Fbxl3 (F-box and leucine-rich repeat protein 3) - Rat Genome Database

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Gene: Fbxl3 (F-box and leucine-rich repeat protein 3) Rattus norvegicus
Analyze
Symbol: Fbxl3
Name: F-box and leucine-rich repeat protein 3
RGD ID: 1305660
Description: Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in several processes, including SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; entrainment of circadian clock by photoperiod; and protein destabilization. Predicted to be located in nuclear body. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human FBXL3 (F-box and leucine rich repeat protein 3); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: F-box and leucine-rich repeat protein 3a; F-box/LRR-repeat protein 3; Fbxl3a; LOC306129
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81586,321,504 - 86,341,387 (-)NCBIGRCr8
mRatBN7.21579,906,795 - 79,926,678 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1579,906,795 - 79,927,867 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1583,885,188 - 83,905,079 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01585,008,227 - 85,028,119 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01581,935,852 - 81,955,744 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01593,647,307 - 93,667,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1593,647,310 - 93,667,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01597,135,100 - 97,155,065 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41587,093,141 - 87,113,003 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11587,110,759 - 87,128,783 (-)NCBI
Celera1579,046,955 - 79,066,741 (-)NCBICelera
Cytogenetic Map15q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,ISO)
nuclear body  (IEA,ISO)
nucleus  (IBA,ISO)
SCF ubiquitin ligase complex  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17462724   PMID:17463251   PMID:17463252   PMID:19028597   PMID:23452855   PMID:23452856   PMID:23616524   PMID:26776516  


Genomics

Comparative Map Data
Fbxl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81586,321,504 - 86,341,387 (-)NCBIGRCr8
mRatBN7.21579,906,795 - 79,926,678 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1579,906,795 - 79,927,867 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1583,885,188 - 83,905,079 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01585,008,227 - 85,028,119 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01581,935,852 - 81,955,744 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01593,647,307 - 93,667,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1593,647,310 - 93,667,395 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01597,135,100 - 97,155,065 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41587,093,141 - 87,113,003 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11587,110,759 - 87,128,783 (-)NCBI
Celera1579,046,955 - 79,066,741 (-)NCBICelera
Cytogenetic Map15q21NCBI
FBXL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381377,005,260 - 77,027,159 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1376,992,598 - 77,027,195 (-)EnsemblGRCh38hg38GRCh38
GRCh371377,579,395 - 77,601,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361376,477,397 - 76,499,258 (-)NCBINCBI36Build 36hg18NCBI36
Build 341376,477,396 - 76,499,258NCBI
Celera1358,477,376 - 58,499,318 (-)NCBICelera
Cytogenetic Map13q22.3NCBI
HuRef1358,277,088 - 58,299,043 (-)NCBIHuRef
CHM1_11377,547,295 - 77,569,223 (-)NCBICHM1_1
T2T-CHM13v2.01376,222,648 - 76,250,801 (-)NCBIT2T-CHM13v2.0
Fbxl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914103,318,470 - 103,337,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14103,317,675 - 103,337,002 (-)EnsemblGRCm39 Ensembl
GRCm3814103,080,239 - 103,099,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14103,080,239 - 103,099,566 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714103,479,456 - 103,498,726 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614101,967,535 - 101,986,017 (-)NCBIMGSCv36mm8
Celera14101,708,112 - 101,723,414 (-)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1451.73NCBI
Fbxl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540430,215,108 - 30,229,798 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540430,215,140 - 30,229,798 (+)NCBIChiLan1.0ChiLan1.0
FBXL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21478,574,434 - 78,596,390 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11377,170,580 - 77,192,331 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01358,219,260 - 58,244,780 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11377,266,496 - 77,283,651 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1377,266,496 - 77,283,651 (-)Ensemblpanpan1.1panPan2
FBXL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12230,579,598 - 30,598,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2230,581,474 - 30,598,886 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2230,440,696 - 30,459,977 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02230,891,689 - 30,910,990 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2230,891,692 - 30,911,121 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12230,559,157 - 30,578,437 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02230,597,466 - 30,616,743 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02230,666,969 - 30,686,249 (-)NCBIUU_Cfam_GSD_1.0
Fbxl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945128,841,836 - 128,863,274 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365114,258,548 - 4,283,285 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365114,259,066 - 4,280,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1149,131,665 - 49,151,009 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11149,131,663 - 49,151,380 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21153,769,579 - 53,788,895 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1356,089,147 - 56,111,472 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl356,088,938 - 56,105,977 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604612,297,829 - 12,320,027 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475123,374,702 - 23,398,727 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475123,374,622 - 23,391,535 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fbxl3
61 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:700
Count of miRNA genes:302
Interacting mature miRNAs:396
Transcripts:ENSRNOT00000057789
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1581555Eae19Experimental allergic encephalomyelitis QTL 194.7nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)157630609990088744Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat

Markers in Region
RH131875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21579,908,673 - 79,908,876 (+)MAPPERmRatBN7.2
Rnor_6.01593,649,382 - 93,649,584NCBIRnor6.0
Rnor_5.01597,137,175 - 97,137,377UniSTSRnor5.0
RGSC_v3.41587,095,020 - 87,095,222UniSTSRGSC3.4
Celera1579,048,834 - 79,049,036UniSTS
RH 3.4 Map15536.2UniSTS
Cytogenetic Map15q22UniSTS
RH134429  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21579,907,054 - 79,907,271 (+)MAPPERmRatBN7.2
Rnor_6.01593,647,763 - 93,647,979NCBIRnor6.0
Rnor_5.01597,135,556 - 97,135,772UniSTSRnor5.0
RGSC_v3.41587,093,401 - 87,093,617UniSTSRGSC3.4
Celera1579,047,215 - 79,047,431UniSTS
RH 3.4 Map15547.6UniSTS
Cytogenetic Map15q22UniSTS
BE109190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21579,927,400 - 79,927,564 (+)MAPPERmRatBN7.2
Rnor_6.01593,668,118 - 93,668,281NCBIRnor6.0
Rnor_5.01597,155,788 - 97,155,951UniSTSRnor5.0
RGSC_v3.41587,113,726 - 87,113,889UniSTSRGSC3.4
Celera1579,067,464 - 79,067,627UniSTS
RH 3.4 Map15498.71UniSTS
Cytogenetic Map15q22UniSTS
RH140351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21579,927,731 - 79,927,888 (+)MAPPERmRatBN7.2
Rnor_6.01593,668,449 - 93,668,605NCBIRnor6.0
Rnor_5.01597,156,119 - 97,156,275UniSTSRnor5.0
RGSC_v3.41587,114,057 - 87,114,213UniSTSRGSC3.4
Celera1579,067,795 - 79,067,951UniSTS
RH 3.4 Map15547.4UniSTS
Cytogenetic Map15q22UniSTS
AI178492  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21579,906,487 - 79,906,674 (+)MAPPERmRatBN7.2
Rnor_6.01593,647,196 - 93,647,382NCBIRnor6.0
Rnor_5.01597,134,989 - 97,135,175UniSTSRnor5.0
RGSC_v3.41587,092,834 - 87,093,020UniSTSRGSC3.4
Celera1579,046,648 - 79,046,834UniSTS
RH 3.4 Map15499.01UniSTS
Cytogenetic Map15q22UniSTS
AI009239  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21579,909,524 - 79,909,744 (+)MAPPERmRatBN7.2
Rnor_6.01593,650,233 - 93,650,452NCBIRnor6.0
Rnor_5.01597,138,026 - 97,138,245UniSTSRnor5.0
RGSC_v3.41587,095,871 - 87,096,090UniSTSRGSC3.4
Celera1579,049,685 - 79,049,904UniSTS
RH 3.4 Map15520.19UniSTS
Cytogenetic Map15q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000089876   ⟹   ENSRNOP00000071266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1579,906,795 - 79,927,867 (-)Ensembl
Rnor_6.0 Ensembl1593,647,503 - 93,667,395 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093184   ⟹   ENSRNOP00000076303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1593,656,743 - 93,667,116 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1593,649,686 - 93,656,985 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093571   ⟹   ENSRNOP00000076079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1593,647,310 - 93,667,355 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093603   ⟹   ENSRNOP00000076144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1593,649,250 - 93,666,808 (-)Ensembl
RefSeq Acc Id: NM_001100568   ⟹   NP_001094038
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81586,321,504 - 86,341,387 (-)NCBI
mRatBN7.21579,906,795 - 79,926,678 (-)NCBI
Rnor_6.01593,647,503 - 93,667,395 (-)NCBI
Rnor_5.01597,135,100 - 97,155,065 (-)NCBI
RGSC_v3.41587,093,141 - 87,113,003 (-)RGD
Celera1579,046,955 - 79,066,741 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252442   ⟹   XP_006252504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81586,321,505 - 86,340,800 (-)NCBI
mRatBN7.21579,906,795 - 79,926,128 (-)NCBI
Rnor_6.01593,647,307 - 93,667,074 (-)NCBI
Rnor_5.01597,135,100 - 97,155,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093401   ⟹   XP_038949329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81586,321,505 - 86,341,193 (-)NCBI
mRatBN7.21579,906,795 - 79,926,482 (-)NCBI
RefSeq Acc Id: XM_039093402   ⟹   XP_038949330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81586,321,505 - 86,341,107 (-)NCBI
mRatBN7.21579,906,795 - 79,926,482 (-)NCBI
RefSeq Acc Id: NP_001094038   ⟸   NM_001100568
- UniProtKB: G3V9P4 (UniProtKB/TrEMBL),   A6HU89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252504   ⟸   XM_006252442
- Peptide Label: isoform X1
- UniProtKB: G3V9P4 (UniProtKB/TrEMBL),   A6HU89 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071266   ⟸   ENSRNOT00000089876
Ensembl Acc Id: ENSRNOP00000076144   ⟸   ENSRNOT00000093603
Ensembl Acc Id: ENSRNOP00000076079   ⟸   ENSRNOT00000093571
Ensembl Acc Id: ENSRNOP00000076303   ⟸   ENSRNOT00000093184
RefSeq Acc Id: XP_038949330   ⟸   XM_039093402
- Peptide Label: isoform X2
- UniProtKB: G3V9P4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949329   ⟸   XM_039093401
- Peptide Label: isoform X1
- UniProtKB: A6HU89 (UniProtKB/TrEMBL),   G3V9P4 (UniProtKB/TrEMBL)
Protein Domains
F-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9P4-F1-model_v2 AlphaFold G3V9P4 1-428 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699868
Promoter ID:EPDNEW_R10392
Type:multiple initiation site
Name:Fbxl3_1
Description:F-box and leucine-rich repeat protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01593,667,406 - 93,667,466EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305660 AgrOrtholog
BioCyc Gene G2FUF-12693 BioCyc
Ensembl Genes ENSRNOG00000059334 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089876.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7319310 IMAGE-MGC_LOAD
InterPro F-box_dom_cyclin-like UniProtKB/TrEMBL
  F-box_dom_like UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
KEGG Report rno:306129 UniProtKB/TrEMBL
MGC_CLONE MGC:109427 IMAGE-MGC_LOAD
NCBI Gene 306129 ENTREZGENE
PANTHER ES1 PROTEIN HOMOLOG, MITOCHONDRIAL UniProtKB/TrEMBL
  F-BOX DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
PhenoGen Fbxl3 PhenoGen
RatGTEx ENSRNOG00000059334 RatGTEx
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP F-box_dom_Skp2-like UniProtKB/TrEMBL
  RNI-like UniProtKB/TrEMBL
UniProt A6HU89 ENTREZGENE, UniProtKB/TrEMBL
  G3V9P4 ENTREZGENE, UniProtKB/TrEMBL
  Q562A1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Fbxl3  F-box and leucine-rich repeat protein 3  Fbxl3a  F-box and leucine-rich repeat protein 3a  Symbol and Name updated 1299863 APPROVED
2005-12-06 Fbxl3a  F-box and leucine-rich repeat protein 3a  Fbxl3a_predicted  F-box and leucine-rich repeat protein 3a (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Fbxl3a_predicted  F-box and leucine-rich repeat protein 3a (predicted)      Symbol and Name status set to approved 70820 APPROVED