Sde2 (spliceosome associated SDE2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Sde2 (spliceosome associated SDE2) Rattus norvegicus
Analyze
Symbol: Sde2
Name: spliceosome associated SDE2 (Ensembl:SDE2 telomere maintenance homolog)
RGD ID: 1305572
Description: Predicted to enable damaged DNA binding activity and snoRNA binding activity. Predicted to be involved in several processes, including cellular response to UV; gene expression; and mitotic G1 DNA damage checkpoint signaling. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SDE2 (SDE2 telomere maintenance homolog); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC289315; LOC289315; MGC109518; protein SDE2 homolog; replication stress response regulator SDE2; RGD1305572; SDE2 telomere maintenance homolog; SDE2 telomere maintenance homolog (S. pombe); similar to hypothetical protein MGC30618; UBL fusion protein SDE2; UPF0667 protein C1orf55 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,110,598 - 95,126,929 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1395,110,698 - 95,126,927 (+)EnsemblGRCr8
mRatBN7.21392,578,843 - 92,595,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,578,874 - 92,595,140 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1395,084,206 - 95,100,471 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,484,131 - 96,500,394 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,658,827 - 93,675,094 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,136,921 - 99,153,187 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,136,871 - 99,153,181 (+)Ensemblrn6Rnor6.0
Rnor_5.013104,135,522 - 104,151,788 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41396,585,245 - 96,601,482 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1392,124,002 - 92,140,248 (+)NCBICelera
RGSC_v3.11396,757,755 - 96,788,687 (+)NCBI
Cytogenetic Map13q26NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO,ISS)
cytosol  (IEA,ISO)
mitochondrion  (ISO)
nuclear speck  (IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:14766980   PMID:27906959   PMID:34800366  


Genomics

Comparative Map Data
Sde2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,110,598 - 95,126,929 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1395,110,698 - 95,126,927 (+)EnsemblGRCr8
mRatBN7.21392,578,843 - 92,595,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,578,874 - 92,595,140 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1395,084,206 - 95,100,471 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,484,131 - 96,500,394 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,658,827 - 93,675,094 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,136,921 - 99,153,187 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,136,871 - 99,153,181 (+)Ensemblrn6Rnor6.0
Rnor_5.013104,135,522 - 104,151,788 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41396,585,245 - 96,601,482 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1392,124,002 - 92,140,248 (+)NCBICelera
RGSC_v3.11396,757,755 - 96,788,687 (+)NCBI
Cytogenetic Map13q26NCBI
SDE2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,982,702 - 225,999,343 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,982,702 - 225,999,350 (-)Ensemblhg38GRCh38
GRCh371226,170,403 - 226,187,044 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,237,026 - 224,253,689 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1199,361,495 - 199,378,155 (-)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,688,260 - 196,704,921 (-)NCBIHuRef
CHM1_11227,443,144 - 227,459,807 (-)NCBICHM1_1
T2T-CHM13v2.01225,170,616 - 225,187,257 (-)NCBIT2T-CHM13v2.0
Sde2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,678,716 - 180,695,678 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,678,692 - 180,695,678 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381180,851,151 - 180,868,113 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,851,127 - 180,868,113 (+)Ensemblmm10GRCm38
MGSCv371182,781,282 - 182,798,244 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361182,687,826 - 182,704,788 (+)NCBIMGSCv36mm8
Celera1187,914,171 - 187,931,333 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
Sde2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489180,414 - 210,900 (-)Ensembl
ChiLan1.0NW_004955489181,425 - 210,966 (-)NCBIChiLan1.0ChiLan1.0
SDE2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,538,033 - 23,554,768 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,486,635 - 23,503,370 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,443,945 - 201,460,668 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,441,517 - 206,457,679 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,441,517 - 206,457,679 (-)EnsemblpanPan2panpan1.1
SDE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,857,220 - 38,871,584 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,857,234 - 38,870,157 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha738,337,558 - 38,351,932 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0738,689,246 - 38,703,633 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,689,287 - 38,703,628 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,529,069 - 38,543,423 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,537,375 - 38,551,733 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,806,874 - 38,821,298 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sde2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,967,783 - 51,984,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,760,639 - 2,779,657 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,763,243 - 2,779,506 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDE2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,876,386 - 13,897,862 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11013,879,482 - 13,897,847 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,889,651 - 15,908,417 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SDE2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,779,561 - 3,793,496 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,779,560 - 3,795,893 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660553,784,535 - 3,798,569 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sde2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480797,383 - 127,785 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480797,646 - 127,844 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sde2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11059,168,214 - 59,183,388 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sde2
228 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:204
Count of miRNA genes:140
Interacting mature miRNAs:166
Transcripts:ENSRNOT00000004350
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH127324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,594,744 - 92,594,949 (+)MAPPERmRatBN7.2
Rnor_6.01399,152,790 - 99,152,994NCBIRnor6.0
Rnor_5.013104,151,391 - 104,151,595UniSTSRnor5.0
RGSC_v3.41396,601,085 - 96,601,289UniSTSRGSC3.4
Celera1392,139,851 - 92,140,055UniSTS
RH 3.4 Map13631.5UniSTS
Cytogenetic Map13q26UniSTS
BQ205850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,588,445 - 92,588,596 (+)MAPPERmRatBN7.2
Rnor_6.01399,146,492 - 99,146,642NCBIRnor6.0
Rnor_5.013104,145,093 - 104,145,243UniSTSRnor5.0
RGSC_v3.41396,594,816 - 96,594,966UniSTSRGSC3.4
Celera1392,133,555 - 92,133,705UniSTS
RH 3.4 Map13627.1UniSTS
Cytogenetic Map13q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004350   ⟹   ENSRNOP00000004350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1395,110,718 - 95,126,927 (+)Ensembl
mRatBN7.2 Ensembl1392,578,874 - 92,595,140 (+)Ensembl
Rnor_6.0 Ensembl1399,136,921 - 99,153,181 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078263   ⟹   ENSRNOP00000075283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1395,110,698 - 95,126,927 (+)Ensembl
mRatBN7.2 Ensembl1392,578,874 - 92,595,140 (+)Ensembl
Rnor_6.0 Ensembl1399,136,871 - 99,152,038 (+)Ensembl
RefSeq Acc Id: NM_001024970   ⟹   NP_001020141
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,110,663 - 95,126,929 (+)NCBI
mRatBN7.21392,578,874 - 92,595,142 (+)NCBI
Rnor_6.01399,136,921 - 99,153,187 (+)NCBI
Rnor_5.013104,135,522 - 104,151,788 (+)NCBI
RGSC_v3.41396,585,245 - 96,601,482 (+)RGD
Celera1392,124,002 - 92,140,248 (+)RGD
Sequence:
RefSeq Acc Id: XM_039090554   ⟹   XP_038946482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,110,712 - 95,126,925 (+)NCBI
mRatBN7.21392,578,904 - 92,595,142 (+)NCBI
RefSeq Acc Id: XM_039090555   ⟹   XP_038946483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,110,598 - 95,126,925 (+)NCBI
mRatBN7.21392,578,860 - 92,595,142 (+)NCBI
RefSeq Acc Id: XM_039090556   ⟹   XP_038946484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,116,803 - 95,126,925 (+)NCBI
mRatBN7.21392,585,014 - 92,595,142 (+)NCBI
RefSeq Acc Id: XM_039090557   ⟹   XP_038946485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,110,598 - 95,118,985 (+)NCBI
mRatBN7.21392,578,843 - 92,587,079 (+)NCBI
RefSeq Acc Id: XM_039090558   ⟹   XP_038946486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,110,598 - 95,118,985 (+)NCBI
mRatBN7.21392,578,855 - 92,587,070 (+)NCBI
RefSeq Acc Id: NP_001020141   ⟸   NM_001024970
- UniProtKB: Q5BJN8 (UniProtKB/Swiss-Prot),   A6JGH9 (UniProtKB/TrEMBL),   A0A0G2KA69 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004350   ⟸   ENSRNOT00000004350
Ensembl Acc Id: ENSRNOP00000075283   ⟸   ENSRNOT00000078263
RefSeq Acc Id: XP_038946485   ⟸   XM_039090557
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038946486   ⟸   XM_039090558
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038946483   ⟸   XM_039090555
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q245 (UniProtKB/TrEMBL),   A0A0G2KA69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946482   ⟸   XM_039090554
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038946484   ⟸   XM_039090556
- Peptide Label: isoform X3
Protein Domains
SAP   SDE2-like   SDE2/SF3A3 SAP   Splicing regulator SDE2 ubiquitin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BJN8-F1-model_v2 AlphaFold Q5BJN8 1-448 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699062
Promoter ID:EPDNEW_R9587
Type:multiple initiation site
Name:Sde2_1
Description:SDE2 telomere maintenance homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01399,136,976 - 99,137,036EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305572 AgrOrtholog
BioCyc Gene G2FUF-17111 BioCyc
Ensembl Genes ENSRNOG00000003247 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000004350 ENTREZGENE
  ENSRNOT00000078263 ENTREZGENE
IMAGE_CLONE IMAGE:7324146 IMAGE-MGC_LOAD
InterPro RNA_Proc_DNA_Dmg_Regulator UniProtKB/Swiss-Prot
  SDE2-like_C_dom UniProtKB/Swiss-Prot
  SDE2-like_dom UniProtKB/Swiss-Prot
  Sde2_Ubi UniProtKB/Swiss-Prot
KEGG Report rno:289315 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109518 IMAGE-MGC_LOAD
NCBI Gene 289315 ENTREZGENE
PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 UniProtKB/Swiss-Prot
  SPLICING FACTOR SF3A-RELATED UniProtKB/Swiss-Prot
Pfam SDE2_2C UniProtKB/Swiss-Prot
  Sde2_C UniProtKB/Swiss-Prot
  Sde2_N_Ubi_vert UniProtKB/Swiss-Prot
PhenoGen Sde2 PhenoGen
RatGTEx ENSRNOG00000003247 RatGTEx
UniProt A0A0G2KA69 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q245 ENTREZGENE, UniProtKB/TrEMBL
  A6JGH9 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJN8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Sde2  spliceosome associated SDE2  Sde2  SDE2 telomere maintenance homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-13 Sde2  SDE2 telomere maintenance homolog  Sde2  SDE2 telomere maintenance homolog (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Sde2  SDE2 telomere maintenance homolog (S. pombe)  RGD1305572  similar to hypothetical protein MGC30618  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305572  similar to hypothetical protein MGC30618  RGD1305572_predicted  similar to hypothetical protein MGC30618 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305572_predicted  similar to hypothetical protein MGC30618 (predicted)  LOC289315_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC289315_predicted  similar to hypothetical protein MGC30618 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL