Advanced Search (OLGA)

Gene: B9d1 (B9 domain containing 1) Rattus norvegicus

Analyze

Symbol:

B9d1

Name:

B9 domain containing 1

RGD ID:

1305522

Description:

Predicted to enable hedgehog receptor activity. Predicted to be involved in cilium assembly and smoothened signaling pathway. Predicted to act upstream of or within several processes, including embryonic digit morphogenesis; in utero embryonic development; and neuroepithelial cell differentiation. Predicted to be located in ciliary transition zone; membrane; and microtubule organizing center. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 27 and Meckel syndrome. Orthologous to human B9D1 (B9 domain containing 1); INTERACTS WITH 1-naphthyl isothiocyanate; 4,4'-diaminodiphenylmethane; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

B9 domain-containing protein 1; B9 protein domain 1; endothelial precursor cells protein B9; endothelial precursor protein B9; Eppb9; LOC108348055; LOC287383; MGC189582

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	B9D1 (B9 domain containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, OMA, Panther, Treefam
Mus musculus (house mouse):	B9d1 (B9 protein domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	B9d1 (B9 domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	B9D1 (B9 domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	B9D1 (B9 domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	B9d1 (B9 domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	B9D1 (B9 domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	B9D1 (B9 domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	B9d1 (B9 domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ADGRG7 (adhesion G protein-coupled receptor G7)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	B9d1 (B9 protein domain 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	B9D1 (B9 domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	b9d1 (B9 protein domain 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	B9d1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mksr-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	mksr-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	b9d1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	46,685,410 - 46,698,580 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	46,686,133 - 46,695,428 (+)	Ensembl				GRCr8
mRatBN7.2	10	46,186,222 - 46,196,309 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	46,186,691 - 46,196,008 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	50,890,154 - 50,897,751 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	50,380,677 - 50,388,276 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	45,884,104 - 45,891,702 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	47,784,294 - 47,794,399 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	47,785,033 - 47,792,590 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	10	49,020,454 - 49,028,069 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	48,805,094 - 48,813,406 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	47,665,630 - 47,673,227 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	45,438,340 - 45,445,937 (+)	NCBI		Celera
RGSC_v3.1	10	47,679,244 - 47,686,849 (+)	NCBI
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

asphyxiating thoracic dystrophy (ISO)

ciliopathy (ISO)

Experimental Liver Cirrhosis (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Joubert syndrome (ISO)

Joubert syndrome 1 (ISO)

Joubert Syndrome 27 (ISO)

Meckel syndrome (ISO,ISS)

Meckel syndrome 1 (ISO)

Meckel Syndrome 9 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (EXP,ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

bisphenol F (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

gentamycin (EXP)

hydralazine (ISO)

indole-3-methanol (EXP)

L-methionine (ISO)

lead(0) (ISO)

leflunomide (ISO)

malathion (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

Moniliformin (ISO)

naphthalene (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

camera-type eye development (ISO)

cell projection organization (IEA)

cilium assembly (IBA,ISO,ISS)

embryonic digit morphogenesis (ISO)

in utero embryonic development (ISO)

neuroepithelial cell differentiation (ISO)

regulation of protein localization (ISO)

smoothened signaling pathway (ISO,ISS)

vasculature development (ISO)

Cellular Component

centrosome (IEA,ISO,ISS)

ciliary basal body (IEA,ISO,ISS)

ciliary transition zone (ISO,ISS)

cilium (IEA)

membrane (ISO)

MKS complex (IBA,ISO,ISS)

Molecular Function

hedgehog receptor activity (ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19208769	PMID:21725307	PMID:21763481	PMID:22179047

Genomics

Comparative Map Data

B9d1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	46,685,410 - 46,698,580 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	46,686,133 - 46,695,428 (+)	Ensembl				GRCr8
mRatBN7.2	10	46,186,222 - 46,196,309 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	46,186,691 - 46,196,008 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	50,890,154 - 50,897,751 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	50,380,677 - 50,388,276 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	45,884,104 - 45,891,702 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	47,784,294 - 47,794,399 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	47,785,033 - 47,792,590 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	10	49,020,454 - 49,028,069 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	48,805,094 - 48,813,406 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	47,665,630 - 47,673,227 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	45,438,340 - 45,445,937 (+)	NCBI		Celera
RGSC_v3.1	10	47,679,244 - 47,686,849 (+)	NCBI
Cytogenetic Map	10	q22	NCBI

