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Gene: Senp7 (SUMO specific peptidase 7) Rattus norvegicus

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Symbol:

Senp7

Name:

SUMO specific peptidase 7

RGD ID:

1305510

Description:

Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in antiviral innate immune response and protein desumoylation. Predicted to be active in nucleus; postsynaptic cytosol; and presynaptic cytosol. Orthologous to human SENP7 (SUMO specific peptidase 7); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC288167; sentrin-specific protease 7; sentrin/SUMO-specific protease SENP7; SUMO-1-specific protease 2; SUMO1/sentrin specific peptidase 7; SUMO1/sentrin specific protease 7; Sumo1/sentrin/SMT3 specific peptidase 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SENP7 (SUMO specific peptidase 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Senp7 (SUMO1/sentrin specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Senp7 (SUMO specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SENP7 (SUMO specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SENP7 (SUMO specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Senp7 (SUMO specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SENP7 (SUMO specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SENP7 (SUMO specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Senp7 (SUMO specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Senp7 (SUMO specific peptidase 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SENP7 (SUMO specific peptidase 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Senp7 (SUMO1/sentrin specific peptidase 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	senp7b (SUMO specific peptidase 7b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	si:dkey-100n23.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12717	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12717	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ULP2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	ulp-2	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ulp-4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	senp7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	57,892,801 - 58,053,213 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	57,787,914 - 58,033,766 (-)	Ensembl				GRCr8
mRatBN7.2	11	44,423,733 - 44,584,129 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	44,423,735 - 44,564,711 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	53,200,757 - 53,341,107 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	45,862,371 - 46,002,722 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	44,986,531 - 45,126,884 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	46,880,928 - 47,047,052 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	46,880,928 - 47,027,667 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	50,062,235 - 50,210,519 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	45,390,458 - 45,539,624 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	44,175,376 - 44,315,364 (-)	NCBI		Celera
RGSC_v3.1	11	45,448,065 - 45,596,923 (-)	NCBI
Cytogenetic Map	11	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

arthrogryposis multiplex congenita (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clorgyline (ISO)

clotrimazole (EXP)

crocidolite asbestos (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

ketamine (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenytoin (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

resveratrol (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

succimer (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antiviral innate immune response (ISO,ISS)

immune system process (IEA)

innate immune response (IEA)

protein desumoylation (IBA,ISO,ISS)

proteolysis (IEA)

visual perception (IEA)

Cellular Component

cell periphery (IEA)

cytoplasm (IBA,IEA,ISO,ISS)

interphotoreceptor matrix (IEA)

nucleoplasm (ISO)

nucleus (IBA,ISO)

photoreceptor inner segment (IEA)

photoreceptor outer segment (IEA)

postsynaptic cytosol (ISO)

presynaptic cytosol (ISO)

Molecular Function

cysteine-type peptidase activity (IEA)

heparin binding (IEA)

hydrolase activity (IEA)

peptidase activity (IEA)

protein binding (ISO)

SUMO-specific endopeptidase activity (IBA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Senp7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	57,892,801 - 58,053,213 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	57,787,914 - 58,033,766 (-)	Ensembl				GRCr8
mRatBN7.2	11	44,423,733 - 44,584,129 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	44,423,735 - 44,564,711 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	53,200,757 - 53,341,107 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	45,862,371 - 46,002,722 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	44,986,531 - 45,126,884 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	46,880,928 - 47,047,052 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	46,880,928 - 47,027,667 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	50,062,235 - 50,210,519 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	45,390,458 - 45,539,624 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	44,175,376 - 44,315,364 (-)	NCBI		Celera
RGSC_v3.1	11	45,448,065 - 45,596,923 (-)	NCBI
Cytogenetic Map	11	q12	NCBI

SENP7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	101,324,205 - 101,513,212 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	101,324,205 - 101,513,241 (-)	Ensembl			hg38	GRCh38
GRCh37	3	101,043,049 - 101,232,056 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	102,525,807 - 102,714,775 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	102,525,811 - 102,714,775	NCBI
Celera	3	99,434,719 - 99,624,210 (-)	NCBI		Celera
Cytogenetic Map	3	q12.3	NCBI
HuRef	3	98,411,695 - 98,600,626 (-)	NCBI		HuRef
CHM1_1	3	101,006,076 - 101,195,158 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	104,030,073 - 104,219,481 (-)	NCBI		T2T-CHM13v2.0

Senp7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	55,869,306 - 56,010,394 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	55,868,701 - 56,010,375 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	56,057,526 - 56,190,031 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	56,048,338 - 56,190,012 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	56,075,522 - 56,190,124 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	56,000,360 - 56,114,962 (+)	NCBI		MGSCv36	mm8
Celera	16	56,384,282 - 56,499,373 (+)	NCBI		Celera
Cytogenetic Map	16	C1.1	NCBI
cM Map	16	33.82	NCBI

Senp7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	2,924,108 - 3,092,020 (-)	Ensembl
ChiLan1.0	NW_004955427	2,925,159 - 3,091,932 (-)	NCBI	ChiLan1.0	ChiLan1.0

SENP7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	99,269,721 - 99,471,316 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	99,274,502 - 99,475,372 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	98,422,018 - 98,623,832 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	105,101,733 - 105,302,921 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	105,103,473 - 105,283,838 (-)	Ensembl			panPan2	panpan1.1

SENP7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	7,787,910 - 7,927,679 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	7,787,910 - 7,927,550 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	7,942,370 - 8,082,059 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	7,926,759 - 8,066,944 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	7,926,788 - 8,066,929 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	7,815,014 - 7,954,343 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	7,860,814 - 8,000,503 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	8,200,385 - 8,340,979 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Senp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	148,942,864 - 149,080,606 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936630	1,840,732 - 1,979,060 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936630	1,840,761 - 1,978,500 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SENP7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	157,521,784 - 157,672,814 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	157,521,778 - 157,672,818 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	166,985,019 - 167,153,326 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SENP7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	79,372,335 - 79,557,319 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	79,462,837 - 79,557,871 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	86,999,541 - 87,191,689 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Senp7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624789	15,182,645 - 15,397,045 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624789	15,182,709 - 15,397,642 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Senp7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	40,188,021 - 40,314,270 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Senp7
666 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	213
Count of miRNA genes:	143
Interacting mature miRNAs:	173
Transcripts:	ENSRNOT00000044177
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	46443168	91443168	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

D11Got40

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	44,476,528 - 44,476,674 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	46,932,957 - 46,933,104	NCBI	Rnor6.0
Rnor_5.0	11	50,114,262 - 50,114,409	UniSTS	Rnor5.0
RGSC_v3.4	11	45,443,816 - 45,443,962	RGD	RGSC3.4
RGSC_v3.4	11	45,443,817 - 45,443,964	UniSTS	RGSC3.4
Celera	11	44,228,212 - 44,228,360	UniSTS
RGSC_v3.1	11	45,501,405 - 45,501,551	RGD
RH 3.4 Map	11	339.9	UniSTS
RH 3.4 Map	11	339.9	RGD
RH 2.0 Map	11	280.1	RGD
Cytogenetic Map	11	q12	UniSTS

RH131361

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	44,423,941 - 44,424,121 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	46,881,135 - 46,881,314	NCBI	Rnor6.0
Rnor_5.0	11	50,062,442 - 50,062,621	UniSTS	Rnor5.0
RGSC_v3.4	11	45,390,665 - 45,390,844	UniSTS	RGSC3.4
Celera	11	44,175,583 - 44,175,762	UniSTS
RH 3.4 Map	11	320.0	UniSTS
Cytogenetic Map	11	q12	UniSTS

Expression

RNA-SEQ Expression

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alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044177 ⟹ ENSRNOP00000043376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,892,801 - 58,033,766 (-)	Ensembl
mRatBN7.2 Ensembl	11	44,423,735 - 44,564,711 (-)	Ensembl
Rnor_6.0 Ensembl	11	46,880,928 - 47,027,667 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000044900 ⟹ ENSRNOP00000046981

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,787,914 - 57,887,450 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094394 ⟹ ENSRNOP00000092307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,787,914 - 57,887,450 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103062 ⟹ ENSRNOP00000083635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,790,516 - 57,887,450 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106202 ⟹ ENSRNOP00000084584

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,892,801 - 58,033,766 (-)	Ensembl
mRatBN7.2 Ensembl	11	44,423,748 - 44,564,673 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113252 ⟹ ENSRNOP00000083696

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,892,801 - 58,033,766 (-)	Ensembl
mRatBN7.2 Ensembl	11	44,423,748 - 44,558,462 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114384 ⟹ ENSRNOP00000080672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,892,801 - 58,020,442 (-)	Ensembl
mRatBN7.2 Ensembl	11	44,423,748 - 44,551,379 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117624 ⟹ ENSRNOP00000082802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,892,801 - 58,033,766 (-)	Ensembl
mRatBN7.2 Ensembl	11	44,423,748 - 44,564,673 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155760 ⟹ ENSRNOP00000109389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,787,914 - 57,894,567 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167090 ⟹ ENSRNOP00000098682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	57,787,914 - 57,887,450 (-)	Ensembl

RefSeq Acc Id:

NM_001105888 ⟹ NP_001099358

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	57,892,801 - 58,033,766 (-)	NCBI
mRatBN7.2	11	44,423,733 - 44,564,699 (-)	NCBI
Rnor_6.0	11	46,880,928 - 47,027,667 (-)	NCBI
Rnor_5.0	11	50,062,235 - 50,210,519 (-)	NCBI
RGSC_v3.4	11	45,390,458 - 45,539,624 (-)	RGD
Celera	11	44,175,376 - 44,315,364 (-)	RGD

Sequence:

show sequence

GAGGCGACTACTAGTGCGCAAGCGCGAATCCCACTTCTGGCTTTCTCTCTTCCCCTCCCCCTCC
CTTCCCCAGCCCGAGGGGTCCTGAGGTGACAGCGCCTGGAAGTGGGACTGGAGGAGCTGGCGGT
GGAGAAGATGGATAGGGCCAGGCCTGGGCGTCGGCGAGCTTCGTCAGAGATTGTTACAGAGGGA
AAAAGGAAAAAGTCATCACCTGCTGATTTACAGAAGATAACGAAGTTGTTAACTGTAAAGTCAG
AGGATGTTCTTGCTCAGTCACCACTGCCCAAGCTCAGAGGCTCAGAATGCTGGTGGACAAGAAG
CCTAAGAAATAAAGTCATCTGTCTAGACCACAAAACCACAAAAGCTGCCCATGGGTGTCCTCCT
AAAGCATTACCAAAAAGGCATCTCAAAGTTATGTTGACGAATGTTCTATGGACGGACTTAGGAC
GAGAATTCAGAAAGACCCTGCCTAGAAATGATGCTAAGTTATGTGATACCAGCAAGGTGCAATC
AGACTCATTGCCTTCGACATCTGTTGACAGCATAGAGACATGTCAAAGATTAGATCCTCTTCAC
CAAAGCCTTAATTTATCTGAAAGGATACCCAGAGTTATATTGACGGATATTCGGCAGACAGAAT
TAGGAAGAAAATACTTAAAGATTCCATCTGTAACTGAGGCCAGTTTGAGTGATACAGCCAGCCC
GAAGTCAGAGGAACTTTCTTCGTCAGCCGATGGCAGCTTAGAGTCTTGTCAGAATGTAAATCAT
CTCAAGAGCTTTTTATCTGAAAGGGGCTCAAAACCAAGTAGGACAGGTGACATTTCTGCAAAGG
AGGCTGCAAATGGGAGACAGGAGCAGGGGGATGATGGAGACATCGCACCTGAGATGGTTACCCC
TCAGTCTAAAGACTTTAATAGTGGAAATAAAGGTGATTATCATGAAGAGGGGACCAGCAACAAG
AACACTTCATATTCTCATTCAGAAACGGACCATACTCCAGTTTCCAGGAAGAGAAAGAAAAGGG
GAAGAAGTAATTTTCATAATTCTCATAATCCTAAGTCTTCTGTGGATAAGTCAACAGAATATAT
AAAAGAAGAAGAAAATGAGTCTACAGTCTCCAGTAAGCTTGAAGAGTCCAATGAAGACTCTCAC
CAGGACCCAGCACCACCCGAAGGACTCACTCCGGACTCTTTGGAGACCGAGGCCACTAACGTGT
GCTCATTCGTGGTTCAGGAGCCAGATGTTAGTGCTGCCTCTGGAAGGGCCTGCTCACCCAACAA
AAGCTCGGAGAGCTCTGTTTCTAGTGAAGTGGCAGAGAATTCTTCGGCGGCTGAGAAGGGTGAG
GCATCGACTGTAAAGGAAGCACCTCCTCCAGGAGGAAACAGTGAAGAGAACCAGTTGTTGATGT
CAGCTGAGCCAATTGTTGTTTCCAGTGACGAAGAAGGACCGGTTGAACATAAGAATTCAGTAAT
TCTAAAATTACAGCCTTCTCAAGATTATGAATTTATGAGTGAAAATCAGACTACTTCTGATCCA
CAGTTGTCAGAATTAATGCTGGGTGCATGTGAATCTGTACAGGTATCATCTGAATTATGTCCGT
ACAATCCTGACATGGAAAACATTTCTTGTATTAACCCTAATAGTGAAATGGATCTGAAATTGGA
TTTCATATTTACTTGTGTGTATATTGGTAAAATAAAAGGAACTTCAAAAGGTTGTATCACGTTC
ACAAAGAAGTATATTAAAATCCCATTTCAAGTGTCTATGAATGAGATTTCACTGACTGTGGACA
CGGCACGTTTAAAGAGGTTCGGGTTATGGGAAAGCAAGGATGATGACCACAGTAAGAGGAGCCA
TGCTATCCTTTTCCTCTGGGTTTCCTCAAACTACCTTCAAGACATTCAGACCCAGTTAGAAAAC
CCTATGCTAAGCCAGCAATCAAAAGCCAATGAATTCATTTTCCTTGAGTTAAATAGTCCCATTT
CACAAAGAGAAGAATTGAAATTGAAAGATATTATGATGGAAATCGGTGCGACAAATGGAGAATT
ACAGCTCTCCTGTCCGTTGCCCTGGGTTCAGGCATTTCCTTTGTTTCAGGATCTCTCTCCACAA
GAAATCTCTTTTCTTCACTATTACTGTGCTTCAGCTTCCTCTTTCCCTGCTGTTGCTGGAGCAG
ACATGAAGAAGAAGCCAGTGTCTCAGCCCTCAAATGCAGATGTCGTCAAGCCTACTTACACCTT
TCTACATAAACAAAGCAGTGGCTGCTACTCACTGTCTATTACTTCAAGTCCAGATGAAGAATGG
CGAGAAGTCAGGAACACTGGACCCGTTCAGAAGTTGATTGTGTATCCTCCACCACCTACTAAGG
GAGGCTTGGGAGTAACTAATGAAGATCTGGAATGTTTAGAAGAAGGAGAATTTCTTAACGATGT
GATCATTGACTTTTACCTTAAGTATCTTCTTTTGGAGAAGGCATCAGATGAACTTGTTGAGCGA
AGCCACATTTTTAGTAGCTTTTTCTATAAATGCTTGACAAGAAAGGAAAATAACTTAACAGAAG
ATAATCCAGATCTTTCAGTGGCTCAGAGGAGACACAGAAGAGTGAGAACATGGACTCGTCACAT
AAATATTTTTAATAAAGACTACATCTTTGTACCTGTAAATGAATCGTCTCACTGGTATCTTGCA
GTCATTTGTTTCCCATGGCTAGAAGAAGCTGTGTATGAAGATTTTCCACAAACTGTGTCCCAAG
AGTTCCAGGACCAGCAGTCTCAACATGACAACAAAACGATAGATAATGATCCACACACCACTTC
AACTGTGTTCACGAGTGCAGAGGAGTCCCAAAGTACCGAGACGAGTATGTCAGTACCAAAGAAA
ATGTGTAAGCGGCCATGTATTCTCATACTAGACTCCCTGAAAGCTGCTTCCATACAAAACACAG
TTCAGAACTTGCGAGAGTATTTGGAGGTAGAGTGGGAAGTTAAACGAAAAACACACCGTGAATT
CAGTAAAACAAACATGGTCGACCTATGCCCCAAAGTCCCTAAGCAGGACAACAGCAGCGACTGT
GGGGTGTATTTGCTGCAGTATGTGGAGAGCTTCTTCCAGGATCCCATTGTTAACTTTGAACTTC
CAATTCACTTGGAGAAATGGTTTCCTCGCCATGTAATAAAGACCAAACGAGAAGATATTCGAGA
GCTCATTTTGAAACTTCACTTACAGCAACAGAAGGGCAGCAGCAGCTAGTTAATCTGTGCACAC
ATGGCACATGTTCCCTAAGCTTCCTGGAAAGCCGCTTACCAGCATCTGTGTCAGCTTACAGAGA
AGAAAGTAACTCACAGTACATCATAATTGTTACAATGTATATGGTATCTTGTTTGAGTCGTTGG
GCTCTCACAGCTGAAGGTGATGGAAAAGCACTTATAAAATAGAAGATAAAATTTCAAAAATATG
ATATTTTTATGACTAAATATGCTTGGATTATGCAATAGCATATGTAATGTGGGAATGTTTTCCT
AAGTAATAAACTATGTGATCTGTACTTCCACATGACTGGGTGTTGATGGGAGGTAGGCTCTCCC
TGGTGCCGGCCCAGTGCTTGTCAGGTTTGCTGACAAGTCACATCATATTGTAATTCTATTCTTT
GCAGCTCAAGCATGCAGTATGAATACTGTGTATTTTTTTAAAAAAGAACTTAGTATCAAGGCTT
CAGAAAATGCCATTCACGGCATCTCTTCTGTATAATGTGGAAAAAAATATCATTAAAAATTTAC
CCTTTCAAAGTGCAGCTTATTATTCTCAATTGTAAATGCAACTACTTTACTCTAATTTCCTCCT
CCACCTATTTCGATGTCATATATAGGGATCTGAGAAATGACTTCATCTGTTCAATAAAATGTGA
AACAAATTTTAATACCAAATAAGTTTTAACATACTATGTAGCTAAGCTTTGTTTATTTGAGGTA
TAGCTATATAAATATTCATTCCTACATTACCCCAGAATGTGTGTATACAGTTTCTATAAAAGAT
AAAATTGGTATCCTCATAATTTTAACAAAGAGAATACCTTAAACTCCTATTTATTATTTAGAAC
CAAATATGTAATTTTATAGTTTGGTTTACCCACTACTCATCTGCAAAGGCCAGATTTTTCATTT
CTTTTATATTTTTAAGTTATGGTTTTTAAAGCTGTATGATCCTCCATGGATCTCACATATACAG
CACTTAATATTTTATTAAATGTTCAGGTAACAATTCTACTGAATTTATGTAATGATGATGGTAT
TATCTAGCAAACATTTTAGAATCTTATACTATCAAATATTTTGAGGGAGACATAGTCGTACTGT
TTTCTGAAATAATGGATTTTAGAATATTATTTTAAACATCTCTTGGATTTACAATTATAACTGT
GTATAAAGCATTTGAAGTGAAGGTAATTTAAGGTAAAACTAAGAAGTCTGAAAGTTTTATTTCC
AATCAAGTGACTTGGGTCTGTCAGTCAGCCTCCCCGTCCTCGGCTTCTGTAGATCTTGTCTCTC
TTTGCATTGTTCGAGGTACGTGGCTTTTGGAGATCTCACATGAAAATGGTTATTAATTGTATAT
TTCATTCCCAATTTGTGTGTGTTGGGGAGAATTTTTTAAAAAGTGGCTGTCAATTGTGTTGTAT
ATCTCATTTTGGAAAGCAAGTGTGTAAGACATCTGATAATTTCAGAACTTTTCTGTTTGTGTGT
TTTTCAAAGATACCATGTTCCTTCATCATGTTTTGGAGACTGTTTAAAATTTGTCTTCCTAAAT
TCATGTAGAAATGATTTGAGGATATCAACATTTTGTATTAAACATGTTTTCAATTCATTGTAAT
TTTTTCTTAAAT

hide sequence

RefSeq Acc Id:

XM_006248244 ⟹ XP_006248306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	57,892,822 - 58,053,213 (-)	NCBI
mRatBN7.2	11	44,423,748 - 44,584,129 (-)	NCBI
Rnor_6.0	11	46,880,941 - 47,047,052 (-)	NCBI
Rnor_5.0	11	50,062,235 - 50,210,519 (-)	NCBI

Sequence:

show sequence

CGCCTCTCCCGGCACTGCCTCTGACGTTTAGCTCGGCGGGCAGTTTGTTTCCCCACCTCCGCCG
CTCCTCTCGCTGACTGGCTGCCGCCCGAGGGGTCCTGAGGTGACAGCGCCTGGAAGTGGGACTG
GAGGAGCTGGCGGTGGAGAAGATGGATAGGGCCAGGCCTGGGCGTCGGCGAGCTTCGTCAGAGA
TTGTTACAGAGGGAAAAAGGAAAAAGTCATCACCTGCTGATTTACAGAAGATAACGAAGTTGTT
AACTGTAAAGTCAGAGGATGTTCTTGCTCAGTCACCACTGCCCAAGCTCAGAGGCTCAGAATGC
TGGGACTTCCCTTTGGAGGGGTGGACAAGAAGCCTAAGAAATAAAGTCATCTGTCTAGACCACA
AAACCACAAAAGCTGCCCATGGGTGTCCTCCTAAAGCATTACCAAAAAGGCATCTCAAAGTTAT
GTTGACGAATGTTCTATGGACGGACTTAGGACGAGAATTCAGAAAGACCCTGCCTAGAAATGAT
GCTAAGTTATGTGATACCAGCAAGGTGCAATCAGACTCATTGCCTTCGACATCTGTTGACAGCA
TAGAGACATGTCAAAGATTAGATCCTCTTCACCAAAGCCTTAATTTATCTGAAAGGATACCCAG
AGTTATATTGACGGATATTCGGCAGACAGAATTAGGAAGAAAATACTTAAAGATTCCATCTGTA
ACTGAGGCCAGTTTGAGTGATACAGCCAGCCCGAAGTCAGAGGAACTTTCTTCGTCAGCCGATG
GCAGCTTAGAGTCTTGTCAGAATGTAAATCATCTCAAGAGCTTTTTATCTGAAAGGGGCTCAAA
ACCAAGTAGGACAGGTGACATTTCTGCAAAGGAGGCTGCAAATGGGAGACAGGAGCAGGGGGAT
GATGGAGACATCGCACCTGAGATGGTTACCCCTCAGTCTAAAGACTTTAATAGTGGAAATAAAG
GTGATTATCATGAAGAGGGGACCAGCAACAAGAACACTTCATATTCTCATTCAGAAACGGACCA
TACTCCAGTTTCCAGGAAGAGAAAGAAAAGGGGAAGAAGTAATTTTCATAATTCTCATAATCCT
AAGTCTTCTGTGGATAAGTCAACAGAATATATAAAAGAAGAAGAAAATGAGTCTACAGTCTCCA
GTAAGCTTGAAGAGTCCAATGAAGACTCTCACCAGGACCCAGCACCACCCGAAGGACTCACTCC
GGACTCTTTGGAGACCGAGGCCACTAACGTGTGCTCATTCGTGGTTCAGGAGCCAGATGTTAGT
GCTGCCTCTGGAAGGGCCTGCTCACCCAACAAAAGCTCGGAGAGCTCTGTTTCTAGTGAAGTGG
CAGAGAATTCTTCGGCGGCTGAGAAGGGTGAGGCATCGACTGTAAAGGAAGCACCTCCTCCAGG
AGGAAACAGTGAAGAGAACCAGTTGTTGATGTCAGCTGAGCCAATTGTTGTTTCCAGTGACGAA
GAAGGACCGGTTGAACATAAGAATTCAGTAATTCTAAAATTACAGCCTTCTCAAGATTATGAAT
TTATGAGTGAAAATCAGACTACTTCTGATCCACAGTTGTCAGAATTAATGCTGGGTGCATGTGA
ATCTGTACAGGTATCATCTGAATTATGTCCGTACAATCCTGACATGGAAAACATTTCTTGTATT
AACCCTAATAGTGAAATGGATCTGAAATTGGATTTCATATTTACTTGTGTGTATATTGGTAAAA
TAAAAGGAACTTCAAAAGGTTGTATCACGTTCACAAAGAAGTATATTAAAATCCCATTTCAAGT
GTCTATGAATGAGATTTCACTGACTGTGGACACGGCACGTTTAAAGAGGTTCGGGTTATGGGAA
AGCAAGGATGATGACCACAGTAAGAGGAGCCATGCTATCCTTTTCCTCTGGGTTTCCTCAAACT
ACCTTCAAGACATTCAGACCCAGTTAGAAAACCCTATGCTAAGCCAGCAATCAAAAGCCAATGA
ATTCATTTTCCTTGAGTTAAATAGTCCCATTTCACAAAGAGAAGAATTGAAATTGAAAGATATT
ATGATGGAAATCGGTGCGACAAATGGAGAATTACAGCTCTCCTGTCCGTTGCCCTGGGTTCAGG
CATTTCCTTTGTTTCAGGATCTCTCTCCACAAGAAATCTCTTTTCTTCACTATTACTGTGCTTC
AGCTTCCTCTTTCCCTGCTGTTGCTGGAGCAGACATGAAGAAGAAGCCAGTGTCTCAGCCCTCA
AATGCAGATGTCGTCAAGCCTACTTACACCTTTCTACATAAACAAAGCAGTGGCTGCTACTCAC
TGTCTATTACTTCAAGTCCAGATGAAGAATGGCGAGAAGTCAGGAACACTGGACCCGTTCAGAA
GTTGATTGTGTATCCTCCACCACCTACTAAGGGAGGCTTGGGAGTAACTAATGAAGATCTGGAA
TGTTTAGAAGAAGGAGAATTTCTTAACGATGTGATCATTGACTTTTACCTTAAGTATCTTCTTT
TGGAGAAGGCATCAGATGAACTTGTTGAGCGAAGCCACATTTTTAGTAGCTTTTTCTATAAATG
CTTGACAAGAAAGGAAAATAACTTAACAGAAGATAATCCAGATCTTTCAGTGGCTCAGAGGAGA
CACAGAAGAGTGAGAACATGGACTCGTCACATAAATATTTTTAATAAAGACTACATCTTTGTAC
CTGTAAATGAATCGTCTCACTGGTATCTTGCAGTCATTTGTTTCCCATGGCTAGAAGAAGCTGT
GTATGAAGATTTTCCACAAACTGTGTCCCAAGAGTTCCAGGACCAGCAGTCTCAACATGACAAC
AAAACGATAGATAATGATCCACACACCACTTCAACTGTGTTCACGAGTGCAGAGGAGTCCCAAA
GTACCGAGACGAGTATGTCAGTACCAAAGAAAATGTGTAAGCGGCCATGTATTCTCATACTAGA
CTCCCTGAAAGCTGCTTCCATACAAAACACAGTTCAGAACTTGCGAGAGTATTTGGAGGTAGAG
TGGGAAGTTAAACGAAAAACACACCGTGAATTCAGTAAAACAAACATGGTCGACCTATGCCCCA
AAGTCCCTAAGCAGGACAACAGCAGCGACTGTGGGGTGTATTTGCTGCAGTATGTGGAGAGCTT
CTTCCAGGATCCCATTGTTAACTTTGAACTTCCAATTCACTTGGAGAAATGGTTTCCTCGCCAT
GTAATAAAGACCAAACGAGAAGATATTCGAGAGCTCATTTTGAAACTTCACTTACAGCAACAGA
AGGGCAGCAGCAGCTAGTTAATCTGTGCACACATGGCACATGTTCCCTAAGCTTCCTGGAAAGC
CGCTTACCAGCATCTGTGTCAGCTTACAGAGAAGAAAGTAACTCACAGTACATCATAATTGTTA
CAATGTATATGGTATCTTGTTTGAGTCGTTGGGCTCTCACAGCTGAAGGTGATGGAAAAGCACT
TATAAAATAGAAGATAAAATTTCAAAAATATGATATTTTTATGACTAAATATGCTTGGATTATG
CAATAGCATATGTAATGTGGGAATGTTTTCCTAAGTAATAAACTATGTGATCTGTACTTCCACA
TGACTGGGTGTTGATGGGAGGTAGGCTCTCCCTGGTGCCGGCCCAGTGCTTGTCAGGTTTGCTG
ACAAGTCACATCATATTGTAATTCTATTCTTTGCAGCTCAAGCATGCAGTATGAATACTGTGTA
TTTTTTTAAAAAAGAACTTAGTATCAAGGCTTCAGAAAATGCCATTCACGGCATCTCTTCTGTA
TAATGTGGAAAAAAATATCATTAAAAATTTACCCTTTCAAAGTGCAGCTTATTATTCTCAATTG
TAAATGCAACTACTTTACTCTAATTTCCTCCTCCACCTATTTCGATGTCATATATAGGGATCTG
AGAAATGACTTCATCTGTTCAATAAAATGTGAAACAAATTTTAATACCAAATAAGTTTTAACAT
ACTATGTAGCTAAGCTTTGTTTATTTGAGGTATAGCTATATAAATATTCATTCCTACATTACCC
CAGAATGTGTGTATACAGTTTCTATAAAAGATAAAATTGGTATCCTCATAATTTTAACAAAGAG
AATACCTTAAACTCCTATTTATTATTTAGAACCAAATATGTAATTTTATAGTTTGGTTTACCCA
CTACTCATCTGCAAAGGCCAGATTTTTCATTTCTTTTATATTTTTAAGTTATGGTTTTTAAAGC
TGTATGATCCTCCATGGATCTCACATATACAGCACTTAATATTTTATTAAATGTTCAGGTAACA
ATTCTACTGAATTTATGTAATGATGATGGTATTATCTAGCAAACATTTTAGAATCTTATACTAT
CAAATATTTTGAGGGAGACATAGTCGTACTGTTTTCTGAAATAATGGATTTTAGAATATTATTT
TAAACATCTCTTGGATTTACAATTATAACTGTGTATAAAGCATTTGAAGTGAAGGTAATTTAAG
GTAAAACTAAGAAGTCTGAAAGTTTTATTTCCAATCAAGTGACTTGGGTCTGTCAGTCAGCCTC
CCCGTCCTCGGCTTCTGTAGATCTTGTCTCTCTTTGCATTGTTCGAGGTACGTGGCTTTTGGAG
ATCTCACATGAAAATGGTTATTAATTGTATATTTCATTCCCAATTTGTGTGTGTTGGGGAGAAT
TTTTTAAAAAGTGGCTGTCAATTGTGTTGTATATCTCATTTTGGAAAGCAAGTGTGTAAGACAT
CTGATAATTTCAGAACTTTTCTGTTTGTGTGTTTTTCAAAGATACCATGTTCCTTCATCATGTT
TTGGAGACTGTTTAAAATTTGTCTTCCTAAATTCATGTAGAAATGATTTGAGGATATCAACATT
TTGTATTAAACATGTTTTCAATTCATTGTAA

