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Gene: Gpbp1 (GC-rich promoter binding protein 1) Rattus norvegicus

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Symbol:

Gpbp1

Name:

GC-rich promoter binding protein 1

RGD ID:

1305492

Description:

Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and plasma membrane. Predicted to be active in nucleus. Orthologous to human GPBP1 (GC-rich promoter binding protein 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC294734; RGD1305492; similar to RIKEN cDNA 1700034P14; vasculin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GPBP1 (GC-rich promoter binding protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Gpbp1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gpbp1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GPBP1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GPBP1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gpbp1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GPBP1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GPBP1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gpbp1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gpbp1 (GC-rich promoter binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Gpbp1 (GC-rich promoter binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GPBP1 (GC-rich promoter binding protein 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gpbp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gpbp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	44,756,861 - 44,824,281 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	44,756,861 - 44,824,315 (-)	Ensembl				GRCr8
mRatBN7.2	2	43,023,504 - 43,091,146 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	43,023,504 - 43,090,907 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	50,138,349 - 50,204,256 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	48,196,813 - 48,262,719 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	43,048,332 - 43,114,247 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	43,002,041 - 43,070,236 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	43,002,044 - 43,068,677 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	62,047,275 - 62,115,979 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	42,751,497 - 42,800,922 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	38,808,458 - 38,874,557 (-)	NCBI		Celera
RGSC_v3.1	2	42,671,862 - 42,702,633 (-)	NCBI
Cytogenetic Map	2	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-vinylcyclohexene dioxide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aflatoxin M1 (ISO)

alpha-pinene (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

copper(II) sulfate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

fenthion (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

GW 4064 (ISO)

hypochlorous acid (ISO)

menadione (ISO)

methidathion (ISO)

methimazole (EXP)

methotrexate (ISO)

methoxychlor (ISO)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (ISO)

PCB138 (EXP)

phenobarbital (ISO)

poly(I:C) (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IBA)

Cellular Component

cytosol (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

DNA binding (IEA,ISO)

DNA-binding transcription factor activity (IBA,IEA,ISO)

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14612417	PMID:22993404

Genomics

Comparative Map Data

Gpbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	44,756,861 - 44,824,281 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	44,756,861 - 44,824,315 (-)	Ensembl				GRCr8
mRatBN7.2	2	43,023,504 - 43,091,146 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	43,023,504 - 43,090,907 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	50,138,349 - 50,204,256 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	48,196,813 - 48,262,719 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	43,048,332 - 43,114,247 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	43,002,041 - 43,070,236 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	43,002,044 - 43,068,677 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	62,047,275 - 62,115,979 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	42,751,497 - 42,800,922 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	38,808,458 - 38,874,557 (-)	NCBI		Celera
RGSC_v3.1	2	42,671,862 - 42,702,633 (-)	NCBI
Cytogenetic Map	2	q14	NCBI

GPBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	57,174,059 - 57,264,679 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	57,173,821 - 57,265,668 (+)	Ensembl			hg38	GRCh38
GRCh37	5	56,469,886 - 56,560,506 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	56,505,701 - 56,594,666 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	53,424,015 - 53,515,385 (+)	NCBI		Celera
Cytogenetic Map	5	q11.2	NCBI
HuRef	5	53,441,632 - 53,533,047 (+)	NCBI		HuRef
CHM1_1	5	56,472,980 - 56,563,579 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	58,002,364 - 58,093,366 (+)	NCBI		T2T-CHM13v2.0

Gpbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	111,562,214 - 111,626,658 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	111,562,214 - 111,626,645 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	111,425,680 - 111,490,128 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	111,425,680 - 111,490,111 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	112,215,888 - 112,280,249 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	112,546,560 - 112,610,717 (-)	NCBI		MGSCv36	mm8
Celera	13	115,738,989 - 115,803,291 (-)	NCBI		Celera
Cytogenetic Map	13	D2.2	NCBI
cM Map	13	63.23	NCBI

Gpbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	10,682,143 - 10,741,377 (-)	Ensembl
ChiLan1.0	NW_004955446	10,685,476 - 10,741,375 (-)	NCBI	ChiLan1.0	ChiLan1.0

GPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	56,653,129 - 56,742,710 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	54,805,767 - 54,896,187 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	56,741,133 - 56,831,009 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	58,373,217 - 58,463,712 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	58,373,217 - 58,463,580 (-)	Ensembl			panPan2	panpan1.1

GPBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	44,243,833 - 44,316,498 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	44,246,288 - 44,316,032 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	41,305,115 - 41,377,938 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	44,725,539 - 44,798,552 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	44,725,818 - 44,801,357 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	41,801,788 - 41,874,299 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	42,606,077 - 42,678,615 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	43,425,746 - 43,498,621 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	201,782,394 - 201,849,810 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	10,719,487 - 10,786,310 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	10,718,992 - 10,786,347 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	36,217,261 - 36,297,818 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	36,217,235 - 36,298,007 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	38,490,108 - 38,570,136 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	53,408,272 - 53,495,861 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	53,444,677 - 53,498,155 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666049	2,312,243 - 2,400,256 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624759	1,992,747 - 2,060,590 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gpbp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	185,554,276 - 185,619,418 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gpbp1
371 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	131
Count of miRNA genes:	87
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000036658
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9685065	Swd6	Spike wave discharge measurement QTL 6	5.8	0.01	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge rate (CMO:0001739)	2	40957423	50526673	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

WI-21467

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,024,035 - 43,024,288 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,002,573 - 43,002,825	NCBI	Rnor6.0
Rnor_5.0	2	62,047,807 - 62,048,059	UniSTS	Rnor5.0
RGSC_v3.4	2	42,752,026 - 42,752,278	UniSTS	RGSC3.4
Celera	2	38,808,987 - 38,809,239	UniSTS
Cytogenetic Map	2	q14	UniSTS

AA957560

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,023,522 - 43,023,717 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,002,060 - 43,002,254	NCBI	Rnor6.0
Rnor_5.0	2	62,047,294 - 62,047,488	UniSTS	Rnor5.0
RGSC_v3.4	2	42,751,513 - 42,751,707	UniSTS	RGSC3.4
Celera	2	38,808,474 - 38,808,668	UniSTS
RH 3.4 Map	2	205.9	UniSTS
Cytogenetic Map	2	q14	UniSTS

RH135164

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,088,654 - 43,088,858 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,067,745 - 43,067,948	NCBI	Rnor6.0
Rnor_5.0	2	62,113,626 - 62,113,829	UniSTS	Rnor5.0
RGSC_v3.4	2	42,799,990 - 42,800,193	UniSTS	RGSC3.4
Celera	2	38,873,625 - 38,873,828	UniSTS
RH 3.4 Map	2	206.9	UniSTS
Cytogenetic Map	2	q14	UniSTS

RH124303

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,089,428 - 43,089,540 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	43,068,519 - 43,068,630	NCBI	Rnor6.0
Rnor_5.0	2	62,114,400 - 62,114,511	UniSTS	Rnor5.0
RGSC_v3.4	2	42,800,764 - 42,800,875	UniSTS	RGSC3.4
Celera	2	38,874,399 - 38,874,510	UniSTS
Cytogenetic Map	2	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	68	167	91	90	59	107	59	6	386	208	11	152	95	94	31	18	18

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001408813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC161907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JQ013734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036658 ⟹ ENSRNOP00000038526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	44,756,861 - 44,824,281 (-)	Ensembl
mRatBN7.2 Ensembl	2	43,023,658 - 43,090,907 (-)	Ensembl
Rnor_6.0 Ensembl	2	43,002,044 - 43,068,677 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090616 ⟹ ENSRNOP00000073461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	44,756,865 - 44,824,315 (-)	Ensembl
mRatBN7.2 Ensembl	2	43,023,504 - 43,090,893 (-)	Ensembl
Rnor_6.0 Ensembl	2	43,002,532 - 43,067,956 (-)	Ensembl

RefSeq Acc Id:

NM_001106410 ⟹ NP_001099880

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,824,281 (-)	NCBI
mRatBN7.2	2	43,023,504 - 43,090,933 (-)	NCBI
Rnor_6.0	2	43,002,044 - 43,068,677 (-)	NCBI
Rnor_5.0	2	62,047,275 - 62,115,979 (-)	NCBI
RGSC_v3.4	2	42,751,497 - 42,800,922 (-)	RGD
Celera	2	38,808,458 - 38,874,557 (-)	RGD

Sequence:

show sequence

GTGACTGAGTTTGGCAGATATGAAGATCATCATCTAGGTTTTGTTTAAAGGCCCCGGATATTTC
AAGTGGCCATTTTGGAATTACAGTTTGTTTTTGTTTGGGGTAATTTTGCCCCAGAAGTTTATTA
AAATTGGCAAGAATCATCTCTGAAGTGAATGATAGTAGTGAACAACGAGCTACTTAAAAGACCC
AGCCATTTCTTCAGTATTTTGGTTCAAACGGATTATATAAGTGGTTAAAGTATTTCGTCTGGTG
TTAATTTTGTCTCTTCCCCCTCTCCTGTTGGTGTTCTTCAGCCAAAACTGTAAGATATGTTTGA
TTTGTGTACTGAGTAGTTTCAGCAGTTTCAAATTACTGTTTAAATATTGCTGAAGTTTTGTGGC
AGTTCTTTTTACCTTTATTAAAAGTTTTAGTAATTTTTGACTTCAGCTCTTTTCATATTACAAT
GGGACAGCTTTTCTAAATGAAGACATTGAAAGAATACAGAGTTTTTTTCTTCTTATCTTTTATT
TACTTGGGAATGTAAGATGTTCCAGTTCCACAGCAGCATGGTAGTGTTGAGATAGCTCTTTGTT
GTCTGTATACGCTGATGTTTAGACGTAATCTTCAGATGTGAAATTTTTCTTTTTGTTTCTGCTT
TTTGGCACATAAATTGGATATTTCATCTGGATTGGATAAGTACAACAGTGACAAATACATGGAA
TAGTAAAGAAGACCTTGCTCTTGAATCCAAGGAACTTGGCTAATTCTGGATCTAGCCATATGAA
AACTTCAAAATAAATATGGGTAGCTGACTTCAAGTAACTCTATGTCAAATAGTCATAGGTTAAG
TATCTTCAAAGAACTTGGATATTTCAGAGGATACAAAATAAAAAAACAAACTGGAAAACATAAA
GCTTATAGAGAAAAAATCAACACCTTCCTGTGCAGTCCCCTTGGAATTTGGACTTGCCATGAGG
TGTTGAAGCCTTGTTTCACTGAGTTGGAGAGACTGGACCTAAATGGCGCAGCATGACTTTGCTC
CAGCCTGGCTTAATTTTCCTACTCCTCCATCATCAACAAAGTCATCATTGAATTTTGAGAAGCA
TTCTGAAAATTTTTCATGGACAGAAAATCGTTATGATGTGAGTCGTCGACGACACAATTCTTCA
GATGGCTTTGATTCTGGTATTGGACGTCCTAATGGAGGTAATTTTGGGAGGAAAGAAAAAAATG
GATGGCGTACGCATGGCAGAAATGGTACAGAAAACATAAATCATCGAGGGGGATACCATGGTGG
AAATTCCCGTTCTCGTAGCAGTATTTTCCATTCTGGAAAAAGCCAAGGACTACATGAAAACAAC
ATCCCTGACAATGAAACTGGGAGGAAAGAAGACAAAAGAGAACGCAGACAGTTTGAGGCTGAGG
ATTTTCCATCTTTAAATCCTGAATATGAGAGAGAACCAAATCAGAATAAATCTTTAGCTGCGGG
CGTATGGGGCCTACACGCCCAGACACACACATACCCAACCAAAAAAATCTCCCAAGCTCCTCTC
TTAGAATATCCCCCGAATCCTAAATCTAGAACTCCAAGAATGCTGGTCATTAAGAAAGGTAATA
CAAAAGACTTACAGCTATCTGGATTCCCAGTAGCAGGAAACCTCCAGTCACAACCAGTTAAGAA
TGGAACTGGTCCGAGTGTTTATAAAGGCTTAGTCCCCAAACCTGCTGTTCCACCTACAAAACCT
ACACAATGGAAAAGCCAAACTAAAGAAAACAAAGTTGGAACTTCTTTTCCTCATGAATCTACAT
ATGGTGTTGGCAACTTTAATACTTTTAAGTCAACGGCCAAGAATATTAGCCCATCAACAAATTC
AGTGAAAGAGTGTAATCGTTCAAATTCTTCTTCGCCTGTTGACAAACTTAATCAGCAGCCTCGT
TTAACTAAACTGACACGAATGCGCAGTGATAAAAAAAGTGAATTTTTGAAAGCATTGAAAAGGG
ACAGAGTAGAAGAGGAGCATGAAGATGAAAGCCATGCTGGCTCAGAGAAGGATGACGACTCATT
TAATTTGCATAACAGCAATAGTACTCACCAAGAAAGAGATATAAACAGAAACTTTGATGAAAAT
GAAATCCCACAGGAGAACGGCAATGCCTCGGTGATTTCTCAACAGATCATTCGTTCTTCGACTT
TTCCACAAACTGATGTTCTTTCCAGTTCACTTGAGGCAGAACACAGATTATTAAAAGAGATGGG
CTGGCAGGAAGACAGTGAAAATGATGAAACATGTGCTCCCTTAACTGAGGATGAAATGAGAGAA
TTCCAAGTTATTAGTGAACAGTTACAGAAGAATGGTCTGAGAAAAAATGGTATTTTGAAAAACG
GCCTGATCTGTGACTTCAAGTTTGGACCCTGGAAAAACAGCACTTTCAAACCCACAATTGAGAA
TGATGACACAGAGACAAGTAGCAGTGACACATCAGATGATGACGATGTGTGAAGGATTTCCTCA
CAGCTTTAGAAATTTTAGTGTGATACATCTCTCATGCAGTTTGGGGTGAATTGTAAAAATGAAG
AACTATAATTTATGTAGTGAACCTACCCCATTAGAAGATGATTTTTTTGGGGGACTTCAATATG
AAGAAAACCAAGAATGTTGTGTTGGGCTGTGTTGAACATTATTTCTTTGTAAATGAATGTTGTA
GAAATGAGGACTTTGGTTGATCCAACATTGACTTTCTTCATCACTGCAGCATTTCTCTTGACTA
GCAATGTGACGATGTAACAAATGAGATTTTCTCATTTAATAATAAAAAATTGTGTAATGTTTTG
CAAAGCTTCTGTCTTAAAATGTTCAGGTCTTAAGGTACAAGGCAGCTTCCAGTTTTGCTTGCAG
AGTCCTCTCTTTTTCCAACAGTGGAAATCTTCAACTCTACTTTGTGCACCTCCTCACCCCACTT
CCCCCTAAAACAAAGCAACAGCAAAAAGGAAAATGTAGCATGTTGGCTAAAACTGGAGCAAAGT
GCACTAAAACATTAACTTCTTGAACTCAACTCTTGTACTAAGCAAGTCACCTTTCAGAACAAAT
TTCTCTTTAGTCTTTCGTAGTGCAGTGAGTGCGAGAGAGGAGACGTGCCGGGCGTTCTTCCAAG
CTTTAGGAGGTGCTTGTCCAGAGCTTTATTTGGTATACTGTCAGATCAGGATTTTCAGAGGTGA
TTGGAAAAGTTGTGGGAAAACTTATTTTGATAAATTATTACACATGCAGAAAACCTGATCACTG
ACTGGATCTGTCCACAACATGGAAAATAAACTGGATTTTCA

hide sequence

RefSeq Acc Id:

NM_001408813 ⟹ NP_001395742

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,824,281 (-)	NCBI
mRatBN7.2	2	43,023,504 - 43,090,933 (-)	NCBI

RefSeq Acc Id:

XM_017590708 ⟹ XP_017446197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,824,267 (-)	NCBI
mRatBN7.2	2	43,023,504 - 43,091,146 (-)	NCBI
Rnor_6.0	2	43,002,041 - 43,070,236 (-)	NCBI

Sequence:

show sequence

ACCGGGGCGTGAGCGGTTACTTGGGCCAGAAGGTTCTGTGGTGGAGGCCCTCCTCCTGCTGCCC
CGCCCAGTGGGTTCGTTTGCACGGCTGCTTCTACACCCTTTCTTCCTCCTCTTTCCTCTCGCCC
CGCCTTCCTTCTCTACTTCTCAACCTCTCTGGTTCCTTCCCCCTCCTCGCCACCTTCCACGATC
TCGCGAGACTTGGCCCAGAACATTGCGGATCGGGTCGGCGCCATTTTGGGACTGAGACTGGTTG
TGGGGGAGGGAAAAGCGGCAAAAGGGGATTATTCAAAGTACCGAAAACCTCCTCCCGGGATCGA
GCGCAGCGGCACCCCCAGGCCAGGGGCACCTCTGGTGGGGCAGAAGGTGACTGAGTTTGGCAGA
TATGAAGATCATCATCTAGGTTTTGTTTAAAGGCCCCGGATATTTCAAGTGGCCATTTTGGAAT
TACAGTTTGTTTTTGTTTGGGGTAATTTTGCCCCAGAAGTTTATTAAAATTGGCAAGAATCATC
TCTGAAGTGAATGATAGTAGTGAACAACGAGCTACTTAAAAGACCCAGCCATTTCTTCAGTATT
TTGGTTCAAACGGATTATATAAGTGGTTAAAGTATTTCGTCTGGTGTTAATTTTGTCTCTTCCC
CCTCTCCTGTTGGTGTTCTTCAGCCAAAACTGTAAGATATGTTTGATTTGTGTACTGAGTAGTT
TCAGCAGTTTCAAATTACTGTTTAAATATTGCTGAAGTTTTGTGGCAGTTCTTTTTACCTTTAT
TAAAAGTTTTAGTAATTTTTGACTTCAGCTCTTTTCATATTACAATGGGACAGCTTTTCTAAAT
GAAGACATTGAAAGAATACAGAGTTTTTTTCTTCTTATCTTTTATTTACTTGGGAATGTAAGAT
GTTCCAGTTCCACAGCAGCATGGTAGTGTTGAGATAGCTCTTTGTTGTCTGTATACGCTGATGT
TTAGACGTAATCTTCAGATGTGAAATTTTTCTTTTTGTTTCTGCTTTTTGGCACATAAATTGGA
TATTTCATCTGGATTGGATAAGTACAACAGTGACAAATACATGGAATAGTAAAGAAGACCTTGC
TCTTGAATCCAAGGAACTTGGCTAATTCTGGATCTAGCCATATGAAAACTTCAAAATAAATATG
GGTAGCTGACTTCAAGTAACTCTATGTCAAATAGTCATAGGTTAAGTATCTTCAAAGAACTTGG
ATATTTCAGAGGATACAAAATAAAAAAACAAACTGGAAAACATAAAGCTTATAGAGAAAAAATC
AACACCTTCCTGTGCAGTCCCCTTGGAATTTGTAAGTACCTCTATGGGACTTGCCATGAGGTGT
TGAAGCCTTGTTTCACTGAGTTGGAGAGACTGGACCTAAATGGCGCAGCATGACTTTGCTCCAG
CCTGGCTTAATTTTCCTACTCCTCCATCATCAACAAAGTCATCATTGAATTTTGAGAAGCATTC
TGAAAATTTTTCATGGACAGAAAATCGTTATGATGTGAGTCGTCGACGACACAATTCTTCAGAT
GGCTTTGATTCTGGTATTGGACGTCCTAATGGAGGTAATTTTGGGAGGAAAGAAAAAAATGGAT
GGCGTACGCATGGCAGAAATGGTACAGAAAACATAAATCATCGAGGGGGATACCATGGTGGAAA
TTCCCGTTCTCGTAGCAGTATTTTCCATTCTGGAAAAAGCCAAGGACTACATGAAAACAACATC
CCTGACAATGAAACTGGGAGGAAAGAAGACAAAAGAGAACGCAGACAGTTTGAGGCTGAGGATT
TTCCATCTTTAAATCCTGAATATGAGAGAGAACCAAATCAGAATAAATCTTTAGCTGCGGGCGT
ATGGGGCCTACACGCCCAGACACACACATACCCAACCAAAAAAATCTCCCAAGCTCCTCTCTTA
GAATATCCCCCGAATCCTAAATCTAGAACTCCAAGAATGCTGGTCATTAAGAAAGGTAATACAA
AAGACTTACAGCTATCTGGATTCCCAGTAGCAGGAAACCTCCAGTCACAACCAGTTAAGAATGG
AACTGGTCCGAGTGTTTATAAAGGCTTAGTCCCCAAACCTGCTGTTCCACCTACAAAACCTACA
CAATGGAAAAGCCAAACTAAAGAAAACAAAGTTGGAACTTCTTTTCCTCATGAATCTACATATG
GTGTTGGCAACTTTAATACTTTTAAGTCAACGGCCAAGAATATTAGCCCATCAACAAATTCAGT
GAAAGAGTGTAATCGTTCAAATTCTTCTTCGCCTGTTGACAAACTTAATCAGCAGCCTCGTTTA
ACTAAACTGACACGAATGCGCAGTGATAAAAAAAGTGAATTTTTGAAAGCATTGAAAAGGGACA
GAGTAGAAGAGGAGCATGAAGATGAAAGCCATGCTGGCTCAGAGAAGGATGACGACTCATTTAA
TTTGCATAACAGCAATAGTACTCACCAAGAAAGAGATATAAACAGAAACTTTGATGAAAATGAA
ATCCCACAGGAGAACGGCAATGCCTCGGTGATTTCTCAACAGATCATTCGTTCTTCGACTTTTC
CACAAACTGATGTTCTTTCCAGTTCACTTGAGGCAGAACACAGATTATTAAAAGAGATGGGCTG
GCAGGAAGACAGTGAAAATGATGAAACATGTGCTCCCTTAACTGAGGATGAAATGAGAGAATTC
CAAGTTATTAGTGAACAGTTACAGAAGAATGGTCTGAGAAAAAATGGTATTTTGAAAAACGGCC
TGATCTGTGACTTCAAGTTTGGACCCTGGAAAAACAGCACTTTCAAACCCACAATTGAGAATGA
TGACACAGAGACAAGTAGCAGTGACACATCAGATGATGACGATGTGTGAAGGATTTCCTCACAG
CTTTAGAAATTTTAGTGTGATACATCTCTCATGCAGTTTGGGGTGAATTGTAAAAATGAAGAAC
TATAATTTATGTAGTGAACCTACCCCATTAGAAGATGATTTTTTTGGGGGACTTCAATATGAAG
AAAACCAAGAATGTTGTGTTGGGCTGTGTTGAACATTATTTCTTTGTAAATGAATGTTGTAGAA
ATGAGGACTTTGGTTGATCCAACATTGACTTTCTTCATCACTGCAGCATTTCTCTTGACTAGCA
ATGTGACGATGTAACAAATGAGATTTTCTCATTTAATAATAAAAAATTGTGTAATGTTTTGCAA
AGCTTCTGTCTTAAAATGTTCAGGTCTTAAGGTACAAGGCAGCTTCCAGTTTTGCTTGCAGAGT
CCTCTCTTTTTCCAACAGTGGAAATCTTCAACTCTACTTTGTGCACCTCCTCACCCCACTTCCC
CCTAAAACAAAGCAACAGCAAAAAGGAAAATGTAGCATGTTGGCTAAAACTGGAGCAAAGTGCA
CTAAAACATTAACTTCTTGAACTCAACTCTTGTACTAAGCAAGTCACCTTTCAGAACAAATTTC
TCTTTAGTCTTTCGTAGTGCAGTGAGTGCGAGAGAGGAGACGTGCCGGGCGTTCTTCCAAGCTT
TAGGAGGTGCTTGTCCAGAGCTTTATTTGGTATACTGTCAGATCAGGATTTTCAGAGGTGATTG
GAAAAGTTGTGGGAAAACTTATTTTGATAAATTATTACACATGCAGAAAACCTGATCACTGACT
GGATCTGTCCACAACATGGAAAATAAACTGGATTTTCAGAA

hide sequence

RefSeq Acc Id:

XM_017590709 ⟹ XP_017446198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,824,267 (-)	NCBI
mRatBN7.2	2	43,023,504 - 43,091,146 (-)	NCBI
Rnor_6.0	2	43,002,041 - 43,070,236 (-)	NCBI

Sequence:

show sequence

ACCGGGGCGTGAGCGGTTACTTGGGCCAGAAGGTTCTGTGGTGGAGGCCCTCCTCCTGCTGCCC
CGCCCAGTGGGTTCGTTTGCACGGCTGCTTCTACACCCTTTCTTCCTCCTCTTTCCTCTCGCCC
CGCCTTCCTTCTCTACTTCTCAACCTCTCTGGTTCCTTCCCCCTCCTCGCCACCTTCCACGATC
TCGCGAGACTTGGCCCAGAACATTGCGGATCGGGTCGGCGCCATTTTGGGACTGAGACTGGTTG
TGGGGGAGGGAAAAGCGGCAAAAGGGGATTATTCAAAGTACCGAAAACCTCCTCCCGGGATCGA
GCGCAGCGGCACCCCCAGGCCAGGGGCACCTCTGGTGGGGCAGAAGGTGACTGAGTTTGGCAGA
TATGAAGATCATCATCTAGGTTTTGTTTAAAGGCCCCGGATATTTCAAGTGGCCATTTTGGAAT
TACAGTTTGTTTTTGTTTGGGGTAATTTTGCCCCAGAAGTTTATTAAAATTGGCAAGAATCATC
TCTGAAGTGAATGATAGTAGTGAACAACGAGCTACTTAAAAGACCCAGCCATTTCTTCAGTATT
TTGGTTCAAACGGATTATATAAGTGGTTAAAGTATTTCGTCTGGTGTTAATTTTGTCTCTTCCC
CCTCTCCTGTTGGTGTTCTTCAGCCAAAACTGTAAGATATGTTTGATTTGTGTACTGAGTAGTT
TCAGCAGTTTCAAATTACTGTTTAAATATTGCTGAAGTTTTGTGGCAGTTCTTTTTACCTTTAT
TAAAAGTTTTAGTAATTTTTGACTTCAGCTCTTTTCATATTACAATGGGACAGCTTTTCTAAAT
GAAGACATTGAAAGAATACAGAGTTTTTTTCTTCTTATCTTTTATTTACTTGGGAATGTAAGAT
GTTCCAGTTCCACAGCAGCATGGTAGTGTTGAGATAGCTCTTTGTTGTCTGTATACGCTGATGT
TTAGACGTAATCTTCAGATGTGAAATTTTTCTTTTTGTTTCTGCTTTTTGGCACATAAATTGGA
TATTTCATCTGGATTGGATAAGTACAACAGTGACAAATACATGGAATAGTAAAGAAGACCTTGC
TCTTGAATCCAAGGAACTTGGCTAATTCTGGATCTAGCCATATGAAAACTTCAAAATAAATATG
GGTAGCTGACTTCAAGTAACTCTATGTCAAATAGTCATAGGTTAAGTATCTTCAAAGAACTTGG
ATATTTCAGAGGATACAAAATAAAAAAACAAACTGGAAAACATAAAGCTTATAGAGAAAAAATC
AACACCTTCCTGTGCAGTCCCCTTGGAATTTTCATCATTGAATTTTGAGAAGCATTCTGAAAAT
TTTTCATGGACAGAAAATCGTTATGATGTGAGTCGTCGACGACACAATTCTTCAGATGGCTTTG
ATTCTGGTATTGGACGTCCTAATGGAGCCATCTTTAAATCCTGAATATGAGAGAGAACCAAATC
AGAATAAATCTTTAGCTGCGGGCGTATGGGGCCTACACGCCCAGACACACACATACCCAACCAA
AAAAATCTCCCAAGCTCCTCTCTTAGAATATCCCCCGAATCCTAAATCTAGAACTCCAAGAATG
CTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGGATTCCCAGTAGCAGGAAACC
TCCAGTCACAACCAGTTAAGAATGGAACTGGTCCGAGTGTTTATAAAGGCTTAGTCCCCAAACC
TGCTGTTCCACCTACAAAACCTACACAATGGAAAAGCCAAACTAAAGAAAACAAAGTTGGAACT
TCTTTTCCTCATGAATCTACATATGGTGTTGGCAACTTTAATACTTTTAAGTCAACGGCCAAGA
ATATTAGCCCATCAACAAATTCAGTGAAAGAGTGTAATCGTTCAAATTCTTCTTCGCCTGTTGA
CAAACTTAATCAGCAGCCTCGTTTAACTAAACTGACACGAATGCGCAGTGATAAAAAAAGTGAA
TTTTTGAAAGCATTGAAAAGGGACAGAGTAGAAGAGGAGCATGAAGATGAAAGCCATGCTGGCT
CAGAGAAGGATGACGACTCATTTAATTTGCATAACAGCAATAGTACTCACCAAGAAAGAGATAT
AAACAGAAACTTTGATGAAAATGAAATCCCACAGGAGAACGGCAATGCCTCGGTGATTTCTCAA
CAGATCATTCGTTCTTCGACTTTTCCACAAACTGATGTTCTTTCCAGTTCACTTGAGGCAGAAC
ACAGATTATTAAAAGAGATGGGCTGGCAGGAAGACAGTGAAAATGATGAAACATGTGCTCCCTT
AACTGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAGTTACAGAAGAATGGTCTGAGA
AAAAATGGTATTTTGAAAAACGGCCTGATCTGTGACTTCAAGTTTGGACCCTGGAAAAACAGCA
CTTTCAAACCCACAATTGAGAATGATGACACAGAGACAAGTAGCAGTGACACATCAGATGATGA
CGATGTGTGAAGGATTTCCTCACAGCTTTAGAAATTTTAGTGTGATACATCTCTCATGCAGTTT
GGGGTGAATTGTAAAAATGAAGAACTATAATTTATGTAGTGAACCTACCCCATTAGAAGATGAT
TTTTTTGGGGGACTTCAATATGAAGAAAACCAAGAATGTTGTGTTGGGCTGTGTTGAACATTAT
TTCTTTGTAAATGAATGTTGTAGAAATGAGGACTTTGGTTGATCCAACATTGACTTTCTTCATC
ACTGCAGCATTTCTCTTGACTAGCAATGTGACGATGTAACAAATGAGATTTTCTCATTTAATAA
TAAAAAATTGTGTAATGTTTTGCAAAGCTTCTGTCTTAAAATGTTCAGGTCTTAAGGTACAAGG
CAGCTTCCAGTTTTGCTTGCAGAGTCCTCTCTTTTTCCAACAGTGGAAATCTTCAACTCTACTT
TGTGCACCTCCTCACCCCACTTCCCCCTAAAACAAAGCAACAGCAAAAAGGAAAATGTAGCATG
TTGGCTAAAACTGGAGCAAAGTGCACTAAAACATTAACTTCTTGAACTCAACTCTTGTACTAAG
CAAGTCACCTTTCAGAACAAATTTCTCTTTAGTCTTTCGTAGTGCAGTGAGTGCGAGAGAGGAG
ACGTGCCGGGCGTTCTTCCAAGCTTTAGGAGGTGCTTGTCCAGAGCTTTATTTGGTATACTGTC
AGATCAGGATTTTCAGAGGTGATTGGAAAAGTTGTGGGAAAACTTATTTTGATAAATTATTACA
CATGCAGAAAACCTGATCACTGACTGGATCTGTCCACAACATGGAAAATAAACTGGATTTTCAG
AA