B9D1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	19,334,695 - 19,377,913 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	19,334,308 - 19,378,193 (-)	Ensembl			hg38	GRCh38
GRCh37	17	19,238,008 - 19,281,226 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	19,187,076 - 19,206,639 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	17	16,659,306 - 16,678,871 (-)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	18,620,628 - 18,661,063 (-)	NCBI		HuRef
CHM1_1	17	19,249,620 - 19,290,243 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	19,282,742 - 19,325,948 (-)	NCBI		T2T-CHM13v2.0

B9d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	61,395,970 - 61,403,757 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	61,395,970 - 61,403,757 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	61,505,144 - 61,512,931 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	61,505,144 - 61,512,931 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	61,318,674 - 61,326,429 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	61,321,367 - 61,329,122 (+)	NCBI		MGSCv36	mm8
MGSCv36	11	61,935,152 - 61,942,907 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B2	NCBI
cM Map	11	37.96	NCBI

B9d1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	405,490 - 416,116 (+)	Ensembl
ChiLan1.0	NW_004955467	405,487 - 415,887 (+)	NCBI	ChiLan1.0	ChiLan1.0

B9D1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	54,342,904 - 54,387,377 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	59,157,477 - 59,184,823 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	31,735,065 - 31,779,454 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	36,914,964 - 36,943,949 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	36,914,969 - 36,941,391 (+)	Ensembl			panPan2	panpan1.1

B9D1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	40,854,110 - 40,866,828 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	40,854,127 - 40,866,824 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	40,995,253 - 41,007,972 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	40,961,728 - 40,974,447 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	40,961,746 - 40,976,003 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	40,930,044 - 40,942,763 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	40,876,816 - 40,889,535 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	41,068,924 - 41,081,643 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

B9d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	60,176,204 - 60,190,321 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936881	396,930 - 411,031 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936881	396,930 - 411,059 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B9D1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	60,162,713 - 60,171,961 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	60,162,656 - 60,171,586 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

B9D1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	17,925,741 - 17,945,879 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	17,925,134 - 17,945,878 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666059	2,905,391 - 2,927,264 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B9d1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	5,633,076 - 5,644,221 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624849	5,635,996 - 5,644,139 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in B9d1
114 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	498
Count of miRNA genes:	193
Interacting mature miRNAs:	227
Transcripts:	ENSRNOT00000003402, ENSRNOT00000067379, ENSRNOT00000075073
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35893263	52293000	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	29377046	52699134	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

RH130279

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	46,194,046 - 46,194,238 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	49,027,825 - 49,028,016	NCBI	Rnor6.0
Rnor_6.0	10	47,792,374 - 47,792,565	NCBI	Rnor6.0
Rnor_5.0	10	48,812,484 - 48,812,675	UniSTS	Rnor5.0
Rnor_5.0	10	47,564,868 - 47,565,059	UniSTS	Rnor5.0
RGSC_v3.4	10	47,672,985 - 47,673,176	UniSTS	RGSC3.4
Celera	10	45,445,695 - 45,445,886	UniSTS
RH 3.4 Map	10	527.99	UniSTS
Cytogenetic Map	10	q23	UniSTS

RH133115

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	46,186,119 - 46,186,299 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	49,019,899 - 49,020,078	NCBI	Rnor6.0
Rnor_6.0	10	47,784,448 - 47,784,627	NCBI	Rnor6.0
Rnor_5.0	10	48,804,558 - 48,804,737	UniSTS	Rnor5.0
Rnor_5.0	10	47,556,942 - 47,557,121	UniSTS	Rnor5.0
RGSC_v3.4	10	47,665,059 - 47,665,238	UniSTS	RGSC3.4
Celera	10	45,437,769 - 45,437,948	UniSTS
RH 3.4 Map	10	529.89	UniSTS
Cytogenetic Map	10	q23	UniSTS

RH136753

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	46,188,026 - 46,188,146 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	49,021,806 - 49,021,925	NCBI	Rnor6.0
Rnor_6.0	10	47,786,355 - 47,786,474	NCBI	Rnor6.0
Rnor_5.0	10	47,558,849 - 47,558,968	UniSTS	Rnor5.0
Rnor_5.0	10	48,806,465 - 48,806,584	UniSTS	Rnor5.0
RGSC_v3.4	10	47,666,966 - 47,667,085	UniSTS	RGSC3.4
Celera	10	45,439,676 - 45,439,795	UniSTS
Cytogenetic Map	10	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	18	49	61	132	89	11	48	36	32	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC169130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003402 ⟹ ENSRNOP00000003402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	46,686,824 - 46,693,745 (+)	Ensembl
mRatBN7.2 Ensembl	10	46,187,367 - 46,194,289 (+)	Ensembl
Rnor_6.0 Ensembl	10	49,020,454 - 49,028,069 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000067379 ⟹ ENSRNOP00000059672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	46,686,190 - 46,693,735 (+)	Ensembl
mRatBN7.2 Ensembl	10	46,186,733 - 46,194,279 (+)	Ensembl
Rnor_6.0 Ensembl	10	49,020,512 - 49,028,057 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075073 ⟹ ENSRNOP00000065889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	46,686,133 - 46,695,428 (+)	Ensembl
mRatBN7.2 Ensembl	10	46,186,691 - 46,196,008 (+)	Ensembl
Rnor_6.0 Ensembl	10	47,785,033 - 47,792,590 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084944 ⟹ ENSRNOP00000068934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	47,785,078 - 47,789,745 (+)	Ensembl

RefSeq Acc Id:

NM_001105786 ⟹ NP_001099256

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,686,148 - 46,693,745 (+)	NCBI
mRatBN7.2	10	46,186,691 - 46,194,289 (+)	NCBI
Rnor_6.0	10	47,785,019 - 47,792,616 (+)	NCBI
Rnor_5.0	10	48,805,094 - 48,813,406 (+)	NCBI
RGSC_v3.4	10	47,665,630 - 47,673,227 (+)	RGD
Celera	10	45,438,340 - 45,445,937 (+)	RGD

Sequence:

show sequence

CCATCTGTTTCCAAGACAACCCAGGAGCCTCCTGGCAAGGGCGCGCGGCCCAGCCTGCAATGGC
TGCAGCAAGTCCCAGTGTCTTCCTGCTCATGGTCAACGGGCAGGTAGAGAGCGCACAGTTTCCA
GAGTACGATGACCTCTACTGCAAGTACTGCTTTGTGTACGGCCAGGACTGGGCCCCAACAGCGG
GTCTGGAAGAAGGGATCTCACAGATAGCATCCAAGAGCCAAGATGTACGGCAAGCACTGGTGTG
GAACTTCCCTATCGACGTGACCTTTAAAAGTACCAACCCCTATGGCTGGCCACAAATTGTACTC
AGCGTGTATGGACCGGACGTGTTTGGGAATGACGTGGTCCGAGGCTATGGAGCAGTGCATGTGC
CCTTCTCTCCTGGACGGCACAAAAGGACCATCCCCATGTTTGTGCCAGAGTCTACATCTACACT
ACAGAAGTTCACAAGCTGGTTCATGGGACGTCGGCCAGAGTACACTGACCCCAAGGTGGTGGCC
CAGGGTGAAGGTCGGGAAGTGACCCGTGTTCGCTCTCAGGGATTTGTTACCCTCCTCTTCAATG
TGGTGACCAAGGACATGAAGAAGCTGGGCTATGATACTGGGCCTGTGGACACACAAGGAGTCCT
GAGTCCCAGCCTGCCACAGGGAAACCCACAATAAAAATGTCAGCTTTTCTCTCCACCACTGTGG
ACCAAATACCTTACAGCCCACACACAACCAAGGACATACCAACCTGGCTGAGAAGTGGGGGAGA
TAAAGATAGTTTTATATAATAAAGTGTCACTTTTTTTTCAGAG

hide sequence

RefSeq Acc Id:

XM_006246553 ⟹ XP_006246615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,685,410 - 46,698,580 (+)	NCBI
mRatBN7.2	10	46,186,651 - 46,196,309 (+)	NCBI

Sequence:

show sequence

AGAAGTCGTTCCCAAGTATTTTCCATTGGCCGGACCAGGACCAGGCAATGACGGCCCCCAGAGT
CGAGCTGGGGATCTAGAGGCAGAGACTAGCACTAAGCCACTCTGAATTAGACAGTGATAGAGTA
AGTGCAGTTGGATCCAAGCGCTAACAGATGCGTCTACTGAGGATGCTGGTGACTTGGGATCAAG
CTCTGATATCCCTGAGCTGCCAGTGATTCTCCAAAAATGGGTGATTGGTTCCGTGGGCTCCAGC
TTCTCATGCAGGAGCCAGGACTTGGACAAGTGGATTCTCCAAGTTTCAATGACAAGAGCCTCAA
AGGGCTAAAGGGCACATCCTTCACCTGAGGCAATGCACTGCGAGATGCCCGCTGGACCACACTG
CGCACTAGTCTCCCCAACTGTGGCGCCTGTGCGGTCGCTGCATGTGGCCACAGCGACATCTCCT
GGAGAGAGGTAACTCTAGCACGTGACCTTCCGCGAGCCTGAGTCCCGGTGCTGCTTCTCAGTAT
ACAGCTTTCCGGCCTGCGAGCTTCAAGCATGGCCAGGAGAGTGAAGTCACAGTCCCTGCGGGTC
CGAGGACCCGACCCTGGGGTTTAGGTTTCGCGCGACGGAAACGGAGGACGGGCCCCTGGGTCGT
AAACAACACTGCGCCTGCGCACTCTTGCCTTTACGCGAACTCGTCACCGCTTGAGAAATTTGTC
CTAGATGAGTTGCCATCTGTTTCCAAGACAACCCAGGAGCCTCCTGGCAAGGGCGCGCGGCCCA
GCCTGCAATGGCTGCAGCAAGTCCCAGTGTCTTCCTGCTCATGGTCAACGGGCAGGTAGAGAGC
GCACAGTTTCCAGAGTACGATGACCTCTACTGCAAGTACTGCTTTGTGTACGGCCAGGACTGGG
CCCCAACAGCGGGTCTGGAAGAAGGGATCTCACAGATAGCATCCAAGAGCCAAGATGTACGGCA
AGCACTGGTGTGGAACTTCCCTATCGACGTGACCTTTAAAAGTACCAACCCCTATGGCTGGCCA
CAAATTGTACTCAGCGTGTATGGACCGGACGTGTTTGGGAATGACGTGGTCCGAGGCTATGGAG
CAGTGCATGTGCCCTTCTCTCCTGGACGGCACAAAAGGACCATCCCCATGTTTGTGCCAGAGTC
TACATCTACACTACAGAAGTTCACAAGCTGGTTCATGGGACGTCGGCCAGAGTACACTGACCCC
AAGGTGGTGGCCCAGGGTGAAGGTCGGGAAGAGATTCTGGGGCCTGCATTTCTTGATTTCTTCA
TTAGCACCTCTCTAACAGAAACAGGCCTGGCGCCCAACAGGATGTACCCAGTAGAATGTCATGC
TGGAGTGGAGGCCTCTCCAGGACTGCTGAGCAGTTTGCACAGAGCTGACCCCCCCTTTCAGTGT
CTTCTTCAGCATCAGGAAGTTAGTCACTTGCTCCATGGCTGGCACTGTGACTATTTACCGTATT
GTTAGCAGACTCCCAGGGCCCTGAGCGGCACCTGCCTTCCACCATGCATTCCTGTGCCCTACTT
CCATCCTGATCTTCGTGTGCTGCCTGAGGATAGGGAAAGAACCATCCCAGGCAGGAGACTACCA
CCAGTGCGGGTTCCGGGCAAGCGCCGTAGCCCAACACCCTGACATCTGTGGGCCCCTAGTTTTC
TCCACGCATGCTGGTAGTGTGACACATGAATTAACATGTTGTCAAACTACTCCACAACTGCTGG
TCTCACCAAAGCTTGCTGTGGTGCTGTCTTCTCCGCTGTTCTTGTGAAGCACCTCTTCCACGCC
CTCCACCCTTGCAGAAGGTATAGACCTCACAGTTCAGCAACTTCATCACCCAAGGTCTCTCCCT
CAGTCCAAAACTCCCTTCTACACCTGATGTCCTTTCTGTACACTAGCCCTCATGGCTGTCAAGT
CAAGGCACAGAAATATACCATTTCCCAAGAGGCTCTTGCATGTCTGCCAGTCACGGTGAGAAAC
CACACAGAGGAGAGCTTTGGAGCCCAGTGACTGGAGCATATCTGGAATGTAGGATTATACTAGA
CATGTGACCATTAAGACACATGACACCTAGGTTTATCGTTTACTTACTGTCACAGCTGTATCTA
CCAGACTGTTCACCTTTTCCTAATCAAACCATAAGACTACATTTCCTAGGCCTCTTCTGTCACA
CTGTTAAACTTATGAAATGCTGGAAGGTTGTTCACCACATAGAAAGCCTGACCCCTTAAACCTC
CAGAGTTGCCCTTACTCCTGTCCATGGAGCCCTTGGACATCCACACTGAAGGCAGCAGCATGAG
AGAATAGTGTGGTGTCAGATTCCAGCCAGAAGGGGTGCTTCAAGGATACCGGTGCTGGACATTT
TGTGGGAGTAAATTCTATTATGTTCTATCCTGAAGAGAAAAAAGGGAGGCAATGGGACTTAGTC
CTGTATGAACTCTTGACAAAGAACTGTTATAAGGAAAGAGCTTATGGTGTGAGTGAAAATCAGA
AGGTATGGCACACAGCACAGACTGCAGTGGGGAGTAGGCAGGAGTGAAGAACACACACTCAACA
GCACAGAGCCACTGGCAGAGCTCAAGGAAGGTCCCATGGCTGAGCCAACAGCTCCAGGGAGGAC
AGCAGCATATGCCAGAAAAGCAAAGTTTGGGGAAAAAAACAGGCCAGTCTGTAAAATAAGAAAG
GAACAGAAACAAAACTAAAGAATATTAACATCGTAAGATTAGGAAAGGACTGGACAGACAACTC
AGCAGAGAGCATGGCTGTTCTTCTATTAGACCAGGATTTGACTTAAGTCCTGGCAACCATATGG
TAGTTCATAGCTGTCAGTCACACCAGTCTGAGGGCATCCAATGGCATCTTCTGGCCTCCAAGAG
TGGCAGACATGCACATAGCTTAGACATATATTCAAACAAAACACTCATACACAATAAAATTTAA
AAAAAAAAAAGGCTAGGTGAGAGGACTCTAAAACCCAAATATAAGACTTAAAATTAGGGGTTGG
GGATTTAGCTCAGTGGTAGAGCGCT

hide sequence

RefSeq Acc Id:

XM_006246554 ⟹ XP_006246616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,685,410 - 46,698,580 (+)	NCBI
mRatBN7.2	10	46,186,247 - 46,196,309 (+)	NCBI

Sequence:

show sequence

ATTCATTAAAGAAGTCGTTCCCAAGTATTTTCCATTGGCCGGACCAGGACCAGGCAATGACGGC
CCCCAGAGTCGAGCTGGGGATCTAGAGGCAGAGACTAGCACTAAGCCACTCTGAATTAGACAGT
GATAGAGTAAGTGCAGTTGGATCCAAGCGCTAACAGATGCGTCTACTGAGGATGCTGGTGACTT
GGGATCAAGCTCTGATATCCCTGAGCTGCCAGTGATTCTCCAAAAATGGGTGATTGGTTCCGTG
GGCTCCAGCTTCTCATGCAGGAGCCAGGACTTGGACAAGTGGATTCTCCAAGTTTCAATGACAA
GAGCCTCAAAGGGCTAAAGGGCACATCCTTCACCTGAGGCAATGCACTGCGAGATGCCCGCTGG
ACCACACTGCGCACTAGTCTCCCCAACTGTGGCGCCTGTGCGGTCGCTGCATGTGGCCACAGCG
ACATCTCCTGGAGAGAGGTAACTCTAGCACGTGACCTTCCGCGAGCCTGAGTCCCGGTGCTGCT
TCTCAGTATACAGCTTTCCGGCCTGCGAGCTTCAAGCATGGCCAGGAGAGTGAAGTCACAGTCC
CTGCGGGTCCGAGGACCCGACCCTGGGGTTTAGGTTTCGCGCGACGGAAACGGAGGACGGGCCC
CTGGGTCGTAAACAACACTGCGCCTGCGCACTCTTGCCTTTACGCGAACTCGTCACCGCTTGAG
AAATTTGTCCTAGATGAGTTGCCATCTGTTTCCAAGACAACCCAGGAGCCTCCTGGCAAGGGCG
CGCGGCCCAGCCTGCAATGGCTGCAGCAAGTCCCAGTGTCTTCCTGCTCATGGTCAACGGGCAG
GTAGAGAGCGCACAGTTTCCAGAGTACGATGACCTCTACTGCAAGTACTGCTTTGTGTACGGCC
AGGACTGGGCCCCAACAGCGGGTCTGGAAGAAGGGATCTCACAGATAGCATCCAAGAGCCAAGA
TGTACGGCAAGCACTGGTGTGGAACTTCCCTATCGACGTGACCTTTAAAAGTACCAACCCCTAT
GGCTGGCCACAAATTGTACTCAGCGTGTATGGACCGGACGTGTTTGGGAATGACGTGGTCCGAG
GCTATGGAGCAGTGCATGTGCCCTTCTCTCCTGGACGCTGGTTCATGGGACGTCGGCCAGAGTA
CACTGACCCCAAGGTGGTGGCCCAGGGTGAAGGTCGGGAAGAGATTCTGGGGCCTGCATTTCTT
GATTTCTTCATTAGCACCTCTCTAACAGAAACAGGCCTGGCGCCCAACAGGATGTACCCAGTAG
AATGTCATGCTGGAGTGGAGGCCTCTCCAGGACTGCTGAGCAGTTTGCACAGAGCTGACCCCCC
CTTTCAGTGTCTTCTTCAGCATCAGGAAGTTAGTCACTTGCTCCATGGCTGGCACTGTGACTAT
TTACCGTATTGTTAGCAGACTCCCAGGGCCCTGAGCGGCACCTGCCTTCCACCATGCATTCCTG
TGCCCTACTTCCATCCTGATCTTCGTGTGCTGCCTGAGGATAGGGAAAGAACCATCCCAGGCAG
GAGACTACCACCAGTGCGGGTTCCGGGCAAGCGCCGTAGCCCAACACCCTGACATCTGTGGGCC
CCTAGTTTTCTCCACGCATGCTGGTAGTGTGACACATGAATTAACATGTTGTCAAACTACTCCA
CAACTGCTGGTCTCACCAAAGCTTGCTGTGGTGCTGTCTTCTCCGCTGTTCTTGTGAAGCACCT
CTTCCACGCCCTCCACCCTTGCAGAAGGTATAGACCTCACAGTTCAGCAACTTCATCACCCAAG
GTCTCTCCCTCAGTCCAAAACTCCCTTCTACACCTGATGTCCTTTCTGTACACTAGCCCTCATG
GCTGTCAAGTCAAGGCACAGAAATATACCATTTCCCAAGAGGCTCTTGCATGTCTGCCAGTCAC
GGTGAGAAACCACACAGAGGAGAGCTTTGGAGCCCAGTGACTGGAGCATATCTGGAATGTAGGA
TTATACTAGACATGTGACCATTAAGACACATGACACCTAGGTTTATCGTTTACTTACTGTCACA
GCTGTATCTACCAGACTGTTCACCTTTTCCTAATCAAACCATAAGACTACATTTCCTAGGCCTC
TTCTGTCACACTGTTAAACTTATGAAATGCTGGAAGGTTGTTCACCACATAGAAAGCCTGACCC
CTTAAACCTCCAGAGTTGCCCTTACTCCTGTCCATGGAGCCCTTGGACATCCACACTGAAGGCA
GCAGCATGAGAGAATAGTGTGGTGTCAGATTCCAGCCAGAAGGGGTGCTTCAAGGATACCGGTG
CTGGACATTTTGTGGGAGTAAATTCTATTATGTTCTATCCTGAAGAGAAAAAAGGGAGGCAATG
GGACTTAGTCCTGTATGAACTCTTGACAAAGAACTGTTATAAGGAAAGAGCTTATGGTGTGAGT
GAAAATCAGAAGGTATGGCACACAGCACAGACTGCAGTGGGGAGTAGGCAGGAGTGAAGAACAC
ACACTCAACAGCACAGAGCCACTGGCAGAGCTCAAGGAAGGTCCCATGGCTGAGCCAACAGCTC
CAGGGAGGACAGCAGCATATGCCAGAAAAGCAAAGTTTGGGGAAAAAAACAGGCCAGTCTGTAA
AATAAGAAAGGAACAGAAACAAAACTAAAGAATATTAACATCGTAAGATTAGGAAAGGACTGGA
CAGACAACTCAGCAGAGAGCATGGCTGTTCTTCTATTAGACCAGGATTTGACTTAAGTCCTGGC
AACCATATGGTAGTTCATAGCTGTCAGTCACACCAGTCTGAGGGCATCCAATGGCATCTTCTGG
CCTCCAAGAGTGGCAGACATGCACATAGCTTAGACATATATTCAAACAAAACACTCATACACAA
TAAAATTTAAAAAAAAAAAAGGCTAGGTGAGAGGACTCTAAAACCCAAATATAAGACTTAAAAT
TAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCT

hide sequence

RefSeq Acc Id:

XM_017597644 ⟹ XP_017453133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,685,410 - 46,693,746 (+)	NCBI
mRatBN7.2	10	46,186,657 - 46,194,286 (+)	NCBI