hide sequence

RefSeq Acc Id:

XM_006248247 ⟹ XP_006248309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	57,892,822 - 58,036,482 (-)	NCBI
mRatBN7.2	11	44,423,748 - 44,564,723 (-)	NCBI
Rnor_6.0	11	46,880,941 - 47,027,683 (-)	NCBI
Rnor_5.0	11	50,062,235 - 50,210,519 (-)	NCBI

Sequence:

show sequence

GACTTCCGGTCGGAGGGAGGCGACTACTAGTGCGCAAGCGCGAATCCCACTTCTGGCTTTCTCT
CTTCCCCTCCCCCTCCCTTCCCCAGCCCGAGGGGTCCTGAGGTGACAGCGCCTGGAAGTGGGAC
TGGAGGAGCTGGCGGTGGAGAAGATGGATAGGGCCAGGCCTGGGCGTCGGCGAGCTTCGTCAGA
GATTGTTACAGAGGGAAAAAGGAAAAAGTCATCACCTGCTGATTTACAGAAGATAACGAAGTTG
TTAACTGTAAAGTCAGAGGATGTTCTTGCTCAGTCACCACTGCCCAAGCTCAGAGGCTCAGAAT
GCTGGGACTTCCCTTTGGAGGGGTGGACAAGAAGCCTAAGAAATAAAGTCATCTGTCTAGACCA
CAAAACCACAAAAGCTGCCCATGGGTGTCCTCCTAAAGCATTACCAAAAAGGATACCCAGAGTT
ATATTGACGGATATTCGGCAGACAGAATTAGGAAGAAAATACTTAAAGATTCCATCTGTAACTG
AGGCCAGTTTGAGTGATACAGCCAGCCCGAAGTCAGAGGAACTTTCTTCGTCAGCCGATGGCAG
CTTAGAGTCTTGTCAGAATGTAAATCATCTCAAGAGCTTTTTATCTGAAAGGGGCTCAAAACCA
AGTAGGACAGGTGACATTTCTGCAAAGGAGGCTGCAAATGGGAGACAGGAGCAGGGGGATGATG
GAGACATCGCACCTGAGATGGTTACCCCTCAGTCTAAAGACTTTAATAGTGGAAATAAAGGTGA
TTATCATGAAGAGGGGACCAGCAACAAGAACACTTCATATTCTCATTCAGAAACGGACCATACT
CCAGTTTCCAGGAAGAGAAAGAAAAGGGGAAGAAGTAATTTTCATAATTCTCATAATCCTAAGT
CTTCTGTGGATAAGTCAACAGAATATATAAAAGAAGAAGAAAATGAGTCTACAGTCTCCAGTAA
GCTTGAAGAGTCCAATGAAGACTCTCACCAGGACCCAGCACCACCCGAAGGACTCACTCCGGAC
TCTTTGGAGACCGAGGCCACTAACGTGTGCTCATTCGTGGTTCAGGAGCCAGATGTTAGTGCTG
CCTCTGGAAGGGCCTGCTCACCCAACAAAAGCTCGGAGAGCTCTGTTTCTAGTGAAGTGGCAGA
GAATTCTTCGGCGGCTGAGAAGGGTGAGGCATCGACTGTAAAGGAAGCACCTCCTCCAGGAGGA
AACAGTGAAGAGAACCAGTTGTTGATGTCAGCTGAGCCAATTGTTGTTTCCAGTGACGAAGAAG
GACCGGTTGAACATAAGAATTCAGTAATTCTAAAATTACAGCCTTCTCAAGATTATGAATTTAT
GAGTGAAAATCAGACTACTTCTGATCCACAGTTGTCAGAATTAATGCTGGGTGCATGTGAATCT
GTACAGGTATCATCTGAATTATGTCCGTACAATCCTGACATGGAAAACATTTCTTGTATTAACC
CTAATAGTGAAATGGATCTGAAATTGGATTTCATATTTACTTGTGTGTATATTGGTAAAATAAA
AGGAACTTCAAAAGGTTGTATCACGTTCACAAAGAAGTATATTAAAATCCCATTTCAAGTGTCT
ATGAATGAGATTTCACTGACTGTGGACACGGCACGTTTAAAGAGGTTCGGGTTATGGGAAAGCA
AGGATGATGACCACAGTAAGAGGAGCCATGCTATCCTTTTCCTCTGGGTTTCCTCAAACTACCT
TCAAGACATTCAGACCCAGTTAGAAAACCCTATGCTAAGCCAGCAATCAAAAGCCAATGAATTC
ATTTTCCTTGAGTTAAATAGTCCCATTTCACAAAGAGAAGAATTGAAATTGAAAGATATTATGA
TGGAAATCGGTGCGACAAATGGAGAATTACAGCTCTCCTGTCCGTTGCCCTGGGTTCAGGCATT
TCCTTTGTTTCAGGATCTCTCTCCACAAGAAATCTCTTTTCTTCACTATTACTGTGCTTCAGCT
TCCTCTTTCCCTGCTGTTGCTGGAGCAGACATGAAGAAGAAGCCAGTGTCTCAGCCCTCAAATG
CAGATGTCGTCAAGCCTACTTACACCTTTCTACATAAACAAAGCAGTGGCTGCTACTCACTGTC
TATTACTTCAAGTCCAGATGAAGAATGGCGAGAAGTCAGGAACACTGGACCCGTTCAGAAGTTG
ATTGTGTATCCTCCACCACCTACTAAGGGAGGCTTGGGAGTAACTAATGAAGATCTGGAATGTT
TAGAAGAAGGAGAATTTCTTAACGATGTGATCATTGACTTTTACCTTAAGTATCTTCTTTTGGA
GAAGGCATCAGATGAACTTGTTGAGCGAAGCCACATTTTTAGTAGCTTTTTCTATAAATGCTTG
ACAAGAAAGGAAAATAACTTAACAGAAGATAATCCAGATCTTTCAGTGGCTCAGAGGAGACACA
GAAGAGTGAGAACATGGACTCGTCACATAAATATTTTTAATAAAGACTACATCTTTGTACCTGT
AAATGAATCGTCTCACTGGTATCTTGCAGTCATTTGTTTCCCATGGCTAGAAGAAGCTGTGTAT
GAAGATTTTCCACAAACTGTGTCCCAAGAGTTCCAGGACCAGCAGTCTCAACATGACAACAAAA
CGATAGATAATGATCCACACACCACTTCAACTGTGTTCACGAGTGCAGAGGAGTCCCAAAGTAC
CGAGACGAGTATGTCAGTACCAAAGAAAATGTGTAAGCGGCCATGTATTCTCATACTAGACTCC
CTGAAAGCTGCTTCCATACAAAACACAGTTCAGAACTTGCGAGAGTATTTGGAGGTAGAGTGGG
AAGTTAAACGAAAAACACACCGTGAATTCAGTAAAACAAACATGGTCGACCTATGCCCCAAAGT
CCCTAAGCAGGACAACAGCAGCGACTGTGGGGTGTATTTGCTGCAGTATGTGGAGAGCTTCTTC
CAGGATCCCATTGTTAACTTTGAACTTCCAATTCACTTGGAGAAATGGTTTCCTCGCCATGTAA
TAAAGACCAAACGAGAAGATATTCGAGAGCTCATTTTGAAACTTCACTTACAGCAACAGAAGGG
CAGCAGCAGCTAGTTAATCTGTGCACACATGGCACATGTTCCCTAAGCTTCCTGGAAAGCCGCT
TACCAGCATCTGTGTCAGCTTACAGAGAAGAAAGTAACTCACAGTACATCATAATTGTTACAAT
GTATATGGTATCTTGTTTGAGTCGTTGGGCTCTCACAGCTGAAGGTGATGGAAAAGCACTTATA
AAATAGAAGATAAAATTTCAAAAATATGATATTTTTATGACTAAATATGCTTGGATTATGCAAT
AGCATATGTAATGTGGGAATGTTTTCCTAAGTAATAAACTATGTGATCTGTACTTCCACATGAC
TGGGTGTTGATGGGAGGTAGGCTCTCCCTGGTGCCGGCCCAGTGCTTGTCAGGTTTGCTGACAA
GTCACATCATATTGTAATTCTATTCTTTGCAGCTCAAGCATGCAGTATGAATACTGTGTATTTT
TTTAAAAAAGAACTTAGTATCAAGGCTTCAGAAAATGCCATTCACGGCATCTCTTCTGTATAAT
GTGGAAAAAAATATCATTAAAAATTTACCCTTTCAAAGTGCAGCTTATTATTCTCAATTGTAAA
TGCAACTACTTTACTCTAATTTCCTCCTCCACCTATTTCGATGTCATATATAGGGATCTGAGAA
ATGACTTCATCTGTTCAATAAAATGTGAAACAAATTTTAATACCAAATAAGTTTTAACATACTA
TGTAGCTAAGCTTTGTTTATTTGAGGTATAGCTATATAAATATTCATTCCTACATTACCCCAGA
ATGTGTGTATACAGTTTCTATAAAAGATAAAATTGGTATCCTCATAATTTTAACAAAGAGAATA
CCTTAAACTCCTATTTATTATTTAGAACCAAATATGTAATTTTATAGTTTGGTTTACCCACTAC
TCATCTGCAAAGGCCAGATTTTTCATTTCTTTTATATTTTTAAGTTATGGTTTTTAAAGCTGTA
TGATCCTCCATGGATCTCACATATACAGCACTTAATATTTTATTAAATGTTCAGGTAACAATTC
TACTGAATTTATGTAATGATGATGGTATTATCTAGCAAACATTTTAGAATCTTATACTATCAAA
TATTTTGAGGGAGACATAGTCGTACTGTTTTCTGAAATAATGGATTTTAGAATATTATTTTAAA
CATCTCTTGGATTTACAATTATAACTGTGTATAAAGCATTTGAAGTGAAGGTAATTTAAGGTAA
AACTAAGAAGTCTGAAAGTTTTATTTCCAATCAAGTGACTTGGGTCTGTCAGTCAGCCTCCCCG
TCCTCGGCTTCTGTAGATCTTGTCTCTCTTTGCATTGTTCGAGGTACGTGGCTTTTGGAGATCT
CACATGAAAATGGTTATTAATTGTATATTTCATTCCCAATTTGTGTGTGTTGGGGAGAATTTTT
TAAAAAGTGGCTGTCAATTGTGTTGTATATCTCATTTTGGAAAGCAAGTGTGTAAGACATCTGA
TAATTTCAGAACTTTTCTGTTTGTGTGTTTTTCAAAGATACCATGTTCCTTCATCATGTTTTGG
AGACTGTTTAAAATTTGTCTTCCTAAATTCATGTAGAAATGATTTGAGGATATCAACATTTTGT
ATTAAACATGTTTTCAATTCATTGTAA

hide sequence

RefSeq Acc Id:

XM_006248248 ⟹ XP_006248310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	57,892,822 - 58,036,483 (-)	NCBI
mRatBN7.2	11	44,423,748 - 44,564,723 (-)	NCBI
Rnor_6.0	11	46,880,941 - 47,027,683 (-)	NCBI
Rnor_5.0	11	50,062,235 - 50,210,519 (-)	NCBI

Sequence:

show sequence

GACTTCCGGTCGGAGGGAGGCGACTACTAGTGCGCAAGCGCGAATCCCACTTCTGGCTTTCTCT
CTTCCCCTCCCCCTCCCTTCCCCAGCCCGAGGGGTCCTGAGGTGACAGCGCCTGGAAGTGGGAC
TGGAGGAGCTGGCGGTGGAGAAGATGGATAGGGCCAGGCCTGGGCGTCGGCGAGCTTCGTCAGA
GATTGTTACAGAGGGAAAAAGGAAAAAGTCATCACCTGCTGATTTACAGAAGATAACGAAGTTG
TTAACTGTAAAGTCAGAGGATGTTCTTGCTCAGTCACCACTGCCCAAGCTCAGAGGCTCAGAAT
GCTGGGACTTCCCTTTGGAGGGGTGGACAAGAAGCCTAAGAAATAAAGTCATCTGTCTAGACCA
CAAAACCACAAAAGCTGCCCATGGGTGTCCTCCTAAAGCATTACCAAAAAGGGGCTCAAAACCA
AGTAGGACAGGTGACATTTCTGCAAAGGAGGCTGCAAATGGGAGACAGGAGCAGGGGGATGATG
GAGACATCGCACCTGAGATGGTTACCCCTCAGTCTAAAGACTTTAATAGTGGAAATAAAGGTGA
TTATCATGAAGAGGGGACCAGCAACAAGAACACTTCATATTCTCATTCAGAAACGGACCATACT
CCAGTTTCCAGGAAGAGAAAGAAAAGGGGAAGAAGTAATTTTCATAATTCTCATAATCCTAAGT
CTTCTGTGGATAAGTCAACAGAATATATAAAAGAAGAAGAAAATGAGTCTACAGTCTCCAGTAA
GCTTGAAGAGTCCAATGAAGACTCTCACCAGGACCCAGCACCACCCGAAGGACTCACTCCGGAC
TCTTTGGAGACCGAGGCCACTAACGTGTGCTCATTCGTGGTTCAGGAGCCAGATGTTAGTGCTG
CCTCTGGAAGGGCCTGCTCACCCAACAAAAGCTCGGAGAGCTCTGTTTCTAGTGAAGTGGCAGA
GAATTCTTCGGCGGCTGAGAAGGGTGAGGCATCGACTGTAAAGGAAGCACCTCCTCCAGGAGGA
AACAGTGAAGAGAACCAGTTGTTGATGTCAGCTGAGCCAATTGTTGTTTCCAGTGACGAAGAAG
GACCGGTTGAACATAAGAATTCAGTAATTCTAAAATTACAGCCTTCTCAAGATTATGAATTTAT
GAGTGAAAATCAGACTACTTCTGATCCACAGTTGTCAGAATTAATGCTGGGTGCATGTGAATCT
GTACAGGTATCATCTGAATTATGTCCGTACAATCCTGACATGGAAAACATTTCTTGTATTAACC
CTAATAGTGAAATGGATCTGAAATTGGATTTCATATTTACTTGTGTGTATATTGGTAAAATAAA
AGGAACTTCAAAAGGTTGTATCACGTTCACAAAGAAGTATATTAAAATCCCATTTCAAGTGTCT
ATGAATGAGATTTCACTGACTGTGGACACGGCACGTTTAAAGAGGTTCGGGTTATGGGAAAGCA
AGGATGATGACCACAGTAAGAGGAGCCATGCTATCCTTTTCCTCTGGGTTTCCTCAAACTACCT
TCAAGACATTCAGACCCAGTTAGAAAACCCTATGCTAAGCCAGCAATCAAAAGCCAATGAATTC
ATTTTCCTTGAGTTAAATAGTCCCATTTCACAAAGAGAAGAATTGAAATTGAAAGATATTATGA
TGGAAATCGGTGCGACAAATGGAGAATTACAGCTCTCCTGTCCGTTGCCCTGGGTTCAGGCATT
TCCTTTGTTTCAGGATCTCTCTCCACAAGAAATCTCTTTTCTTCACTATTACTGTGCTTCAGCT
TCCTCTTTCCCTGCTGTTGCTGGAGCAGACATGAAGAAGAAGCCAGTGTCTCAGCCCTCAAATG
CAGATGTCGTCAAGCCTACTTACACCTTTCTACATAAACAAAGCAGTGGCTGCTACTCACTGTC
TATTACTTCAAGTCCAGATGAAGAATGGCGAGAAGTCAGGAACACTGGACCCGTTCAGAAGTTG
ATTGTGTATCCTCCACCACCTACTAAGGGAGGCTTGGGAGTAACTAATGAAGATCTGGAATGTT
TAGAAGAAGGAGAATTTCTTAACGATGTGATCATTGACTTTTACCTTAAGTATCTTCTTTTGGA
GAAGGCATCAGATGAACTTGTTGAGCGAAGCCACATTTTTAGTAGCTTTTTCTATAAATGCTTG
ACAAGAAAGGAAAATAACTTAACAGAAGATAATCCAGATCTTTCAGTGGCTCAGAGGAGACACA
GAAGAGTGAGAACATGGACTCGTCACATAAATATTTTTAATAAAGACTACATCTTTGTACCTGT
AAATGAATCGTCTCACTGGTATCTTGCAGTCATTTGTTTCCCATGGCTAGAAGAAGCTGTGTAT
GAAGATTTTCCACAAACTGTGTCCCAAGAGTTCCAGGACCAGCAGTCTCAACATGACAACAAAA
CGATAGATAATGATCCACACACCACTTCAACTGTGTTCACGAGTGCAGAGGAGTCCCAAAGTAC
CGAGACGAGTATGTCAGTACCAAAGAAAATGTGTAAGCGGCCATGTATTCTCATACTAGACTCC
CTGAAAGCTGCTTCCATACAAAACACAGTTCAGAACTTGCGAGAGTATTTGGAGGTAGAGTGGG
AAGTTAAACGAAAAACACACCGTGAATTCAGTAAAACAAACATGGTCGACCTATGCCCCAAAGT
CCCTAAGCAGGACAACAGCAGCGACTGTGGGGTGTATTTGCTGCAGTATGTGGAGAGCTTCTTC
CAGGATCCCATTGTTAACTTTGAACTTCCAATTCACTTGGAGAAATGGTTTCCTCGCCATGTAA
TAAAGACCAAACGAGAAGATATTCGAGAGCTCATTTTGAAACTTCACTTACAGCAACAGAAGGG
CAGCAGCAGCTAGTTAATCTGTGCACACATGGCACATGTTCCCTAAGCTTCCTGGAAAGCCGCT
TACCAGCATCTGTGTCAGCTTACAGAGAAGAAAGTAACTCACAGTACATCATAATTGTTACAAT
GTATATGGTATCTTGTTTGAGTCGTTGGGCTCTCACAGCTGAAGGTGATGGAAAAGCACTTATA
AAATAGAAGATAAAATTTCAAAAATATGATATTTTTATGACTAAATATGCTTGGATTATGCAAT
AGCATATGTAATGTGGGAATGTTTTCCTAAGTAATAAACTATGTGATCTGTACTTCCACATGAC
TGGGTGTTGATGGGAGGTAGGCTCTCCCTGGTGCCGGCCCAGTGCTTGTCAGGTTTGCTGACAA
GTCACATCATATTGTAATTCTATTCTTTGCAGCTCAAGCATGCAGTATGAATACTGTGTATTTT
TTTAAAAAAGAACTTAGTATCAAGGCTTCAGAAAATGCCATTCACGGCATCTCTTCTGTATAAT
GTGGAAAAAAATATCATTAAAAATTTACCCTTTCAAAGTGCAGCTTATTATTCTCAATTGTAAA
TGCAACTACTTTACTCTAATTTCCTCCTCCACCTATTTCGATGTCATATATAGGGATCTGAGAA
ATGACTTCATCTGTTCAATAAAATGTGAAACAAATTTTAATACCAAATAAGTTTTAACATACTA
TGTAGCTAAGCTTTGTTTATTTGAGGTATAGCTATATAAATATTCATTCCTACATTACCCCAGA
ATGTGTGTATACAGTTTCTATAAAAGATAAAATTGGTATCCTCATAATTTTAACAAAGAGAATA
CCTTAAACTCCTATTTATTATTTAGAACCAAATATGTAATTTTATAGTTTGGTTTACCCACTAC
TCATCTGCAAAGGCCAGATTTTTCATTTCTTTTATATTTTTAAGTTATGGTTTTTAAAGCTGTA
TGATCCTCCATGGATCTCACATATACAGCACTTAATATTTTATTAAATGTTCAGGTAACAATTC
TACTGAATTTATGTAATGATGATGGTATTATCTAGCAAACATTTTAGAATCTTATACTATCAAA
TATTTTGAGGGAGACATAGTCGTACTGTTTTCTGAAATAATGGATTTTAGAATATTATTTTAAA
CATCTCTTGGATTTACAATTATAACTGTGTATAAAGCATTTGAAGTGAAGGTAATTTAAGGTAA
AACTAAGAAGTCTGAAAGTTTTATTTCCAATCAAGTGACTTGGGTCTGTCAGTCAGCCTCCCCG
TCCTCGGCTTCTGTAGATCTTGTCTCTCTTTGCATTGTTCGAGGTACGTGGCTTTTGGAGATCT
CACATGAAAATGGTTATTAATTGTATATTTCATTCCCAATTTGTGTGTGTTGGGGAGAATTTTT
TAAAAAGTGGCTGTCAATTGTGTTGTATATCTCATTTTGGAAAGCAAGTGTGTAAGACATCTGA
TAATTTCAGAACTTTTCTGTTTGTGTGTTTTTCAAAGATACCATGTTCCTTCATCATGTTTTGG
AGACTGTTTAAAATTTGTCTTCCTAAATTCATGTAGAAATGATTTGAGGATATCAACATTTTGT
ATTAAACATGTTTTCAATTCATTGTAA

hide sequence

RefSeq Acc Id:

XM_017597931 ⟹ XP_017453420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	57,892,822 - 58,036,483 (-)	NCBI
mRatBN7.2	11	44,423,748 - 44,564,723 (-)	NCBI
Rnor_6.0	11	46,880,941 - 47,027,683 (-)	NCBI

Sequence:

show sequence

GACTTCCGGTCGGAGGGAGGCGACTACTAGTGCGCAAGCGCGAATCCCACTTCTGGCTTTCTCT
CTTCCCCTCCCCCTCCCTTCCCCAGCCCGAGGGGTCCTGAGGTGACAGCGCCTGGAAGTGGGAC
TGGAGGAGCTGGCGGTGGAGAAGATGGATAGGGCCAGGCCTGGGCGTCGGCGAGCTTCGTCAGA
GATTGTTACAGAGGGAAAAAGGAAAAAGTCATCACCTGCTGATTTACAGAAGATAACGAAGTTG
TTAACTGTAAAGTCAGAGGATGTTCTTGCTCAGTCACCACTGCCCAAGCTCAGAGGCTCAGAAT
GCTGGGACTTCCCTTTGGAGGGGTGGACAAGAAGCCTAAGAAATAAAGTCATCTGTCTAGACCA
CAAAACCACAAAAGCTGCCCATGGGTGTCCTCCTAAAGCATTACCAAAAAGGCATCTCAAAGTT
ATGTTGACGAATGTTCTATGGACGGACTTAGGACGAGAATTCAGAAAGACCCTGCCTAGAAATG
ATGCTAAGTTATGTGATACCAGCAAGGTGCAATCAGACTCATTGCCTTCGACATCTGTTGACAG
CATAGAGACATGTCAAAGATTAGATCCTCTTCACCAAAGCCTTAATTTATCTGAAAGGGGCTCA
AAACCAAGTAGGACAGGTGACATTTCTGCAAAGGAGGCTGCAAATGGGAGACAGGAGCAGGGGG
ATGATGGAGACATCGCACCTGAGATGGTTACCCCTCAGTCTAAAGACTTTAATAGTGGAAATAA
AGGTGATTATCATGAAGAGGGGACCAGCAACAAGAACACTTCATATTCTCATTCAGAAACGGAC
CATACTCCAGTTTCCAGGAAGAGAAAGAAAAGGGGAAGAAGTAATTTTCATAATTCTCATAATC
CTAAGTCTTCTGTGGATAAGTCAACAGAATATATAAAAGAAGAAGAAAATGAGTCTACAGTCTC
CAGTAAGCTTGAAGAGTCCAATGAAGACTCTCACCAGGACCCAGCACCACCCGAAGGACTCACT
CCGGACTCTTTGGAGACCGAGGCCACTAACGTGTGCTCATTCGTGGTTCAGGAGCCAGATGTTA
GTGCTGCCTCTGGAAGGGCCTGCTCACCCAACAAAAGCTCGGAGAGCTCTGTTTCTAGTGAAGT
GGCAGAGAATTCTTCGGCGGCTGAGAAGGGTGAGGCATCGACTGTAAAGGAAGCACCTCCTCCA
GGAGGAAACAGTGAAGAGAACCAGTTGTTGATGTCAGCTGAGCCAATTGTTGTTTCCAGTGACG
AAGAAGGACCGGTTGAACATAAGAATTCAGTAATTCTAAAATTACAGCCTTCTCAAGATTATGA
ATTTATGAGTGAAAATCAGACTACTTCTGATCCACAGTTGTCAGAATTAATGCTGGGTGCATGT
GAATCTGTACAGGTATCATCTGAATTATGTCCGTACAATCCTGACATGGAAAACATTTCTTGTA
TTAACCCTAATAGTGAAATGGATCTGAAATTGGATTTCATATTTACTTGTGTGTATATTGGTAA
AATAAAAGGAACTTCAAAAGGTTGTATCACGTTCACAAAGAAGTATATTAAAATCCCATTTCAA
GTGTCTATGAATGAGATTTCACTGACTGTGGACACGGCACGTTTAAAGAGGTTCGGGTTATGGG
AAAGCAAGGATGATGACCACAGTAAGAGGAGCCATGCTATCCTTTTCCTCTGGGTTTCCTCAAA
CTACCTTCAAGACATTCAGACCCAGTTAGAAAACCCTATGCTAAGCCAGCAATCAAAAGCCAAT
GAATTCATTTTCCTTGAGTTAAATAGTCCCATTTCACAAAGAGAAGAATTGAAATTGAAAGATA
TTATGATGGAAATCGGTGCGACAAATGGAGAATTACAGCTCTCCTGTCCGTTGCCCTGGGTTCA
GGCATTTCCTTTGTTTCAGGATCTCTCTCCACAAGAAATCTCTTTTCTTCACTATTACTGTGCT
TCAGCTTCCTCTTTCCCTGCTGTTGCTGGAGCAGACATGAAGAAGAAGCCAGTGTCTCAGCCCT
CAAATGCAGATGTCGTCAAGCCTACTTACACCTTTCTACATAAACAAAGCAGTGGCTGCTACTC
ACTGTCTATTACTTCAAGTCCAGATGAAGAATGGCGAGAAGTCAGGAACACTGGACCCGTTCAG
AAGTTGATTGTGTATCCTCCACCACCTACTAAGGGAGGCTTGGGAGTAACTAATGAAGATCTGG
AATGTTTAGAAGAAGGAGAATTTCTTAACGATGTGATCATTGACTTTTACCTTAAGTATCTTCT
TTTGGAGAAGGCATCAGATGAACTTGTTGAGCGAAGCCACATTTTTAGTAGCTTTTTCTATAAA
TGCTTGACAAGAAAGGAAAATAACTTAACAGAAGATAATCCAGATCTTTCAGTGGCTCAGAGGA
GACACAGAAGAGTGAGAACATGGACTCGTCACATAAATATTTTTAATAAAGACTACATCTTTGT
ACCTGTAAATGAATCGTCTCACTGGTATCTTGCAGTCATTTGTTTCCCATGGCTAGAAGAAGCT
GTGTATGAAGATTTTCCACAAACTGTGTCCCAAGAGTTCCAGGACCAGCAGTCTCAACATGACA
ACAAAACGATAGATAATGATCCACACACCACTTCAACTGTGTTCACGAGTGCAGAGGAGTCCCA
AAGTACCGAGACGAGTATGTCAGTACCAAAGAAAATGTGTAAGCGGCCATGTATTCTCATACTA
GACTCCCTGAAAGCTGCTTCCATACAAAACACAGTTCAGAACTTGCGAGAGTATTTGGAGGTAG
AGTGGGAAGTTAAACGAAAAACACACCGTGAATTCAGTAAAACAAACATGGTCGACCTATGCCC
CAAAGTCCCTAAGCAGGACAACAGCAGCGACTGTGGGGTGTATTTGCTGCAGTATGTGGAGAGC
TTCTTCCAGGATCCCATTGTTAACTTTGAACTTCCAATTCACTTGGAGAAATGGTTTCCTCGCC
ATGTAATAAAGACCAAACGAGAAGATATTCGAGAGCTCATTTTGAAACTTCACTTACAGCAACA
GAAGGGCAGCAGCAGCTAGTTAATCTGTGCACACATGGCACATGTTCCCTAAGCTTCCTGGAAA
GCCGCTTACCAGCATCTGTGTCAGCTTACAGAGAAGAAAGTAACTCACAGTACATCATAATTGT
TACAATGTATATGGTATCTTGTTTGAGTCGTTGGGCTCTCACAGCTGAAGGTGATGGAAAAGCA
CTTATAAAATAGAAGATAAAATTTCAAAAATATGATATTTTTATGACTAAATATGCTTGGATTA
TGCAATAGCATATGTAATGTGGGAATGTTTTCCTAAGTAATAAACTATGTGATCTGTACTTCCA
CATGACTGGGTGTTGATGGGAGGTAGGCTCTCCCTGGTGCCGGCCCAGTGCTTGTCAGGTTTGC
TGACAAGTCACATCATATTGTAATTCTATTCTTTGCAGCTCAAGCATGCAGTATGAATACTGTG
TATTTTTTTAAAAAAGAACTTAGTATCAAGGCTTCAGAAAATGCCATTCACGGCATCTCTTCTG
TATAATGTGGAAAAAAATATCATTAAAAATTTACCCTTTCAAAGTGCAGCTTATTATTCTCAAT
TGTAAATGCAACTACTTTACTCTAATTTCCTCCTCCACCTATTTCGATGTCATATATAGGGATC
TGAGAAATGACTTCATCTGTTCAATAAAATGTGAAACAAATTTTAATACCAAATAAGTTTTAAC
ATACTATGTAGCTAAGCTTTGTTTATTTGAGGTATAGCTATATAAATATTCATTCCTACATTAC
CCCAGAATGTGTGTATACAGTTTCTATAAAAGATAAAATTGGTATCCTCATAATTTTAACAAAG
AGAATACCTTAAACTCCTATTTATTATTTAGAACCAAATATGTAATTTTATAGTTTGGTTTACC
CACTACTCATCTGCAAAGGCCAGATTTTTCATTTCTTTTATATTTTTAAGTTATGGTTTTTAAA
GCTGTATGATCCTCCATGGATCTCACATATACAGCACTTAATATTTTATTAAATGTTCAGGTAA
CAATTCTACTGAATTTATGTAATGATGATGGTATTATCTAGCAAACATTTTAGAATCTTATACT
ATCAAATATTTTGAGGGAGACATAGTCGTACTGTTTTCTGAAATAATGGATTTTAGAATATTAT
TTTAAACATCTCTTGGATTTACAATTATAACTGTGTATAAAGCATTTGAAGTGAAGGTAATTTA
AGGTAAAACTAAGAAGTCTGAAAGTTTTATTTCCAATCAAGTGACTTGGGTCTGTCAGTCAGCC
TCCCCGTCCTCGGCTTCTGTAGATCTTGTCTCTCTTTGCATTGTTCGAGGTACGTGGCTTTTGG
AGATCTCACATGAAAATGGTTATTAATTGTATATTTCATTCCCAATTTGTGTGTGTTGGGGAGA
ATTTTTTAAAAAGTGGCTGTCAATTGTGTTGTATATCTCATTTTGGAAAGCAAGTGTGTAAGAC
ATCTGATAATTTCAGAACTTTTCTGTTTGTGTGTTTTTCAAAGATACCATGTTCCTTCATCATG
TTTTGGAGACTGTTTAAAATTTGTCTTCCTAAATTCATGTAGAAATGATTTGAGGATATCAACA
TTTTGTATTAAACATGTTTTCAATTCATTGTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099358	(Get FASTA)	NCBI Sequence Viewer
	XP_006248306	(Get FASTA)	NCBI Sequence Viewer
	XP_006248309	(Get FASTA)	NCBI Sequence Viewer
	XP_006248310	(Get FASTA)	NCBI Sequence Viewer
	XP_017453420	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZF42	(Get FASTA)	NCBI Sequence Viewer
	EDM11051	(Get FASTA)	NCBI Sequence Viewer
	EDM11052	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043376
	ENSRNOP00000082802
	ENSRNOP00000083696
	ENSRNOP00000084584

