Fam98a (family with sequence similarity 98, member A) - Rat Genome Database

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Gene: Fam98a (family with sequence similarity 98, member A) Rattus norvegicus
Analyze
Symbol: Fam98a
Name: family with sequence similarity 98, member A
RGD ID: 1305486
Description: Predicted to enable protein methyltransferase activity. Predicted to be involved in several processes, including lysosome localization; positive regulation of ruffle assembly; and protein methylation. Predicted to be part of tRNA-splicing ligase complex. Orthologous to human FAM98A (family with sequence similarity 98 member A); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313873; MGC106015; RGD1305486; similar to RIKEN cDNA 2810405J04
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8625,626,108 - 25,640,767 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl625,625,984 - 25,640,767 (+)EnsemblGRCr8
mRatBN7.2619,874,082 - 19,888,744 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl619,874,071 - 19,888,742 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx620,204,274 - 20,218,932 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0620,520,109 - 20,534,772 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0620,000,542 - 20,015,205 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0621,051,327 - 21,065,986 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl621,051,327 - 21,065,986 (+)Ensemblrn6Rnor6.0
Rnor_5.0630,945,057 - 30,959,716 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4619,787,146 - 19,801,805 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera619,443,061 - 19,457,708 (+)NCBICelera
RGSC_v3.1619,790,098 - 19,804,756 (+)NCBI
Cytogenetic Map6q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,4,6-tribromophenol  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
actinomycin D  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
buspirone  (EXP)
carbon nanotube  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
isobutanol  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N(4)-hydroxycytidine  (ISO)
N-ethyl-N-nitrosourea  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:22658674   PMID:22681889   PMID:27777970   PMID:28040436   PMID:28755400  


Genomics

Comparative Map Data
Fam98a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8625,626,108 - 25,640,767 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl625,625,984 - 25,640,767 (+)EnsemblGRCr8
mRatBN7.2619,874,082 - 19,888,744 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl619,874,071 - 19,888,742 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx620,204,274 - 20,218,932 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0620,520,109 - 20,534,772 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0620,000,542 - 20,015,205 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0621,051,327 - 21,065,986 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl621,051,327 - 21,065,986 (+)Ensemblrn6Rnor6.0
Rnor_5.0630,945,057 - 30,959,716 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4619,787,146 - 19,801,805 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera619,443,061 - 19,457,708 (+)NCBICelera
RGSC_v3.1619,790,098 - 19,804,756 (+)NCBI
Cytogenetic Map6q12NCBI
FAM98A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38233,583,660 - 33,599,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl233,532,744 - 33,599,347 (-)Ensemblhg38GRCh38
GRCh37233,808,727 - 33,824,366 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36233,662,233 - 33,677,866 (-)NCBIBuild 36Build 36hg18NCBI36
Celera233,647,433 - 33,663,066 (-)NCBICelera
Cytogenetic Map2p22.3NCBI
HuRef233,542,677 - 33,558,311 (-)NCBIHuRef
CHM1_1233,738,047 - 33,753,682 (-)NCBICHM1_1
T2T-CHM13v2.0233,629,816 - 33,645,413 (-)NCBIT2T-CHM13v2.0
Fam98a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391775,844,080 - 75,858,941 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1775,844,081 - 75,858,941 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381775,537,085 - 75,551,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1775,537,086 - 75,551,946 (-)Ensemblmm10GRCm38
MGSCv371775,936,426 - 75,951,286 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361775,442,151 - 75,456,903 (-)NCBIMGSCv36mm8
Celera1779,829,748 - 79,844,400 (-)NCBICelera
Cytogenetic Map17E2NCBI
cM Map1746.62NCBI
Fam98a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554411,799,453 - 1,814,652 (-)Ensembl
ChiLan1.0NW_0049554411,799,453 - 1,814,096 (-)NCBIChiLan1.0ChiLan1.0
FAM98A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21292,903,075 - 92,918,717 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A92,907,047 - 92,922,689 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A33,591,783 - 33,607,386 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A34,303,009 - 34,318,627 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A34,303,009 - 34,318,627 (-)EnsemblpanPan2panpan1.1
FAM98A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11726,671,254 - 26,687,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1726,671,948 - 26,688,447 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1726,463,930 - 26,479,926 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01727,240,776 - 27,256,783 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1727,240,780 - 27,256,742 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11726,536,375 - 26,552,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01726,610,259 - 26,626,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01726,766,760 - 26,782,758 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam98a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629270,747,061 - 70,761,936 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649377,815 - 90,702 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649377,729 - 92,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM98A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3106,061,572 - 106,081,174 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13106,061,567 - 106,081,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23112,931,682 - 112,949,328 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM98A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11473,861,331 - 73,877,277 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604538,134,240 - 38,149,846 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam98a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473815,251,594 - 15,266,696 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473815,251,594 - 15,266,508 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam98a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1717,744,843 - 17,759,423 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam98a
121 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:98
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000052131
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat
8693645Alc31Alcohol consumption QTL 313.70.038drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)62328466429732046Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)62228825727729050Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)62228825732981219Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat

Markers in Region
UniSTS:237698  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2619,888,327 - 19,888,552 (+)MAPPERmRatBN7.2
Rnor_6.0621,065,572 - 21,065,796NCBIRnor6.0
Rnor_5.0630,959,302 - 30,959,526UniSTSRnor5.0
RGSC_v3.4619,801,391 - 19,801,615UniSTSRGSC3.4
Celera619,457,294 - 19,457,518UniSTS
Cytogenetic Map6q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000052131   ⟹   ENSRNOP00000042004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl625,625,984 - 25,640,753 (+)Ensembl
mRatBN7.2 Ensembl619,874,071 - 19,888,742 (+)Ensembl
Rnor_6.0 Ensembl621,051,327 - 21,065,986 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103454   ⟹   ENSRNOP00000094233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl625,629,979 - 25,640,767 (+)Ensembl
mRatBN7.2 Ensembl619,877,953 - 19,888,742 (+)Ensembl
RefSeq Acc Id: NM_001014073   ⟹   NP_001014095
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8625,626,108 - 25,640,767 (+)NCBI
mRatBN7.2619,874,082 - 19,888,742 (+)NCBI
Rnor_6.0621,051,327 - 21,065,986 (+)NCBI
Rnor_5.0630,945,057 - 30,959,716 (+)NCBI
RGSC_v3.4619,787,146 - 19,801,805 (+)RGD
Celera619,443,061 - 19,457,708 (+)RGD
Sequence:
RefSeq Acc Id: XM_039112160   ⟹   XP_038968088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8625,633,040 - 25,640,767 (+)NCBI
mRatBN7.2619,881,014 - 19,888,744 (+)NCBI
RefSeq Acc Id: XM_063261850   ⟹   XP_063117920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8625,630,056 - 25,640,767 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001014095 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968088 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117920 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89217 (Get FASTA)   NCBI Sequence Viewer  
  EDM02824 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042004
GenBank Protein Q5FWT1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001014095   ⟸   NM_001014073
- UniProtKB: Q5FWT1 (UniProtKB/Swiss-Prot),   A6H9W9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042004   ⟸   ENSRNOT00000052131
RefSeq Acc Id: XP_038968088   ⟸   XM_039112160
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000094233   ⟸   ENSRNOT00000103454
RefSeq Acc Id: XP_063117920   ⟸   XM_063261850
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AJ42 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FWT1-F1-model_v2 AlphaFold Q5FWT1 1-515 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694405
Promoter ID:EPDNEW_R4930
Type:initiation region
Name:Fam98a_1
Description:family with sequence similarity 98, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0621,051,327 - 21,051,387EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305486 AgrOrtholog
BioCyc Gene G2FUF-38464 BioCyc
Ensembl Genes ENSRNOG00000030328 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000052131 ENTREZGENE
IMAGE_CLONE IMAGE:7304253 IMAGE-MGC_LOAD
InterPro FAM98 UniProtKB/Swiss-Prot
KEGG Report rno:313873 UniProtKB/Swiss-Prot
MGC_CLONE MGC:106015 IMAGE-MGC_LOAD
NCBI Gene 313873 ENTREZGENE
PANTHER PROTEIN FAM98A UniProtKB/Swiss-Prot
  PTHR31353 UniProtKB/Swiss-Prot
Pfam DUF2465 UniProtKB/Swiss-Prot
PhenoGen Fam98a PhenoGen
RatGTEx ENSRNOG00000030328 RatGTEx
UniProt A0A8I6AJ42 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QLB8_RAT UniProtKB/TrEMBL
  A6H9W9 ENTREZGENE, UniProtKB/TrEMBL
  FA98A_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Fam98a  family with sequence similarity 98, member A  RGD1305486  similar to RIKEN cDNA 2810405J04  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305486  similar to RIKEN cDNA 2810405J04  RGD1305486_predicted  similar to RIKEN cDNA 2810405J04 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305486_predicted  similar to RIKEN cDNA 2810405J04 (predicted)  LOC313873_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC313873_predicted  similar to RIKEN cDNA 2810405J04 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL