Sfr1 (SWI5-dependent homologous recombination repair protein 1) - Rat Genome Database

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Gene: Sfr1 (SWI5-dependent homologous recombination repair protein 1) Rattus norvegicus
Analyze
Symbol: Sfr1
Name: SWI5-dependent homologous recombination repair protein 1
RGD ID: 1305481
Description: Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in cellular response to estrogen stimulus; double-strand break repair via homologous recombination; and positive regulation of DNA-templated transcription. Predicted to be located in centrosome; nucleolus; and nucleoplasm. Predicted to be part of Swi5-Sfr1 complex. Orthologous to human SFR1 (SWI5 dependent homologous recombination repair protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical LOC294030; hypothetical protein LOC294030; liver regeneration-related protein LRRGT00030; LOC294030; LRRGT00030; MEI5 meiotic recombination protein homolog; MEI5 meiotic recombination protein homolog (S. cerevisiae); MEI5 recombination repair protein homolog; MEI5 recombination repair protein homolog (S. cerevisiae); meiosis protein 5 homolog; Meir5; RGD1305481; swi5-dependent recombination DNA repair protein 1 homolog; SWI5-dependent recombination repair 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81256,560,533 - 256,564,547 (+)NCBIGRCr8
mRatBN7.21246,619,235 - 246,623,250 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,597,044 - 246,623,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1254,746,330 - 254,750,334 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01261,439,672 - 261,443,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01254,088,794 - 254,092,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01267,505,336 - 267,509,350 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1267,483,145 - 267,509,350 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,938,291 - 274,942,306 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41253,079,656 - 253,105,342 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11253,366,620 - 253,370,582 (+)NCBI
Celera1242,385,631 - 242,389,686 (+)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO,ISS)
Swi5-Sfr1 complex  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20976249   PMID:21252223   PMID:23874500  


Genomics

Comparative Map Data
Sfr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81256,560,533 - 256,564,547 (+)NCBIGRCr8
mRatBN7.21246,619,235 - 246,623,250 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,597,044 - 246,623,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1254,746,330 - 254,750,334 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01261,439,672 - 261,443,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01254,088,794 - 254,092,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01267,505,336 - 267,509,350 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1267,483,145 - 267,509,350 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01274,938,291 - 274,942,306 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41253,079,656 - 253,105,342 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11253,366,620 - 253,370,582 (+)NCBI
Celera1242,385,631 - 242,389,686 (+)NCBICelera
Cytogenetic Map1q54NCBI
SFR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810104,120,166 - 104,126,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10104,122,058 - 104,126,385 (+)EnsemblGRCh38hg38GRCh38
GRCh3710105,879,924 - 105,886,141 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610105,871,806 - 105,876,133 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410105,871,805 - 105,876,132NCBI
Celera1099,622,685 - 99,627,012 (+)NCBICelera
Cytogenetic Map10q25.1NCBI
HuRef1099,513,597 - 99,517,924 (+)NCBIHuRef
CHM1_110106,165,698 - 106,170,024 (+)NCBICHM1_1
T2T-CHM13v2.010105,008,277 - 105,014,494 (+)NCBIT2T-CHM13v2.0
Sfr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,720,159 - 47,724,027 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,720,121 - 47,724,027 (+)EnsemblGRCm39 Ensembl
GRCm381947,731,714 - 47,735,588 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,731,682 - 47,735,588 (+)EnsemblGRCm38mm10GRCm38
MGSCv371947,806,246 - 47,810,078 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361947,785,070 - 47,788,810 (+)NCBIMGSCv36mm8
Celera1948,494,121 - 48,497,030 (+)NCBICelera
Cytogenetic Map19D1NCBI
cM Map1940.41NCBI
Sfr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554856,521,292 - 6,524,524 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554856,520,747 - 6,525,359 (-)NCBIChiLan1.0ChiLan1.0
SFR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28115,997,554 - 116,012,885 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110116,002,862 - 116,018,217 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010100,721,780 - 100,726,204 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110104,180,532 - 104,184,880 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10104,180,672 - 104,184,880 (+)Ensemblpanpan1.1panPan2
SFR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12816,436,261 - 16,440,219 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2816,436,377 - 16,439,742 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2816,608,887 - 16,612,835 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02816,914,485 - 16,918,426 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2816,908,735 - 16,918,147 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12816,462,577 - 16,466,513 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02816,491,067 - 16,495,007 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02816,629,806 - 16,633,747 (+)NCBIUU_Cfam_GSD_1.0
Sfr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721330,432,852 - 30,445,933 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366002,041,170 - 2,049,357 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366002,034,023 - 2,049,131 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14115,065,057 - 115,073,855 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114115,064,955 - 115,073,856 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214124,982,636 - 124,986,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SFR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1997,171,948 - 97,176,232 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl997,172,037 - 97,176,369 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604858,288,755 - 58,293,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sfr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248313,218,095 - 3,231,870 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sfr1
34 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:46
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000016881
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1245907761257976495Rat

Markers in Region
RH134383  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21246,622,927 - 246,623,144 (+)MAPPERmRatBN7.2
Rnor_6.01267,509,028 - 267,509,244NCBIRnor6.0
Rnor_5.01274,941,984 - 274,942,200UniSTSRnor5.0
RGSC_v3.41253,105,539 - 253,105,755UniSTSRGSC3.4
Celera1242,389,364 - 242,389,580UniSTS
RH 3.4 Map11623.63UniSTS
Cytogenetic Map1q54UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 39 11 8
Low 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000016881   ⟹   ENSRNOP00000016881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1246,619,137 - 246,623,219 (+)Ensembl
Rnor_6.0 Ensembl1267,505,336 - 267,509,350 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088962   ⟹   ENSRNOP00000068947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1246,597,044 - 246,623,250 (+)Ensembl
Rnor_6.0 Ensembl1267,483,145 - 267,508,831 (+)Ensembl
RefSeq Acc Id: NM_001047856   ⟹   NP_001041321
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81256,560,533 - 256,564,547 (+)NCBI
mRatBN7.21246,619,235 - 246,623,250 (+)NCBI
Rnor_6.01267,505,336 - 267,509,350 (+)NCBI
Rnor_5.01274,938,291 - 274,942,306 (+)NCBI
RGSC_v3.41253,079,656 - 253,105,342 (+)RGD
Celera1242,385,631 - 242,389,686 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001041321 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAQ96243 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016881
  ENSRNOP00000016881.4
  ENSRNOP00000068947.1
GenBank Protein Q6TXG9 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001041321   ⟸   NM_001047856
- UniProtKB: A0A0H2UHK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016881   ⟸   ENSRNOT00000016881
RefSeq Acc Id: ENSRNOP00000068947   ⟸   ENSRNOT00000088962

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6TXG9-F1-model_v2 AlphaFold Q6TXG9 1-251 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690980
Promoter ID:EPDNEW_R1505
Type:initiation region
Name:Sfr1_1
Description:SWI5-dependent homologous recombination repair protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01267,505,350 - 267,505,410EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305481 AgrOrtholog
BioCyc Gene G2FUF-55465 BioCyc
Ensembl Genes ENSRNOG00000012641 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016881 ENTREZGENE
  ENSRNOT00000016881.6 UniProtKB/TrEMBL
  ENSRNOT00000088962.2 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.1020 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SFR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SFR1/Mei5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:294030 UniProtKB/TrEMBL
NCBI Gene 294030 ENTREZGENE
PANTHER PTHR28643 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWI5-DEPENDENT RECOMBINATION DNA REPAIR PROTEIN 1 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mei5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sfr1 PhenoGen
RatGTEx ENSRNOG00000012641 RatGTEx
UniProt A0A0H2UHK0 ENTREZGENE, UniProtKB/TrEMBL
  Q6TXG9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-09 Sfr1  SWI5-dependent homologous recombination repair protein 1  Sfr1  SWI5-dependent recombination repair 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-09-02 Sfr1  SWI5-dependent recombination repair 1  Meir5  MEI5 recombination repair protein homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-16 Meir5  MEI5 recombination repair protein homolog (S. cerevisiae)  Meir5  MEI5 meiotic recombination protein homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Meir5  MEI5 meiotic recombination protein homolog (S. cerevisiae)  RGD1305481  hypothetical LOC294030  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305481  hypothetical LOC294030  RGD1305481_predicted  hypothetical LOC294030 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305481_predicted  hypothetical LOC294030 (predicted)  LOC294030_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294030_predicted  hypothetical LOC294030 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL