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Gene: Ubtd2 (ubiquitin domain containing 2) Rattus norvegicus

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Symbol:

Ubtd2

Name:

ubiquitin domain containing 2

RGD ID:

1305506

Description:

Orthologous to human UBTD2 (ubiquitin domain containing 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC287178; RGD1305506; similar to dendritic cell-derived ubiquitin-like protein; ubiquitin domain-containing protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBTD2 (ubiquitin domain containing 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ubtd2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ubtd2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UBTD2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBTD2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ubtd2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBTD2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBTD2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ubtd2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ubtd2 (ubiquitin domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LEAP2 (liver enriched antimicrobial peptide 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Ubtd2 (ubiquitin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	UBTD2 (ubiquitin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ubtd2 (ubiquitin domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1172	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ubtd2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ubtd2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	17,542,008 - 17,604,548 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	17,542,061 - 17,606,309 (+)	Ensembl				GRCr8
mRatBN7.2	10	17,037,716 - 17,100,263 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	17,038,019 - 17,104,411 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	21,783,604 - 21,845,929 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	21,272,202 - 21,334,532 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	16,762,798 - 16,825,114 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	17,327,250 - 17,392,431 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	17,327,275 - 17,392,185 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	17,219,041 - 17,284,963 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	17,298,399 - 17,361,061 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	16,681,043 - 16,746,893 (+)	NCBI		Celera
RGSC_v3.1	10	17,299,667 - 17,360,392 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

diuron (EXP)

endosulfan (EXP)

formaldehyde (ISO)

lead(0) (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

serpentine asbestos (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:36328940

Genomics

Comparative Map Data

Ubtd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	17,542,008 - 17,604,548 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	17,542,061 - 17,606,309 (+)	Ensembl				GRCr8
mRatBN7.2	10	17,037,716 - 17,100,263 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	17,038,019 - 17,104,411 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	21,783,604 - 21,845,929 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	21,272,202 - 21,334,532 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	16,762,798 - 16,825,114 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	17,327,250 - 17,392,431 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	17,327,275 - 17,392,185 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	17,219,041 - 17,284,963 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	17,298,399 - 17,361,061 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	16,681,043 - 16,746,893 (+)	NCBI		Celera
RGSC_v3.1	10	17,299,667 - 17,360,392 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

UBTD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	172,209,646 - 172,284,117 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	172,209,645 - 172,284,077 (-)	Ensembl			hg38	GRCh38
GRCh37	5	171,636,650 - 171,710,768 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	171,569,255 - 171,643,400 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	167,669,063 - 167,693,766 (-)	NCBI		Celera
Cytogenetic Map	5	q35.1	NCBI
HuRef	5	166,732,474 - 166,805,065 (-)	NCBI		HuRef
CHM1_1	5	171,069,896 - 171,144,003 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	172,749,942 - 172,824,384 (-)	NCBI		T2T-CHM13v2.0

Ubtd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	32,405,370 - 32,468,709 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	32,405,370 - 32,466,687 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	32,455,370 - 32,518,709 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	32,455,370 - 32,516,687 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	32,355,372 - 32,418,709 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	32,355,372 - 32,418,709 (+)	NCBI		MGSCv36	mm8
Celera	11	34,873,145 - 34,938,094 (+)	NCBI		Celera
Cytogenetic Map	11	A4	NCBI
cM Map	11	18.94	NCBI

Ubtd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	24,996,881 - 25,072,610 (-)	Ensembl
ChiLan1.0	NW_004955408	25,000,517 - 25,072,610 (-)	NCBI	ChiLan1.0	ChiLan1.0

UBTD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	167,349,492 - 167,424,824 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	165,489,032 - 165,564,348 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	167,560,613 - 167,636,205 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	174,476,670 - 174,533,638 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	174,476,670 - 174,550,254 (-)	Ensembl			panPan2	panpan1.1

UBTD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	39,992,560 - 40,064,512 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	39,992,298 - 40,063,571 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	39,939,317 - 40,011,266 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	40,366,367 - 40,437,928 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	40,365,502 - 40,437,879 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	40,181,425 - 40,253,347 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	40,371,233 - 40,443,139 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	40,881,549 - 40,953,244 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ubtd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	94,330,026 - 94,353,960 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936609	3,053,374 - 3,076,670 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936609	3,053,391 - 3,076,649 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBTD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	51,907,488 - 51,982,658 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	51,907,168 - 51,982,661 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	56,400,719 - 56,422,469 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBTD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	74,375,336 - 74,447,234 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	74,377,647 - 74,447,286 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	4,175,181 - 4,247,350 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ubtd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	17,724,499 - 17,806,375 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	17,724,474 - 17,808,275 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ubtd2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	5,294,539 - 5,360,265 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ubtd2
617 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	33
Count of miRNA genes:	33
Interacting mature miRNAs:	33
Transcripts:	ENSRNOT00000005486
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	15762230	19737486	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