Sequence:

show sequence

TCCCAAGTATTTTCCATTGGCCGGACCAGGACCAGGCAATGACGGCCCCCAGAGTCGAGCTGGG
GATCTAGAGGCAGAGACTAGCACTAAGCCACTCTGAATTAGACAGTGATAGAGTAAGTGCAGTT
GGATCCAAGCGCTAACAGATGCGTCTACTGAGGATGCTGGTGACTTGGGATCAAGCTCTGATAT
CCCTGAGCTGCCAGTGATTCTCCAAAAATGGGTGATTGGTTCCGTGGGCTCCAGCTTCTCATGC
AGGAGCCAGGACTTGGACAAGTGGATTCTCCAAGTTTCAATGACAAGAGCCTCAAAGGGCTAAA
GGGCACATCCTTCACCTGAGGCAATGCACTGCGAGATGCCCGCTGGACCACACTGCGCACTAGT
CTCCCCAACTGTGGCGCCTGTGCGGTCGCTGCATGTGGCCACAGCGACATCTCCTGGAGAGAGG
TAACTCTAGCACGTGACCTTCCGCGAGCCTGAGTCCCGGTGCTGCTTCTCAGTATACAGCTTTC
CGGCCTGCGAGCTTCAAGCATGGCCAGGAGAGTGAAGTCACAGTCCCTGCGGGTCCGAGGACCC
GACCCTGGGGTTTAGGTTTCGCGCGACGGAAACGGAGGACGGGCCCCTGGGTCGTAAACAACAC
TGCGCCTGCGCACTCTTGCCTTTACGCGAACTCGTCACCGCTTGAGAAATTTGTCCTAGATGAG
TTGCCATCTGTTTCCAAGACAACCCAGGAGCCTCCTGGCAAGGGCGCGCGGCCCAGCCTGCAAT
GGCTGCAGCAAGTCCCAGTGTCTTCCTGCTCATGGTCAACGGGCAGGTAGAGAGCGCACAGTTT
CCAGAGTACGATGACCTCTACTGCAAGTACTGCTTTGTGTACGGCCAGGACTGGGCCCCAACAG
CGGGTCTGGAAGAAGGGATCTCACAGATAGCATCCAAGAGCCAAGATGTACGGCAAGCACTGGT
GTGGAACTTCCCTATCGACGTGACCTTTAAAAGTACCAACCCCTATGGCTGGCCACAAATTGTA
CTCAGCGTGTATGGACCGGACGTGTTTGGGAATGACGTGGTCCGAGGCTATGGAGCAGTGCATG
TGCCCTTCTCTCCTGGACGCTGGTTCATGGGACGTCGGCCAGAGTACACTGACCCCAAGGTGGT
GGCCCAGGGTGAAGGTCGGGAAGTGACCCGTGTTCGCTCTCAGGGATTTGTTACCCTCCTCTTC
AATGTGGTGACCAAGGACATGAAGAAGCTGGGCTATGATACTGGGCCTGTGGACACACAAGGAG
TCCTGAGTCCCAGCCTGCCACAGGGAAACCCACAATAAAAATGTCAGCTTTTCTCTCCACCACT
GTGGACCAAATACCTTACAGCCCACACACAACCAAGGACATACCAACCTGGCTGAGAAGTGGGG
GAGATAAAGATAGTTTTATATAATAAAGTGTCACTTTTTTTTCAGAGA

hide sequence

RefSeq Acc Id:

XM_039085411 ⟹ XP_038941339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,685,410 - 46,693,746 (+)	NCBI
mRatBN7.2	10	46,186,247 - 46,194,286 (+)	NCBI

RefSeq Acc Id:

XM_039085412 ⟹ XP_038941340

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,685,410 - 46,693,219 (+)	NCBI
mRatBN7.2	10	46,186,657 - 46,193,767 (+)	NCBI

RefSeq Acc Id:

XM_039085413 ⟹ XP_038941341

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,685,410 - 46,698,580 (+)	NCBI
mRatBN7.2	10	46,186,247 - 46,194,475 (+)	NCBI

RefSeq Acc Id:

XM_039085415 ⟹ XP_038941343

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,685,410 - 46,693,746 (+)	NCBI
mRatBN7.2	10	46,186,247 - 46,194,290 (+)	NCBI

RefSeq Acc Id:

XM_039085416 ⟹ XP_038941344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,685,410 - 46,698,580 (+)	NCBI
mRatBN7.2	10	46,186,222 - 46,194,475 (+)	NCBI

RefSeq Acc Id:

XM_063268624 ⟹ XP_063124694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,687,393 - 46,694,446 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099256	(Get FASTA)	NCBI Sequence Viewer
	XP_006246615	(Get FASTA)	NCBI Sequence Viewer
	XP_006246616	(Get FASTA)	NCBI Sequence Viewer
	XP_017453133	(Get FASTA)	NCBI Sequence Viewer
	XP_038941339	(Get FASTA)	NCBI Sequence Viewer
	XP_038941340	(Get FASTA)	NCBI Sequence Viewer
	XP_038941341	(Get FASTA)	NCBI Sequence Viewer
	XP_038941343	(Get FASTA)	NCBI Sequence Viewer
	XP_038941344	(Get FASTA)	NCBI Sequence Viewer
	XP_063124694	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI69130	(Get FASTA)	NCBI Sequence Viewer
	EDM04688	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059672
	ENSRNOP00000065889
GenBank Protein	P0C5J2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001099256 ⟸ NM_001105786

- UniProtKB:

P0C5J2 (UniProtKB/Swiss-Prot), A6HF83 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAASPSVFLLMVNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGLEEGISQIASKSQDVRQAL
VWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTIPMFVPESTS
TLQKFTSWFMGRRPEYTDPKVVAQGEGREVTRVRSQGFVTLLFNVVTKDMKKLGYDTGPVDTQG
VLSPSLPQGNPQ

hide sequence

RefSeq Acc Id:	XP_038941344 ⟸ XM_039085416
- Peptide Label:	isoform X9

RefSeq Acc Id:

XP_006246616 ⟸ XM_006246554

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAAASPSVFLLMVNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGLEEGISQIASKSQDVRQAL
VWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRWFMGRRPEYTDPKV
VAQGEGREEILGPAFLDFFISTSLTETGLAPNRMYPVECHAGVEASPGLLSSLHRADPPFQCLL
QHQEVSHLLHGWHCDYLPYC

hide sequence

RefSeq Acc Id:	XP_038941341 ⟸ XM_039085413
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038941343 ⟸ XM_039085415
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038941339 ⟸ XM_039085411
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_006246615 ⟸ XM_006246553
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QWM0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAASPSVFLLMVNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGLEEGISQIASKSQDVRQAL VWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTIPMFVPESTS TLQKFTSWFMGRRPEYTDPKVVAQGEGREEILGPAFLDFFISTSLTETGLAPNRMYPVECHAGV EASPGLLSSLHRADPPFQCLLQHQEVSHLLHGWHCDYLPYC hide sequence

RefSeq Acc Id:	XP_017453133 ⟸ XM_017597644
- Peptide Label:	isoform X3
- Sequence:	show sequence MAAASPSVFLLMVNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGLEEGISQIASKSQDVRQAL VWNFPIDVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRWFMGRRPEYTDPKV VAQGEGREVTRVRSQGFVTLLFNVVTKDMKKLGYDTGPVDTQGVLSPSLPQGNPQ hide sequence

RefSeq Acc Id:	XP_038941340 ⟸ XM_039085412
- Peptide Label:	isoform X5
- UniProtKB:	B5DFN6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000003402 ⟸ ENSRNOT00000003402

Ensembl Acc Id:

ENSRNOP00000059672 ⟸ ENSRNOT00000067379

Ensembl Acc Id:

ENSRNOP00000068934 ⟸ ENSRNOT00000084944

Ensembl Acc Id:

ENSRNOP00000065889 ⟸ ENSRNOT00000075073

RefSeq Acc Id:	XP_063124694 ⟸ XM_063268624
- Peptide Label:	isoform X8

Protein Domains

C2 B9-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P0C5J2-F1-model_v2	AlphaFold	P0C5J2	1-204	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305522	AgrOrtholog
BioCyc Gene	G2FUF-24795	BioCyc
Ensembl Genes	ENSRNOG00000002462	Ensembl, ENTREZGENE
	ENSRNOG00000047790	Ensembl
Ensembl Transcript	ENSRNOT00000067379	ENTREZGENE
	ENSRNOT00000075073	ENTREZGENE
InterPro	B9_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:287383	UniProtKB/Swiss-Prot
NCBI Gene	287383	ENTREZGENE
PANTHER	B9 DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR12968	UniProtKB/Swiss-Prot
Pfam	B9-C2	UniProtKB/Swiss-Prot
PhenoGen	B9d1	PhenoGen
PROSITE	PS51381	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000002462	RatGTEx
	ENSRNOG00000047790	RatGTEx
UniProt	A0A8L2QWM0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UHN1_RAT	UniProtKB/TrEMBL
	A6HF83	ENTREZGENE, UniProtKB/TrEMBL
	B5DFN6	ENTREZGENE, UniProtKB/TrEMBL
	B9D1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	B9d1	B9 domain containing 1	LOC108348055	B9 domain-containing protein 1	Data merged from RGD:11475921	737654	PROVISIONAL
2016-08-02	LOC108348055	B9 domain-containing protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2016-05-20	B9d1	B9 domain containing 1	B9d1	B9 protein domain 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	B9d1	B9 protein domain 1	Eppb9_predicted	endothelial precursor protein B9 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Eppb9_predicted	endothelial precursor protein B9 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM