243 - 157,662,035 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	163,874,521 - 163,888,373 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,657,430 - 159,671,284 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,292,915 - 158,306,549 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,359,331 - 157,375,186 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,359,332 - 157,372,861 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	224,377,005 - 224,392,881 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	160,964,297 - 160,978,321 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	146,384,156 - 146,397,672 (-)	NCBI		Celera
RGSC_v3.1	4	161,209,590 - 161,225,134 (-)	NCBI
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

osteoarthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

caffeine (ISO)

captan (ISO)

carmustine (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

dextran sulfate (ISO)

diquat (ISO)

disulfiram (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

folpet (ISO)

furan (EXP)

genistein (EXP)

gentamycin (EXP)

hypochlorous acid (ISO)

ivermectin (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methimazole (EXP)

nicotine (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

collagen biosynthetic process (IEA,ISO)

collagen metabolic process (IEA)

G protein-coupled receptor signaling pathway (IEA)

negative regulation of cell population proliferation (IEA,ISO)

peptidyl-lysine hydroxylation (ISO)

Cellular Component

catalytic complex (IEA,ISO)

membrane (IEA)

Molecular Function

dioxygenase activity (IEA)

G protein-coupled receptor activity (IEA)

iron ion binding (IEA)

L-ascorbic acid binding (IEA)

metal ion binding (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932	PMID:19436308	PMID:27119146	PMID:28115524

Genomics

Comparative Map Data

P3h3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,332,514 - 159,348,428 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	159,332,434 - 159,348,004 (-)	Ensembl				GRCr8
mRatBN7.2	4	157,646,242 - 157,662,035 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,646,243 - 157,662,035 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	163,874,521 - 163,888,373 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,657,430 - 159,671,284 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,292,915 - 158,306,549 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,359,331 - 157,375,186 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,359,332 - 157,372,861 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	224,377,005 - 224,392,881 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	160,964,297 - 160,978,321 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	146,384,156 - 146,397,672 (-)	NCBI		Celera
RGSC_v3.1	4	161,209,590 - 161,225,134 (-)	NCBI
Cytogenetic Map	4	q42	NCBI

P3H3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	6,828,407 - 6,839,847 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	6,828,381 - 6,839,854 (+)	Ensembl			hg38	GRCh38
GRCh37	12	6,937,572 - 6,949,011 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	6,807,833 - 6,819,279 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	6,807,464 - 6,819,271	NCBI
Celera	12	8,554,854 - 8,566,302 (+)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	6,791,512 - 6,802,741 (+)	NCBI		HuRef
CHM1_1	12	6,936,568 - 6,948,016 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	6,837,700 - 6,849,139 (+)	NCBI		T2T-CHM13v2.0

P3h3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	124,818,052 - 124,834,680 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	124,818,052 - 124,834,715 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	124,841,089 - 124,857,746 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	124,841,089 - 124,857,752 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	124,791,113 - 124,807,705 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	124,806,714 - 124,823,306 (-)	NCBI		MGSCv36	mm8
Celera	6	126,517,224 - 126,533,811 (-)	NCBI		Celera
Cytogenetic Map	6	F2	NCBI
cM Map	6	59.17	NCBI

P3h3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	4,429,633 - 4,440,256 (+)	Ensembl
ChiLan1.0	NW_004955413	4,429,558 - 4,440,602 (+)	NCBI	ChiLan1.0	ChiLan1.0

P3H3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	12,391,234 - 12,403,013 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	12,387,950 - 12,399,771 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	6,960,193 - 6,971,691 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	6,872,041 - 6,883,187 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	6,872,035 - 6,883,187 (+)	Ensembl			panPan2	panpan1.1

P3H3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	38,182,642 - 38,195,173 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	38,182,856 - 38,194,902 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	8,421,931 - 8,434,105 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	38,535,545 - 38,547,751 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	38,535,759 - 38,547,751 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	38,409,597 - 38,421,793 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	38,450,620 - 38,462,980 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	7,900,667 - 7,912,837 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

P3h3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	102,310,306 - 102,322,990 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936709	978,229 - 989,874 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936709	977,851 - 989,949 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

P3H3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	63,871,508 - 63,885,034 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	63,871,506 - 63,885,294 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	66,307,000 - 66,319,718 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

P3H3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	6,861,123 - 6,872,934 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	6,860,891 - 6,872,549 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	1,350,632 - 1,362,750 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

P3h3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	3,498,547 - 3,508,682 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624860	3,498,493 - 3,508,999 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

P3h3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	23,034,617 - 23,050,844 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in P3h3
117 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	156
Count of miRNA genes:	115
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000021578
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Markers in Region

RH144021

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	157,662,493 - 157,662,639 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	157,375,478 - 157,375,623	NCBI	Rnor6.0
Rnor_5.0	4	224,393,256 - 224,393,401	UniSTS	Rnor5.0
RGSC_v3.4	4	160,980,938 - 160,981,083	UniSTS	RGSC3.4
Celera	4	146,400,118 - 146,400,263	UniSTS
RH 3.4 Map	4	1003.1	UniSTS
Cytogenetic Map	4	q42	UniSTS

RH136873

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	157,646,252 - 157,646,441 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	157,359,342 - 157,359,530	NCBI	Rnor6.0
Rnor_5.0	4	224,377,018 - 224,377,206	UniSTS	Rnor5.0
RGSC_v3.4	4	160,964,308 - 160,964,496	UniSTS	RGSC3.4
Celera	4	146,384,167 - 146,384,355	UniSTS
RH 3.4 Map	4	1004.3	UniSTS
Cytogenetic Map	4	q42	UniSTS

Genetic Models

This gene P3h3 is modified in the following models/strains:

F344-P3h3^{Tn(sb-T2/Bart3)2.310Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
17	13	81	212	91	90	59	90	59	6	403	214	22	190	105	115	31	32	32

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_353597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021578 ⟹ ENSRNOP00000021578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	157,359,332 - 157,372,861 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120322 ⟹ ENSRNOP00000098013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,332,514 - 159,348,004 (-)	Ensembl
mRatBN7.2 Ensembl	4	157,646,243 - 157,662,035 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135675 ⟹ ENSRNOP00000100497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,332,434 - 159,348,004 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140297 ⟹ ENSRNOP00000110566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,335,068 - 159,348,004 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169519 ⟹ ENSRNOP00000104723

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	159,334,417 - 159,348,004 (-)	Ensembl

RefSeq Acc Id:

NM_001106620 ⟹ NP_001100090

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,332,514 - 159,348,004 (-)	NCBI
mRatBN7.2	4	157,646,242 - 157,661,735 (-)	NCBI
Rnor_6.0	4	157,359,331 - 157,372,861 (-)	NCBI
Rnor_5.0	4	224,377,005 - 224,392,881 (-)	NCBI
RGSC_v3.4	4	160,964,297 - 160,978,321 (-)	RGD
Celera	4	146,384,156 - 146,397,672 (-)	RGD

Sequence:

show sequence

CGAACCCAACGCACTTGCAGATGCGGGAAGACATGGCTAAGTATAGGAGAATGTCTGCAATACG
ACCCCAGAGTTTCCAGGACCTGGTGACGCCCCTGTATTGGGCAGCTTATGACACTGGCCTGGAG
CTACTGAAGCAACAGGAAGCAGCTTTGGCTCTACCCAAACTAGAGGAGGCCCTCCAGGGGAGCC
TGGCCCAGATGGAGAGCTGTCGTGCTGGCTGTGAGGGACCTGAGGAGCACCAAGGGGCTGAAGA
AGAGGAGGAGAAAGGGACCCAGGGGGGCCTGTATGAAGCCATTGCAGGACACTGGATTCGGGTT
CTGCAGTGCCGGCAGCACTGTGTAGCAGAGACAGCCACACGTCCTGGTCGCAGCTTCCCTGTCC
GGGACTTCCTCCCAAGCCAGCTGAGACGGCTGCACGAGGCCTATGCTCAGGTGGGGAATGTGTC
TCAGGCCGTGGAAAATGTCCTGAGCGTCCTGCTCTTCTATCCAGAGGATGAGGCTGCCAAAAGG
GCTCTGAACCAGTACCAAACTCAGCTGGGAGAGCTGAGACCTGACCTGGGACCACGAGAGGACG
TCCAGCGTTTCATCCTTCGCTCCCTCGGGGAGAAGAGACAGCTATATTACGCCATGGAGCATCT
GGGCACCAGCTTCAAGGACCCGGATTCTTGGACCCCAGAGGCTTTCATCCCTAAAGCACTGAGA
GAGAAGCTCAGAGAGGATCAAGAGAAGAAGCCCTGGGACAGTGAGCCGCCACAGCAGAAGCCCC
CGACTTACTGGAAGGATGCCCTTCTCCTGGAGGGTGTGACTCTCACCCAGGATGCCCAGCAGCT
GAATGGATCCGAGCGGGCTGTGTTAGATGGGCTGCTAACTCCAGCCGAGTGTGGGCTTCTACTG
CAGCTGGCCAAGGATGCAGCTGAGGCTGGAGCCAGGTCAGGCTACCGTGGGCGCCGCTCCCCTC
ATAGTCCTCACGAACGGTTTGAGGGACTCACGGTGCTCAAGGCTGCTCAGCTGGCCCGGGCTGG
GACGGTGGGCAGGCCAGGCGCTAAGCTGCTTCTGGAGGTGAGTGAGCGAGTACGCACCTTGACC
CAGGCCTACTTCTCCCCGGAACGGCCACTGCATCTTTCTTTCACGCACCTGGTGTGTAGAAGTG
CCATAGAAGGTGAGCAAGAACAGCGTATGGACCTGAGTCACCCGGTTCACGCAGACAACTGCTT
CCTGGACCCTGACACCGGGGAATGCTGGCGGGAGCCCCCAGCCTACACCTATCGAGACTATAGT
GGACTCCTCTACCTCAATGATGACTTCAAGGGAGGCGACCTGTTCTTCACGCAGCCCAACGCCC
TCACTGTCACGGCTCAGGTCCGTCCTCGATGTGGACGCCTCGTGGCCTTCAGCTCTGGGGGTGA
GAATCCCCATGGCGTATGGGCTGTGACTCGGGGACGGCGTTGTGCCCTAGCTCTGTGGCACACC
TGGGCACCTGAGCACAGGGAGCAGGAGTGGACAGAAGCCAAAGAGCTGTTGCGGGAGGAAGAGG
AGGAGGAAGAGGAAAATGAGGAAGAGGAAGAAATCCTGAGTAGAGACCCTTCCCCAGAACCCCC
AAGTCACAAGCTTCAGCGGGTCCAAGACAAAGCCGGGAAACCACTCCGGGTCCGAGAGGAACTG
TGAACGGCCAGCTTCTTTGGATATGGCCACTCAGCTTGGGAAGAGACCAATGAGAATGCCCTGA
TGACATTGGGGACATAGTAGCATGCCGAGTCTACCATCTCGGGGACCTACAAGGGCCACCAAAC
CCTGGCCTCACAAGCTTGCAACACAGACTCAGCCTAGAGAACATCAGGCCTTGGGAGCTAGGGC
TGGCCCCGACTGCGGGGCCTGCAAACTCCCTAGGACAGGCAAAGATCACTGTGCCTCTCTGAAG
GGCATGGCGAGGATTGAGGGCCAAGTGCTTCTCATAAGAAACACACAGAGAGGAAAGACAGTCT
CACCTTCTCCCAACCTGTGCAATAAAGGATGTGACTACCCAAAAAAAAAAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

XM_039107449 ⟹ XP_038963377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,332,514 - 159,348,428 (-)	NCBI
mRatBN7.2	4	157,646,242 - 157,662,035 (-)	NCBI

RefSeq Acc Id:

XM_039107450 ⟹ XP_038963378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,342,387 - 159,348,428 (-)	NCBI
mRatBN7.2	4	157,656,112 - 157,662,035 (-)	NCBI

RefSeq Acc Id:

XM_063285908 ⟹ XP_063141978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,332,514 - 159,346,182 (-)	NCBI

RefSeq Acc Id:

XM_063285909 ⟹ XP_063141979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,341,904 - 159,348,428 (-)	NCBI

RefSeq Acc Id:

XR_005503202

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,337,099 - 159,348,428 (-)	NCBI
mRatBN7.2	4	157,649,892 - 157,662,035 (-)	NCBI

RefSeq Acc Id:

XR_353597

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,333,207 - 159,348,428 (-)	NCBI
mRatBN7.2	4	157,646,940 - 157,662,035 (-)	NCBI
Rnor_6.0	4	157,360,078 - 157,375,186 (-)	NCBI
Rnor_5.0	4	224,377,005 - 224,392,881 (-)	NCBI

Sequence:

show sequence

CCCTAAATGCGTCCGGGTGCTCACTTTCTGGGTAGAAAAGTTTTGGTGCCAGAATTGGTGTCCC
ACACCCGGAGTCACCCTCTTCCACGGAGTGTTTCGAAGATCCTTCTTCATACGGTGGGTTGGCA
GAAACGTGGGGAGATGAACGTGTGAGGGGCGTCCAGAATCCTTTTCCAGGACCCCAAGATGGAC
GGAAACGAAGTTACCTCCACGCCACAGGCTTCCCAGGACCCCTATTTCATCCTTCTTTCTCCAT
TTTCCTTTTTTACCCACACTAGACCTGTGTCCTTTGGAATTCTTGCTCCGTCTCTCCGTCTCAC
TTCGGTTTCCCCAGCGACAGGCCTAAACCCAGCAGGTTTCAGCATCACTCATTCCCTCTCTCTC
CCTCTCCCTCCTCCTCTCCATCTCTCCTTCCTTCTCCTCCCCCTGCCCCCCCTTCCTCTCCCTC
CCTCCGGTCTCCGCATTTCCCTTCGGCGGTGGGCCCGCGGCTCTGGGCACCATGCTCCGGCTCC
TGCGGTTGTTGCTTTTGCTGCTGCTGCCTCCCCCGGGGTCCCCCGAGCCTTCCGAGCCTCCAGG
TCTGGCCCAGTTGTCGCCCGGGGCGCCTCCTCAGGCCCCGGACTTGCTTTACGCGGACGGCCTG
AGAGCCTACTCGGCCGGGGCTTGGGCGCCCGCAGTGGCTCTGCTGCGAGAGGCGCTGCGGAGCC
GGGAAGTGCTGGGCCGCGCGCGCCAGGACTGCGGGGCGAGCTGCGCGGCCGAGCCGGGCGCCGC
GCTCCCCGCCCAGATCCTGGGAGCCCCGCAGCCTGTCTCGGGGCCCGGGGCCTGGGAACCCCTG
CTCCTGCGCGCCACGCTCCGCCGCGCCGAGTGCCTGACCCAGTGCGCGGCGGGGAGGCTGGGCC
CGGGGGGCGCGGCGCGGTTCCGCGTGGTGAGCGCGCTGCGGGATGCCTTCCGCCGGCGGGAGCC
CTACAACTACCTGCAGAGGGCCTACTACCAGTTGAAGAAGTTGGACCTGGCAGCTTCAGCAGCA
CACACCTTCTTTGTGGCGAACCCAACGCACTTGCAGATGCGGGAAGACATGGCTAAGTATAGGA
GAATGTCTGCAATACGACCCCAGAGTTTCCAGGACCTGGTGACGCCCCTGTATTGGGCAGCTTA
TGACACTGGCCTGGAGCTACTGAAGCAACAGGAAGCAGCTTTGGCTCTACCCAAACTAGAGGAG
GCCCTCCAGGGGAGCCTGGCCCAGATGGAGAGCTGTCGTGCTGGCTGTGAGGGACCTGAGGAGC
ACCAAGGGGCTGAAGAAGAGGAGGAGAAAGGGACCCAGGGGGGCCTGTATGAAGCCATTGCAGG
ACACTGGATTCGGGTTCTGCAGTGCCGGCAGCACTGTGTAGCAGAGACAGCCACACGTCCTGGT
CGCAGCTTCCCTGTCCGGGACTTCCTCCCAAGCCAGCTGAGACGGCTGCACGAGGCCTATGCTC
AGGTGGGGAATGTGTCTCAGGCCGTGGAAAATGTCCTGAGCGTCCTGCTCTTCTATCCAGAGGA
TGAGGCTGCCAAAAGGGCTCTGAACCAGTACCAAACTCAGCTGGGAGAGCTGAGACCTGACCTG
GGACCACGAGAGGACGTCCAGCGTTTCATCCTTCGCTCCCTCGGGGAGAAGAGACAGCTATATT
ACGCCATGGAGCATCTGGGCACCAGCTTCAAGGACCCGGATTCTTGGACCCCAGAGGCTTTCAT
CCCTAAAGCACTGAGAGAGAAGCTCAGAGAGGATCAAGAGAAGAAGCCCTGGGACAGTGAGCCG
CCACAGCAGAAGCCCCCGACTTACTGGAAGGATGCCCTTCTCCTGGAGGGTGTGACTCTCACCC
AGGATGCCCAGCAGCTGAATGGATCCGAGCGGGCTGTGTTAGATGGGCTGCTAACTCCAGCCGA
GTGTGGGCTTCTACTGCAGCTGGCCAAGGATGCAGCTGAGGCTGGAGCCAGGTCAGGCTACCGT
GGGCGCCGCTCCCCTCATAGTCCTCACGAACGGTTTGAGGGACTCACGGTGCTCAAGGCTGCTC
AGCTGGCCCGGGCTGGGACGGTGGGCAGGCCAGGCGCTAAGCTGCTTCTGGAGGTGAGTGAGCG
AGTACGCACCTTGACCCAGGCCTACTTCTCCCCGGAACGGCCACTGCATCTTTCTTTCACGCAC
CTGGTGTGTAGAAGTGCCATAGAAGGTGAGCAAGAACAGCGTATGGACCTGAGTCACCCGGTTC
ACGCAGACAACTGCTTCCTGGACCCTGACACCGGGGAATGCTGGCGGGAGCCCCCAGCCTACAC
CTATCGAGACTATAGTGGACTCCTCTACCTCAATGATGACTTCAAGGGAGGCGACCTGTTCTTC
ACGCAGCCCAACGCCCTCACTGTCACGGGTCTGTGCAGCCGGGCTGGCTGGAACTTACTACGTA
GACCAGGATGGTTTCGAGCCACAGAGACCTGCCTTTTTGAACCTCCCAAGTGCTGGGATTAAAG
GCGTGTGACCCCATGCCTGGCTTTGCACACACATACTGTGTGGCCTGCAGGCTCAGGTCCGTCC
TCGATGTGGACGCCTCGTGGCCTTCAGCTCTGGGGGTGAGAATCCCCATGGCGTATGGGCTGTG
ACTCG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100090	(Get FASTA)	NCBI Sequence Viewer
	XP_038963377	(Get FASTA)	NCBI Sequence Viewer
	XP_038963378	(Get FASTA)	NCBI Sequence Viewer
	XP_063141978	(Get FASTA)	NCBI Sequence Viewer
	XP_063141979	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68992	(Get FASTA)	NCBI Sequence Viewer
	EDM01915	(Get FASTA)	NCBI Sequence Viewer
	EDM01916	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000098013
	ENSRNOP00000098013.1
	ENSRNOP00000100497
	ENSRNOP00000100497.1
	ENSRNOP00000104723.1
	ENSRNOP00000109301.1
	ENSRNOP00000110566.1

RefSeq Acc Id:	NP_001100090 ⟸ NM_001106620
- Peptide Label:	precursor
- UniProtKB:	A0AA76ENW5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MREDMAKYRRMSAIRPQSFQDLVTPLYWAAYDTGLELLKQQEAALALPKLEEALQGSLAQMESC RAGCEGPEEHQGAEEEEEKGTQGGLYEAIAGHWIRVLQCRQHCVAETATRPGRSFPVRDFLPSQ LRRLHEAYAQVGNVSQAVENVLSVLLFYPEDEAAKRALNQYQTQLGELRPDLGPREDVQRFILR SLGEKRQLYYAMEHLGTSFKDPDSWTPEAFIPKALREKLREDQEKKPWDSEPPQQKPPTYWKDA LLLEGVTLTQDAQQLNGSERAVLDGLLTPAECGLLLQLAKDAAEAGARSGYRGRRSPHSPHERF EGLTVLKAAQLARAGTVGRPGAKLLLEVSERVRTLTQAYFSPERPLHLSFTHLVCRSAIEGEQE QRMDLSHPVHADNCFLDPDTGECWREPPAYTYRDYSGLLYLNDDFKGGDLFFTQPNALTVTAQV RPRCGRLVAFSSGGENPHGVWAVTRGRRCALALWHTWAPEHREQEWTEAKELLREEEEEEEENE EEEEILSRDPSPEPPSHKLQRVQDKAGKPLRVREEL hide sequence

Ensembl Acc Id:

ENSRNOP00000021578 ⟸ ENSRNOT00000021578

RefSeq Acc Id:	XP_038963377 ⟸ XM_039107449
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038963378 ⟸ XM_039107450
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000098013 ⟸ ENSRNOT00000120322

RefSeq Acc Id:	XP_063141978 ⟸ XM_063285908
- Peptide Label:	isoform X2
- UniProtKB:	B5DFB0 (UniProtKB/TrEMBL), F1MAR9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141979 ⟸ XM_063285909
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000110566 ⟸ ENSRNOT00000140297

Ensembl Acc Id:

ENSRNOP00000104723 ⟸ ENSRNOT00000169519

Ensembl Acc Id:

ENSRNOP00000100497 ⟸ ENSRNOT00000135675

Protein Domains

Fe2OG dioxygenase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DFB0-F1-model_v2	AlphaFold	B5DFB0	1-548	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305699	AgrOrtholog
BioCyc Gene	G2FUF-43062	BioCyc
BioCyc Pathway	PWY-7894 [procollagen hydroxylation and glycosylation]	BioCyc
BioCyc Pathway Image	PWY-7894	BioCyc
Ensembl Genes	ENSRNOG00000016071	Ensembl
	ENSRNOG00000016143	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000071218	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000120322	ENTREZGENE
	ENSRNOT00000120322.2	UniProtKB/TrEMBL
	ENSRNOT00000132007.1	UniProtKB/TrEMBL
	ENSRNOT00000135675	ENTREZGENE
	ENSRNOT00000135675.1	UniProtKB/TrEMBL
	ENSRNOT00000140297.1	UniProtKB/TrEMBL
	ENSRNOT00000169519.1	UniProtKB/TrEMBL
Gene3D-CATH	q2cbj1_9rhob like domain	UniProtKB/TrEMBL
	Tetratricopeptide repeat domain	UniProtKB/TrEMBL
InterPro	Leprecan_dom	UniProtKB/TrEMBL
	Oxoglutarate/Fe-dep_oxygenase	UniProtKB/TrEMBL
	P3H	UniProtKB/TrEMBL
	Pro_4_hyd_alph	UniProtKB/TrEMBL
	Pro_4_hyd_alph_FE2OG_OXY	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:297595	UniProtKB/TrEMBL
NCBI Gene	297595	ENTREZGENE
PANTHER	PTHR14049	UniProtKB/TrEMBL
	PTHR14049:SF14	UniProtKB/TrEMBL
Pfam	2OG-FeII_Oxy_3	UniProtKB/TrEMBL
	TPR_leprecan	UniProtKB/TrEMBL
PhenoGen	P3h3	PhenoGen
PROSITE	FE2OG_OXY	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016071	RatGTEx
	ENSRNOG00000016143	RatGTEx
	ENSRNOG00000071218	RatGTEx
SMART	P4Hc	UniProtKB/TrEMBL
UniProt	A0AA76ENW5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LBF3_RAT	UniProtKB/TrEMBL
	A0ABK0LI77_RAT	UniProtKB/TrEMBL
	A0ABK0LP29_RAT	UniProtKB/TrEMBL
	A0ABK0M3E0_RAT	UniProtKB/TrEMBL
	B5DFB0	ENTREZGENE, UniProtKB/TrEMBL
	F1MAR9	ENTREZGENE
UniProt Secondary	F1MAR9	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Leprel2	leprecan-like 2	Leprel2_predicted	leprecan-like 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Leprel2_predicted	leprecan-like 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

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Imported Disease Annotations - CTD

BioCyc Pathways