BF398393

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	17,080,176 - 17,080,300 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	17,371,894 - 17,372,017	NCBI	Rnor6.0
Rnor_5.0	10	17,264,426 - 17,264,549	UniSTS	Rnor5.0
RGSC_v3.4	10	17,340,464 - 17,340,587	UniSTS	RGSC3.4
Celera	10	16,726,806 - 16,726,929	UniSTS
RH 3.4 Map	10	145.61	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH138931

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	17,604,143 - 17,604,376 (+)	Marker Load Pipeline
mRatBN7.2	10	17,099,858 - 17,100,091 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	17,392,027 - 17,392,259	NCBI	Rnor6.0
Rnor_5.0	10	17,284,559 - 17,284,791	UniSTS	Rnor5.0
RGSC_v3.4	10	17,360,651 - 17,360,883	UniSTS	RGSC3.4
Celera	10	16,746,489 - 16,746,721	UniSTS
RH 3.4 Map	10	146.91	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	90	59	6	354	190	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001398573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005486 ⟹ ENSRNOP00000005486

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	17,542,061 - 17,606,309 (+)	Ensembl
mRatBN7.2 Ensembl	10	17,090,274 - 17,100,682 (+)	Ensembl
Rnor_6.0 Ensembl	10	17,327,275 - 17,392,185 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115802 ⟹ ENSRNOP00000084596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	17,542,280 - 17,606,309 (+)	Ensembl
mRatBN7.2 Ensembl	10	17,086,390 - 17,104,411 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117033 ⟹ ENSRNOP00000083435

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	17,038,019 - 17,098,332 (+)	Ensembl

RefSeq Acc Id:

NM_001398573 ⟹ NP_001385502

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,542,270 - 17,604,548 (+)	NCBI
mRatBN7.2	10	17,037,986 - 17,100,263 (+)	NCBI

RefSeq Acc Id:

XM_017597618 ⟹ XP_017453107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,542,545 - 17,604,548 (+)	NCBI
mRatBN7.2	10	17,038,259 - 17,100,263 (+)	NCBI
Rnor_6.0	10	17,327,250 - 17,392,431 (+)	NCBI

Sequence:

show sequence

CCTGGCTTAGCGGGAGGGACTCTGGCCCGGAGGACAACTCGGCGGCCGGATGGCGGCTCGTGGG
GCCGGGGAGGGGGACAGCCCCGAGTGCCCCCGACGGGCCCCGCCGCACCCCCAGCCCTTCCCGC
GTCGGTAGAGTTGGTCGGGCTCAGCTTTCCCGAGTTTCGGATGACAGCTGCCCCGTTGCTCTAG
GTCGAAACCAGCCTTTGAAAAAGGAAAAACCAAAATGGAAAAGCGACTATCCCATGACAGACGG
CCAACTGCGCAGCAAGAGGGATGAATTCTGGGACACTGCGCCAGCTTTTGAAGGCCGGAAAGAA
ATCTGGGATGCCTTGAAGGCTGCTGCACATGCCTTTGAAAGCAATGATCATGAACTGGCCCAGG
CCATCATTGACGGTGCAAACATAACACTACCACACGGTGCGCTGACAGAGTGCTACGATGAGCT
GGGGAACCGGTACCAGCTGCCAGTCTATTGCCTGGCCCCGCCCATCAACATGATAGAGGAGAAG
AGTGACATAGAGACTCTGGACATCCCCGAGCCGCCTCCCAGCTCTGGGCACGAATCTCAGCTCC
GTCTGCGGCTCTCCACGGGCAAAGACCTCAAGCTCGTGGTCCGCAGCACAGACACCGTGTTCCA
CATGAAGAGGCGCTTACACGCCACGGAGGGTGTGGAGCCAGGCAGCCAGCGGTGGTTCTTCTCC
GGCAGGCCTCTCACTGATAAGATGAAGCTGGAGGAGCTGAAGATCCCCAAGGACTATGTGGTGC
AGGTTATAGTGAGCCAGCCTGTGCAAAACCCAGCCCCAGTGGAGAACTGAGCTGGCCTGCCTTC
CTCCGCGGTCCCTTGGCTCCGCTCTATTGTTACCATTTCCTGCTCGAAGGCGTGAAATTTATTT
TCACTGCTCTGGATTCCCTATGAGTGGATTTAGTTCTGAGGAATTACCAGTGAAAACTTCCATC
TGTGATGGAGACCAACAAAAATAATAAAACACAGAGCCAGCCTCTGGTACTCTTATAATTACAA
TTTCTAATTTGAAAGACAGTTAAGAAGTAGATAACCATTTATTTTAAAAACATGTATCAACTCT
GTAATGGCTGTATTTAAATGATTTCGAATGTAAACAGACACTAAACCCATCAAAAACAGCACCA
AGCACCTTTTGGACACAGAATTTTTTACGACATATGTCAAATTATTTTTTCCAGAACCATCAGT
AACAGTTATAAAACTTAAGTTTTTTTTTAAGTGGAACCTAAAAGCATAGGGTTTTGCTTCTCTT
CTGGGTACGTATTCCTACTCCACCAGGAAGCAGTTGTCAGTATGGCTTCCCCGCTGCCTGCCCA
CCAGGGTCGGCTCCTTATTCACAGCCACTCAATCCTGTGACCATCACACTGGCAGAGGCACCCA
ATGGAGCACTGGGCAGTCATTTAGTAGGTAGTTGGAGCTCTCGCTCTCAGTTGAGAGCTCTCTA
GTCTTGATGCATAGGAATTTTAAAATGTCTGTGGTACTACCCAGGCTTGACAACTAGCTACTAC
GTAATGCCTTTGCTGATCTGCCACTCTTCGTGACCATTTTTGTAGCTGCCTGGCCCTGCCTATA
TATTTCTGGGCCAGACAAGACAGAAATGGAGTATAGCTACTTCCAGTCCAGAATAAAAAGCAGT
CCTCTCCTTCCTACCTGCAGGGAATGTGAGTAAAACCCTCTCTGCCTGTTCCTGGGAAAACTGT
GCCTATTCTCAGCCTTGGAGAAAACTCCAGTTCAGATTTTTCAAGTGTGACAGTTAACCGGTGT
CATTTAATCAGTGTTGGTGGGAACATATGTTAGCACCTGGCCCTAGACTGGAGTGTTTTCATTT
CACTCTGATTCCAGTCACATCACACCTTCCCAACAAAGGTAAATTAACCGCCATCTGCACACCA
GGCTAAGGGAGCAGAGGGAATCAGGCTGACCTCCTCTGGAGCCTCTGAAAGCTTGTTCTTGCCA
GGCATGGTGGTGCCTGCCTTTAATCCTGGGCCTTGGGAGGCAGAAAGAGGCAGCTCTTAGAATG
TGAGACCAGCCCAGAGTACATAGCTAGTTCTAGACCAGCCAGAACTACATAGTAAGGCAATGTC
TCCAAAAAAAGTTGGTTCCCTGAGAAGGGGGCTACCGTGTGAGCACACTGTCTCTGAGAGTTTG
TAAGATGTAAGCAGGAAATGAAGGCAGGTTCTGTGCTCTTCTCAGTCAGGAAATACCAAACCTC
CAGTGTGTATTTAGATGTCAAACGCCACAAATAAGTTCTAAGTAGTTTAAAATGTAATTTTTGA
GTGGTATTAAATTTCCTATAGCCTGTTTAAATCTATAATTTAACTTACCTTTCTGAGAACTCTA
ACCATTTCCATTTCCCTAATTCTGTTCATCATTTAAAGTTGTGACTGTACCTAATTTAGATCTG
ATGGGACCTTGGTCTAAATTCAGAAGTGCACAGCTTTAGCAGCCAAGGAGGGCGCTCACTTTCC
ACGTGGAGGCTCTAAGGTCCTCCAGGGCATCCCCCACCATCAGCAGGTCGGTTCATTTGTCACA
CTGAATAACAGTATCTCAGATTCCATCAGTTGGTAAAGTGTTTAAAAAACCTATTATTTTTCTA
AAGGAAATTTGATGGTGTCATGAATAACCTGATTGTTTTAAAAGGTCTTGTTTGTTTCCTGAGA
GTTTGTCCTAAAAGGTTTTTGTTTTTTGGGTTTTTTTTTTTTTTAATTTTAAAGGAACATATAC
TTTGAATAACGATCCTCCAGGCGTGGTGAGAAAAACCTAGGTGCTGGAAATTGTCAATAGGTTA
ATAACCTAGGTGAGAAAAAACATGGTGCTGGTAATCGTCAATAGGTCGATGTAAGACTGGATCA
ATACTTGATGTGTATCATTATAGTATGTAGGGGTTTTGTGCTTTTTTAAAAAAAAATTCAACTT
TT

hide sequence

RefSeq Acc Id:

XM_039087132 ⟹ XP_038943060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,542,032 - 17,604,548 (+)	NCBI
mRatBN7.2	10	17,037,746 - 17,100,263 (+)	NCBI

RefSeq Acc Id:

XM_039087133 ⟹ XP_038943061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,542,014 - 17,604,548 (+)	NCBI
mRatBN7.2	10	17,037,719 - 17,100,263 (+)	NCBI

RefSeq Acc Id:

XM_039087134 ⟹ XP_038943062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,587,560 - 17,604,548 (+)	NCBI
mRatBN7.2	10	17,083,274 - 17,100,263 (+)	NCBI

RefSeq Acc Id:

XM_039087135 ⟹ XP_038943063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,587,728 - 17,604,548 (+)	NCBI
mRatBN7.2	10	17,084,269 - 17,100,263 (+)	NCBI

RefSeq Acc Id:

XM_039087136 ⟹ XP_038943064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,542,008 - 17,595,774 (+)	NCBI
mRatBN7.2	10	17,037,716 - 17,091,500 (+)	NCBI

RefSeq Acc Id:

XM_039087137 ⟹ XP_038943065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,595,807 - 17,604,548 (+)	NCBI
mRatBN7.2	10	17,091,523 - 17,100,263 (+)	NCBI

RefSeq Acc Id:

XM_039087138 ⟹ XP_038943066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	17,542,008 - 17,602,002 (+)	NCBI
mRatBN7.2	10	17,037,719 - 17,097,703 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001385502	(Get FASTA)	NCBI Sequence Viewer
	XP_017453107	(Get FASTA)	NCBI Sequence Viewer
	XP_038943060	(Get FASTA)	NCBI Sequence Viewer
	XP_038943061	(Get FASTA)	NCBI Sequence Viewer
	XP_038943062	(Get FASTA)	NCBI Sequence Viewer
	XP_038943063	(Get FASTA)	NCBI Sequence Viewer
	XP_038943064	(Get FASTA)	NCBI Sequence Viewer
	XP_038943065	(Get FASTA)	NCBI Sequence Viewer
	XP_038943066	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04057	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005486.8
	ENSRNOP00000084596
	ENSRNOP00000084596.2

RefSeq Acc Id:	XP_017453107 ⟸ XM_017597618
- Peptide Label:	isoform X1
- UniProtKB:	A6HDF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTEC YDELGNRYQLPVYCLAPPINMIEEKSDIETLDIPEPPPSSGHESQLRLRLSTGKDLKLVVRSTD TVFHMKRRLHATEGVEPGSQRWFFSGRPLTDKMKLEELKIPKDYVVQVIVSQPVQNPAPVEN hide sequence

Ensembl Acc Id:

ENSRNOP00000005486 ⟸ ENSRNOT00000005486

RefSeq Acc Id:	XP_038943064 ⟸ XM_039087136
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038943061 ⟸ XM_039087133
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038943066 ⟸ XM_039087138
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038943060 ⟸ XM_039087132
- Peptide Label:	isoform X1
- UniProtKB:	A6HDF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038943062 ⟸ XM_039087134
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038943063 ⟸ XM_039087135
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038943065 ⟸ XM_039087137
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000084596 ⟸ ENSRNOT00000115802

Ensembl Acc Id:

ENSRNOP00000083435 ⟸ ENSRNOT00000117033

RefSeq Acc Id:	NP_001385502 ⟸ NM_001398573
- UniProtKB:	A0A8I5ZW20 (UniProtKB/TrEMBL)

Protein Domains

Ubiquitin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LVF9-F1-model_v2	AlphaFold	F1LVF9	1-190	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305506	AgrOrtholog
BioCyc Gene	G2FUF-25626	BioCyc
Ensembl Genes	ENSRNOG00000004137	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005486.9	UniProtKB/TrEMBL
	ENSRNOT00000115802	ENTREZGENE
	ENSRNOT00000115802.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.225.20	UniProtKB/TrEMBL
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/TrEMBL
InterPro	UBD	UniProtKB/TrEMBL
	UBD_sf	UniProtKB/TrEMBL
	Ubiquitin	UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
	UBTD1/2	UniProtKB/TrEMBL
NCBI Gene	287178	ENTREZGENE
PANTHER	PTHR13609	UniProtKB/TrEMBL
Pfam	UBD	UniProtKB/TrEMBL
	ubiquitin	UniProtKB/TrEMBL
PhenoGen	Ubtd2	PhenoGen
PROSITE	UBIQUITIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004137	RatGTEx
SMART	UBQ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54236	UniProtKB/TrEMBL
UniProt	A0A8I5ZW20	ENTREZGENE
	A0A8I6A1L9_RAT	UniProtKB/TrEMBL
	A6HDF2	ENTREZGENE, UniProtKB/TrEMBL
	F1LVF9_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Ubtd2	ubiquitin domain containing 2	RGD1305506_predicted	similar to dendritic cell-derived ubiquitin-like protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1305506_predicted	similar to dendritic cell-derived ubiquitin-like protein (predicted)	LOC287178_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC287178_predicted	similar to dendritic cell-derived ubiquitin-like protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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