RefSeq Acc Id:

NP_001099358 ⟸ NM_001105888

- UniProtKB:

D3ZF42 (UniProtKB/Swiss-Prot), A0A8I5ZZQ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDRARPGRRRASSEIVTEGKRKKSSPADLQKITKLLTVKSEDVLAQSPLPKLRGSECWWTRSLR
NKVICLDHKTTKAAHGCPPKALPKRHLKVMLTNVLWTDLGREFRKTLPRNDAKLCDTSKVQSDS
LPSTSVDSIETCQRLDPLHQSLNLSERIPRVILTDIRQTELGRKYLKIPSVTEASLSDTASPKS
EELSSSADGSLESCQNVNHLKSFLSERGSKPSRTGDISAKEAANGRQEQGDDGDIAPEMVTPQS
KDFNSGNKGDYHEEGTSNKNTSYSHSETDHTPVSRKRKKRGRSNFHNSHNPKSSVDKSTEYIKE
EENESTVSSKLEESNEDSHQDPAPPEGLTPDSLETEATNVCSFVVQEPDVSAASGRACSPNKSS
ESSVSSEVAENSSAAEKGEASTVKEAPPPGGNSEENQLLMSAEPIVVSSDEEGPVEHKNSVILK
LQPSQDYEFMSENQTTSDPQLSELMLGACESVQVSSELCPYNPDMENISCINPNSEMDLKLDFI
FTCVYIGKIKGTSKGCITFTKKYIKIPFQVSMNEISLTVDTARLKRFGLWESKDDDHSKRSHAI
LFLWVSSNYLQDIQTQLENPMLSQQSKANEFIFLELNSPISQREELKLKDIMMEIGATNGELQL
SCPLPWVQAFPLFQDLSPQEISFLHYYCASASSFPAVAGADMKKKPVSQPSNADVVKPTYTFLH
KQSSGCYSLSITSSPDEEWREVRNTGPVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVII
DFYLKYLLLEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINI
FNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQEFQDQQSQHDNKTIDNDPHTTSTV
FTSAEESQSTETSMSVPKKMCKRPCILILDSLKAASIQNTVQNLREYLEVEWEVKRKTHREFSK
TNMVDLCPKVPKQDNSSDCGVYLLQYVESFFQDPIVNFELPIHLEKWFPRHVIKTKREDIRELI
LKLHLQQQKGSSS

hide sequence

RefSeq Acc Id:	XP_006248310 ⟸ XM_006248248
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZZQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDRARPGRRRASSEIVTEGKRKKSSPADLQKITKLLTVKSEDVLAQSPLPKLRGSECWDFPLEG WTRSLRNKVICLDHKTTKAAHGCPPKALPKRGSKPSRTGDISAKEAANGRQEQGDDGDIAPEMV TPQSKDFNSGNKGDYHEEGTSNKNTSYSHSETDHTPVSRKRKKRGRSNFHNSHNPKSSVDKSTE YIKEEENESTVSSKLEESNEDSHQDPAPPEGLTPDSLETEATNVCSFVVQEPDVSAASGRACSP NKSSESSVSSEVAENSSAAEKGEASTVKEAPPPGGNSEENQLLMSAEPIVVSSDEEGPVEHKNS VILKLQPSQDYEFMSENQTTSDPQLSELMLGACESVQVSSELCPYNPDMENISCINPNSEMDLK LDFIFTCVYIGKIKGTSKGCITFTKKYIKIPFQVSMNEISLTVDTARLKRFGLWESKDDDHSKR SHAILFLWVSSNYLQDIQTQLENPMLSQQSKANEFIFLELNSPISQREELKLKDIMMEIGATNG ELQLSCPLPWVQAFPLFQDLSPQEISFLHYYCASASSFPAVAGADMKKKPVSQPSNADVVKPTY TFLHKQSSGCYSLSITSSPDEEWREVRNTGPVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLN DVIIDFYLKYLLLEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTR HINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQEFQDQQSQHDNKTIDNDPHT TSTVFTSAEESQSTETSMSVPKKMCKRPCILILDSLKAASIQNTVQNLREYLEVEWEVKRKTHR EFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFQDPIVNFELPIHLEKWFPRHVIKTKREDI RELILKLHLQQQKGSSS hide sequence

RefSeq Acc Id:	XP_006248309 ⟸ XM_006248247
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZVM4 (UniProtKB/TrEMBL), A0A8I5ZZQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDRARPGRRRASSEIVTEGKRKKSSPADLQKITKLLTVKSEDVLAQSPLPKLRGSECWDFPLEG WTRSLRNKVICLDHKTTKAAHGCPPKALPKRIPRVILTDIRQTELGRKYLKIPSVTEASLSDTA SPKSEELSSSADGSLESCQNVNHLKSFLSERGSKPSRTGDISAKEAANGRQEQGDDGDIAPEMV TPQSKDFNSGNKGDYHEEGTSNKNTSYSHSETDHTPVSRKRKKRGRSNFHNSHNPKSSVDKSTE YIKEEENESTVSSKLEESNEDSHQDPAPPEGLTPDSLETEATNVCSFVVQEPDVSAASGRACSP NKSSESSVSSEVAENSSAAEKGEASTVKEAPPPGGNSEENQLLMSAEPIVVSSDEEGPVEHKNS VILKLQPSQDYEFMSENQTTSDPQLSELMLGACESVQVSSELCPYNPDMENISCINPNSEMDLK LDFIFTCVYIGKIKGTSKGCITFTKKYIKIPFQVSMNEISLTVDTARLKRFGLWESKDDDHSKR SHAILFLWVSSNYLQDIQTQLENPMLSQQSKANEFIFLELNSPISQREELKLKDIMMEIGATNG ELQLSCPLPWVQAFPLFQDLSPQEISFLHYYCASASSFPAVAGADMKKKPVSQPSNADVVKPTY TFLHKQSSGCYSLSITSSPDEEWREVRNTGPVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLN DVIIDFYLKYLLLEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTR HINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQEFQDQQSQHDNKTIDNDPHT TSTVFTSAEESQSTETSMSVPKKMCKRPCILILDSLKAASIQNTVQNLREYLEVEWEVKRKTHR EFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFQDPIVNFELPIHLEKWFPRHVIKTKREDI RELILKLHLQQQKGSSS hide sequence

RefSeq Acc Id:	XP_006248306 ⟸ XM_006248244
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZZQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDRARPGRRRASSEIVTEGKRKKSSPADLQKITKLLTVKSEDVLAQSPLPKLRGSECWDFPLEG WTRSLRNKVICLDHKTTKAAHGCPPKALPKRHLKVMLTNVLWTDLGREFRKTLPRNDAKLCDTS KVQSDSLPSTSVDSIETCQRLDPLHQSLNLSERIPRVILTDIRQTELGRKYLKIPSVTEASLSD TASPKSEELSSSADGSLESCQNVNHLKSFLSERGSKPSRTGDISAKEAANGRQEQGDDGDIAPE MVTPQSKDFNSGNKGDYHEEGTSNKNTSYSHSETDHTPVSRKRKKRGRSNFHNSHNPKSSVDKS TEYIKEEENESTVSSKLEESNEDSHQDPAPPEGLTPDSLETEATNVCSFVVQEPDVSAASGRAC SPNKSSESSVSSEVAENSSAAEKGEASTVKEAPPPGGNSEENQLLMSAEPIVVSSDEEGPVEHK NSVILKLQPSQDYEFMSENQTTSDPQLSELMLGACESVQVSSELCPYNPDMENISCINPNSEMD LKLDFIFTCVYIGKIKGTSKGCITFTKKYIKIPFQVSMNEISLTVDTARLKRFGLWESKDDDHS KRSHAILFLWVSSNYLQDIQTQLENPMLSQQSKANEFIFLELNSPISQREELKLKDIMMEIGAT NGELQLSCPLPWVQAFPLFQDLSPQEISFLHYYCASASSFPAVAGADMKKKPVSQPSNADVVKP TYTFLHKQSSGCYSLSITSSPDEEWREVRNTGPVQKLIVYPPPPTKGGLGVTNEDLECLEEGEF LNDVIIDFYLKYLLLEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPDLSVAQRRHRRVRTW TRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQEFQDQQSQHDNKTIDNDP HTTSTVFTSAEESQSTETSMSVPKKMCKRPCILILDSLKAASIQNTVQNLREYLEVEWEVKRKT HREFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFQDPIVNFELPIHLEKWFPRHVIKTKRE DIRELILKLHLQQQKGSSS hide sequence

RefSeq Acc Id:	XP_017453420 ⟸ XM_017597931
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZZN8 (UniProtKB/TrEMBL), A0A8I5ZZQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDRARPGRRRASSEIVTEGKRKKSSPADLQKITKLLTVKSEDVLAQSPLPKLRGSECWDFPLEG WTRSLRNKVICLDHKTTKAAHGCPPKALPKRHLKVMLTNVLWTDLGREFRKTLPRNDAKLCDTS KVQSDSLPSTSVDSIETCQRLDPLHQSLNLSERGSKPSRTGDISAKEAANGRQEQGDDGDIAPE MVTPQSKDFNSGNKGDYHEEGTSNKNTSYSHSETDHTPVSRKRKKRGRSNFHNSHNPKSSVDKS TEYIKEEENESTVSSKLEESNEDSHQDPAPPEGLTPDSLETEATNVCSFVVQEPDVSAASGRAC SPNKSSESSVSSEVAENSSAAEKGEASTVKEAPPPGGNSEENQLLMSAEPIVVSSDEEGPVEHK NSVILKLQPSQDYEFMSENQTTSDPQLSELMLGACESVQVSSELCPYNPDMENISCINPNSEMD LKLDFIFTCVYIGKIKGTSKGCITFTKKYIKIPFQVSMNEISLTVDTARLKRFGLWESKDDDHS KRSHAILFLWVSSNYLQDIQTQLENPMLSQQSKANEFIFLELNSPISQREELKLKDIMMEIGAT NGELQLSCPLPWVQAFPLFQDLSPQEISFLHYYCASASSFPAVAGADMKKKPVSQPSNADVVKP TYTFLHKQSSGCYSLSITSSPDEEWREVRNTGPVQKLIVYPPPPTKGGLGVTNEDLECLEEGEF LNDVIIDFYLKYLLLEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPDLSVAQRRHRRVRTW TRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQEFQDQQSQHDNKTIDNDP HTTSTVFTSAEESQSTETSMSVPKKMCKRPCILILDSLKAASIQNTVQNLREYLEVEWEVKRKT HREFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFQDPIVNFELPIHLEKWFPRHVIKTKRE DIRELILKLHLQQQKGSSS hide sequence

Ensembl Acc Id:

ENSRNOP00000043376 ⟸ ENSRNOT00000044177

Ensembl Acc Id:

ENSRNOP00000083696 ⟸ ENSRNOT00000113252

Ensembl Acc Id:

ENSRNOP00000084584 ⟸ ENSRNOT00000106202

Ensembl Acc Id:

ENSRNOP00000080672 ⟸ ENSRNOT00000114384

Ensembl Acc Id:

ENSRNOP00000082802 ⟸ ENSRNOT00000117624

Ensembl Acc Id:

ENSRNOP00000046981 ⟸ ENSRNOT00000044900

Ensembl Acc Id:

ENSRNOP00000098682 ⟸ ENSRNOT00000167090

Ensembl Acc Id:

ENSRNOP00000109389 ⟸ ENSRNOT00000155760

Ensembl Acc Id:

ENSRNOP00000083635 ⟸ ENSRNOT00000103062

Ensembl Acc Id:

ENSRNOP00000092307 ⟸ ENSRNOT00000094394

Protein Domains

EGF-like SEA Ubiquitin-like protease family profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZF42-F1-model_v2	AlphaFold	D3ZF42	1-1037	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698112

Promoter ID:

EPDNEW_R8637

Type:

initiation region

Name:

Senp7_1

Description:

SUMO1/sentrin specific peptidase 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	47,027,607 - 47,027,667	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305510	AgrOrtholog
BioCyc Gene	G2FUF-21519	BioCyc
Ensembl Genes	ENSRNOG00000001616	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000044177	ENTREZGENE
	ENSRNOT00000106202	ENTREZGENE
	ENSRNOT00000113252	ENTREZGENE
	ENSRNOT00000117624	ENTREZGENE
Gene3D-CATH	1.10.418.20	UniProtKB/Swiss-Prot
	Ubiquitin-related	UniProtKB/Swiss-Prot
InterPro	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot
	Peptidase_C48_C	UniProtKB/Swiss-Prot
	Sentrin-specific_protease	UniProtKB/Swiss-Prot
KEGG Report	rno:288167	UniProtKB/Swiss-Prot
NCBI Gene	288167	ENTREZGENE
PANTHER	SENTRIN-SPECIFIC PROTEASE	UniProtKB/Swiss-Prot
	SENTRIN-SPECIFIC PROTEASE 7	UniProtKB/Swiss-Prot
Pfam	Peptidase_C48	UniProtKB/Swiss-Prot
PhenoGen	Senp7	PhenoGen
PROSITE	ULP_PROTEASE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001616	RatGTEx
Superfamily-SCOP	SSF54001	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZQB4_RAT	UniProtKB/TrEMBL
	A0A8I5ZVM4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZN8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZQ5_RAT	UniProtKB/TrEMBL
	A0A8I5ZZQ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJN4_RAT	UniProtKB/TrEMBL
	A0A8L2ULP5_RAT	UniProtKB/TrEMBL
	A0ABK0KWC1_RAT	UniProtKB/TrEMBL
	A0ABK0M2V5_RAT	UniProtKB/TrEMBL
	D3ZF42	ENTREZGENE
	F1LNC8_RAT	UniProtKB/TrEMBL
	SENP7_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-03-01	Senp7	SUMO specific peptidase 7	Senp7	SUMO1/sentrin specific peptidase 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-05	Senp7	SUMO1/sentrin specific peptidase 7	Senp7	Sumo1/sentrin/SMT3 specific peptidase 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-12-15	Senp7	Sumo1/sentrin/Smt3 specific peptidase 7	Senp7	SUMO1/sentrin specific protease 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-12-15	Senp7	Sumo1/sentrin/SMT3 specific peptidase 7	Senp7	Sumo1/sentrin/Smt3 specific peptidase 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Senp7	SUMO1/sentrin specific protease 7	Senp7_predicted	SUMO1/sentrin specific protease 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Senp7_predicted	SUMO1/sentrin specific protease 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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