hide sequence

RefSeq Acc Id:

XM_017590710 ⟹ XP_017446199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,824,267 (-)	NCBI
mRatBN7.2	2	43,023,504 - 43,091,146 (-)	NCBI
Rnor_6.0	2	43,002,041 - 43,070,236 (-)	NCBI

Sequence:

show sequence

ACCGGGGCGTGAGCGGTTACTTGGGCCAGAAGGTTCTGTGGTGGAGGCCCTCCTCCTGCTGCCC
CGCCCAGTGGGTTCGTTTGCACGGCTGCTTCTACACCCTTTCTTCCTCCTCTTTCCTCTCGCCC
CGCCTTCCTTCTCTACTTCTCAACCTCTCTGGTTCCTTCCCCCTCCTCGCCACCTTCCACGATC
TCGCGAGACTTGGCCCAGAACATTGCGGATCGGGTCGGCGCCATTTTGGGACTGAGACTGGTTG
TGGGGGAGGGAAAAGCGGCAAAAGGGGATTATTCAAAGTACCGAAAACCTCCTCCCGGGATCGA
GCGCAGCGGCACCCCCAGGCCAGGGGCACCTCTGGTGGGGCAGAAGGTGACTGAGTTTGGCAGA
TATGAAGATCATCATCTAGGTTTTGTTTAAAGGCCCCGGATATTTCAAGTGGCCATTTTGGAAT
TACAGTTTGTTTTTGTTTGGGGTAATTTTGCCCCAGAAGTTTATTAAAATTGGCAAGAATCATC
TCTGAAGTGAATGATAGTAGTGAACAACGAGCTACTTAAAAGACCCAGCCATTTCTTCAGTATT
TTGGTTCAAACGGATTATATAAGTGGTTAAAGTATTTCGTCTGGTGTTAATTTTGTCTCTTCCC
CCTCTCCTGTTGGTGTTCTTCAGCCAAAACTGTAAGATATGTTTGATTTGTGTACTGAGTAGTT
TCAGCAGTTTCAAATTACTGTTTAAATATTGCTGAAGTTTTGTGGCAGTTCTTTTTACCTTTAT
TAAAAGTTTTAGTAATTTTTGACTTCAGCTCTTTTCATATTACAATGGGACAGCTTTTCTAAAT
GAAGACATTGAAAGAATACAGAGTTTTTTTCTTCTTATCTTTTATTTACTTGGGAATGTAAGAT
GTTCCAGTTCCACAGCAGCATGGTAGTGTTGAGATAGCTCTTTGTTGTCTGTATACGCTGATGT
TTAGACGTAATCTTCAGATGTGAAATTTTTCTTTTTGTTTCTGCTTTTTGGCACATAAATTGGA
TATTTCATCTGGATTGGATAAGTACAACAGTGACAAATACATGGAATAGTAAAGAAGACCTTGC
TCTTGAATCCAAGGAACTTGGCTAATTCTGGATCTAGCCATATGAAAACTTCAAAATAAATATG
GGTAGCTGACTTCAAGTAACTCTATGTCAAATAGTCATAGGTTAAGTATCTTCAAAGAACTTGG
ATATTTCAGAGGATACAAAATAAAAAAACAAACTGGAAAACATAAAGCTTATAGAGAAAAAATC
AACACCTTCCTGTGCAGTCCCCTTGGAATTTTCATCATTGAATTTTGAGAAGCATTCTGAAAAT
TTTTCATGGACAGAAAATCGTTATGATGTGAGTCGTCGACGACACAATTCTTCAGATGGCTTTG
ATTCTGGTATTGGACGTCCTAATGGAGCCATCTTTAAATCCTGAATATGAGAGAGAACCAAATC
AGAATAAATCTTTAGCTGCGGGCGTATGGGAATATCCCCCGAATCCTAAATCTAGAACTCCAAG
AATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGGATTCCCAGTAGCAGGA
AACCTCCAGTCACAACCAGTTAAGAATGGAACTGGTCCGAGTGTTTATAAAGGCTTAGTCCCCA
AACCTGCTGTTCCACCTACAAAACCTACACAATGGAAAAGCCAAACTAAAGAAAACAAAGTTGG
AACTTCTTTTCCTCATGAATCTACATATGGTGTTGGCAACTTTAATACTTTTAAGTCAACGGCC
AAGAATATTAGCCCATCAACAAATTCAGTGAAAGAGTGTAATCGTTCAAATTCTTCTTCGCCTG
TTGACAAACTTAATCAGCAGCCTCGTTTAACTAAACTGACACGAATGCGCAGTGATAAAAAAAG
TGAATTTTTGAAAGCATTGAAAAGGGACAGAGTAGAAGAGGAGCATGAAGATGAAAGCCATGCT
GGCTCAGAGAAGGATGACGACTCATTTAATTTGCATAACAGCAATAGTACTCACCAAGAAAGAG
ATATAAACAGAAACTTTGATGAAAATGAAATCCCACAGGAGAACGGCAATGCCTCGGTGATTTC
TCAACAGATCATTCGTTCTTCGACTTTTCCACAAACTGATGTTCTTTCCAGTTCACTTGAGGCA
GAACACAGATTATTAAAAGAGATGGGCTGGCAGGAAGACAGTGAAAATGATGAAACATGTGCTC
CCTTAACTGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAGTTACAGAAGAATGGTCT
GAGAAAAAATGGTATTTTGAAAAACGGCCTGATCTGTGACTTCAAGTTTGGACCCTGGAAAAAC
AGCACTTTCAAACCCACAATTGAGAATGATGACACAGAGACAAGTAGCAGTGACACATCAGATG
ATGACGATGTGTGAAGGATTTCCTCACAGCTTTAGAAATTTTAGTGTGATACATCTCTCATGCA
GTTTGGGGTGAATTGTAAAAATGAAGAACTATAATTTATGTAGTGAACCTACCCCATTAGAAGA
TGATTTTTTTGGGGGACTTCAATATGAAGAAAACCAAGAATGTTGTGTTGGGCTGTGTTGAACA
TTATTTCTTTGTAAATGAATGTTGTAGAAATGAGGACTTTGGTTGATCCAACATTGACTTTCTT
CATCACTGCAGCATTTCTCTTGACTAGCAATGTGACGATGTAACAAATGAGATTTTCTCATTTA
ATAATAAAAAATTGTGTAATGTTTTGCAAAGCTTCTGTCTTAAAATGTTCAGGTCTTAAGGTAC
AAGGCAGCTTCCAGTTTTGCTTGCAGAGTCCTCTCTTTTTCCAACAGTGGAAATCTTCAACTCT
ACTTTGTGCACCTCCTCACCCCACTTCCCCCTAAAACAAAGCAACAGCAAAAAGGAAAATGTAG
CATGTTGGCTAAAACTGGAGCAAAGTGCACTAAAACATTAACTTCTTGAACTCAACTCTTGTAC
TAAGCAAGTCACCTTTCAGAACAAATTTCTCTTTAGTCTTTCGTAGTGCAGTGAGTGCGAGAGA
GGAGACGTGCCGGGCGTTCTTCCAAGCTTTAGGAGGTGCTTGTCCAGAGCTTTATTTGGTATAC
TGTCAGATCAGGATTTTCAGAGGTGATTGGAAAAGTTGTGGGAAAACTTATTTTGATAAATTAT
TACACATGCAGAAAACCTGATCACTGACTGGATCTGTCCACAACATGGAAAATAAACTGGATTT
TCAGAA

hide sequence

RefSeq Acc Id:

XM_039101935 ⟹ XP_038957863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,824,012 (-)	NCBI
mRatBN7.2	2	43,023,504 - 43,090,596 (-)	NCBI

RefSeq Acc Id:

XM_039101936 ⟹ XP_038957864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,801,097 (-)	NCBI
mRatBN7.2	2	43,023,504 - 43,067,744 (-)	NCBI

RefSeq Acc Id:

XM_063281509 ⟹ XP_063137579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,823,991 (-)	NCBI

RefSeq Acc Id:

XM_063281510 ⟹ XP_063137580

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,824,267 (-)	NCBI

RefSeq Acc Id:

XM_063281512 ⟹ XP_063137582

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,823,994 (-)	NCBI

RefSeq Acc Id:

XM_063281513 ⟹ XP_063137583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,756,861 - 44,823,991 (-)	NCBI

RefSeq Acc Id:

XM_063281514 ⟹ XP_063137584

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	44,774,623 - 44,824,267 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099880	(Get FASTA)	NCBI Sequence Viewer
	NP_001395742	(Get FASTA)	NCBI Sequence Viewer
	XP_017446197	(Get FASTA)	NCBI Sequence Viewer
	XP_017446198	(Get FASTA)	NCBI Sequence Viewer
	XP_017446199	(Get FASTA)	NCBI Sequence Viewer
	XP_038957863	(Get FASTA)	NCBI Sequence Viewer
	XP_038957864	(Get FASTA)	NCBI Sequence Viewer
	XP_063137579	(Get FASTA)	NCBI Sequence Viewer
	XP_063137580	(Get FASTA)	NCBI Sequence Viewer
	XP_063137582	(Get FASTA)	NCBI Sequence Viewer
	XP_063137583	(Get FASTA)	NCBI Sequence Viewer
	XP_063137584	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61907	(Get FASTA)	NCBI Sequence Viewer
	AFD32169	(Get FASTA)	NCBI Sequence Viewer
	EDM10337	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038526
	ENSRNOP00000038526.6
	ENSRNOP00000073461
	ENSRNOP00000073461.2

RefSeq Acc Id:	NP_001099880 ⟸ NM_001106410
- Peptide Label:	isoform 1
- UniProtKB:	H9BFG8 (UniProtKB/TrEMBL), F1M562 (UniProtKB/TrEMBL), A6I5M9 (UniProtKB/TrEMBL), A0A0G2K5K6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFSWTENRYDVSRRRHNSSDGFDSGIGRPNGGN FGRKEKNGWRTHGRNGTENINHRGGYHGGNSRSRSSIFHSGKSQGLHENNIPDNETGRKEDKRE RRQFEAEDFPSLNPEYEREPNQNKSLAAGVWGLHAQTHTYPTKKISQAPLLEYPPNPKSRTPRM LVIKKGNTKDLQLSGFPVAGNLQSQPVKNGTGPSVYKGLVPKPAVPPTKPTQWKSQTKENKVGT SFPHESTYGVGNFNTFKSTAKNISPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRSDKKSE FLKALKRDRVEEEHEDESHAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQ QIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLR KNGILKNGLICDFKFGPWKNSTFKPTIENDDTETSSSDTSDDDDV hide sequence

RefSeq Acc Id:

XP_017446199 ⟸ XM_017590710

- Peptide Label:

isoform X4

- Sequence:

show sequence

MALILVLDVLMEPSLNPEYEREPNQNKSLAAGVWEYPPNPKSRTPRMLVIKKGNTKDLQLSGFP
VAGNLQSQPVKNGTGPSVYKGLVPKPAVPPTKPTQWKSQTKENKVGTSFPHESTYGVGNFNTFK
STAKNISPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRSDKKSEFLKALKRDRVEEEHEDE
SHAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSS
LEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGP
WKNSTFKPTIENDDTETSSSDTSDDDDV

hide sequence

RefSeq Acc Id:

XP_017446198 ⟸ XM_017590709

- Peptide Label:

isoform X3

- Sequence:

show sequence

MALILVLDVLMEPSLNPEYEREPNQNKSLAAGVWGLHAQTHTYPTKKISQAPLLEYPPNPKSRT
PRMLVIKKGNTKDLQLSGFPVAGNLQSQPVKNGTGPSVYKGLVPKPAVPPTKPTQWKSQTKENK
VGTSFPHESTYGVGNFNTFKSTAKNISPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRSDK
KSEFLKALKRDRVEEEHEDESHAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASV
ISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKN
GLRKNGILKNGLICDFKFGPWKNSTFKPTIENDDTETSSSDTSDDDDV

hide sequence

RefSeq Acc Id:	XP_017446197 ⟸ XM_017590708
- Peptide Label:	isoform X1
- UniProtKB:	H9BFG8 (UniProtKB/TrEMBL), F1M562 (UniProtKB/TrEMBL), A6I5M9 (UniProtKB/TrEMBL), A0A0G2K5K6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFSWTENRYDVSRRRHNSSDGFDSGIGRPNGGN FGRKEKNGWRTHGRNGTENINHRGGYHGGNSRSRSSIFHSGKSQGLHENNIPDNETGRKEDKRE RRQFEAEDFPSLNPEYEREPNQNKSLAAGVWGLHAQTHTYPTKKISQAPLLEYPPNPKSRTPRM LVIKKGNTKDLQLSGFPVAGNLQSQPVKNGTGPSVYKGLVPKPAVPPTKPTQWKSQTKENKVGT SFPHESTYGVGNFNTFKSTAKNISPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRSDKKSE FLKALKRDRVEEEHEDESHAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQ QIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLR KNGILKNGLICDFKFGPWKNSTFKPTIENDDTETSSSDTSDDDDV hide sequence

Ensembl Acc Id:

ENSRNOP00000038526 ⟸ ENSRNOT00000036658

Ensembl Acc Id:

ENSRNOP00000073461 ⟸ ENSRNOT00000090616

RefSeq Acc Id:	XP_038957863 ⟸ XM_039101935
- Peptide Label:	isoform X1
- UniProtKB:	F1M562 (UniProtKB/TrEMBL), A6I5M9 (UniProtKB/TrEMBL), H9BFG8 (UniProtKB/TrEMBL), A0A0G2K5K6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038957864 ⟸ XM_039101936
- Peptide Label:	isoform X3

RefSeq Acc Id:	NP_001395742 ⟸ NM_001408813
- Peptide Label:	isoform 2
- UniProtKB:	B1WBV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137580 ⟸ XM_063281510
- Peptide Label:	isoform X2
- UniProtKB:	B1WBV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137582 ⟸ XM_063281512
- Peptide Label:	isoform X2
- UniProtKB:	B1WBV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137583 ⟸ XM_063281513
- Peptide Label:	isoform X2
- UniProtKB:	B1WBV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137579 ⟸ XM_063281509
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K5K6 (UniProtKB/TrEMBL), A6I5M9 (UniProtKB/TrEMBL), F1M562 (UniProtKB/TrEMBL), H9BFG8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137584 ⟸ XM_063281514
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-H9BFG8-F1-model_v2	AlphaFold	H9BFG8	1-493	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305492	AgrOrtholog
BioCyc Gene	G2FUF-54424	BioCyc
Ensembl Genes	ENSRNOG00000013002	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000036658	ENTREZGENE
	ENSRNOT00000036658.8	UniProtKB/TrEMBL
	ENSRNOT00000090616	ENTREZGENE
	ENSRNOT00000090616.3	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8367604	IMAGE-MGC_LOAD
InterPro	Vasculin_fam	UniProtKB/TrEMBL
KEGG Report	rno:294734	UniProtKB/TrEMBL
MGC_CLONE	MGC:187630	IMAGE-MGC_LOAD
NCBI Gene	294734	ENTREZGENE
PANTHER	PTHR14339	UniProtKB/TrEMBL
	VASCULIN	UniProtKB/TrEMBL
Pfam	Vasculin	UniProtKB/TrEMBL
PhenoGen	Gpbp1	PhenoGen
RatGTEx	ENSRNOG00000013002	RatGTEx
UniProt	A0A0G2K5K6	ENTREZGENE, UniProtKB/TrEMBL
	A6I5M9	ENTREZGENE, UniProtKB/TrEMBL
	B1WBV9	ENTREZGENE, UniProtKB/TrEMBL
	F1M562	ENTREZGENE
	H9BFG8	ENTREZGENE
UniProt Secondary	F1M562	UniProtKB/TrEMBL
	H9BFG8	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Gpbp1	GC-rich promoter binding protein 1	RGD1305492_predicted	similar to RIKEN cDNA 1700034P14 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1305492_predicted	similar to RIKEN cDNA 1700034P14 (predicted)	LOC294734_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC294734_predicted	similar to RIKEN cDNA 1700034P14 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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