Ikbip (IKBKB interacting protein) - Rat Genome Database

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Gene: Ikbip (IKBKB interacting protein) Rattus norvegicus
Analyze
Symbol: Ikbip
Name: IKBKB interacting protein
RGD ID: 1305457
Description: Predicted to be located in endoplasmic reticulum and nucleolus. Orthologous to human IKBIP (IKBKB interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: i kappa-B kinase interacting protein; i kappa-B kinase-interacting protein; IKBKB-interacting protein; IKIP; IKK interacting protein; IKK-interacting protein; inhibitor of nuclear factor kappa-B kinase-interacting protein; LOC314730; MGC108928; RGD1305457; similar to RIKEN cDNA 1700023M03
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8727,467,097 - 27,485,776 (+)NCBIGRCr8
mRatBN7.2725,579,865 - 25,598,548 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl725,579,832 - 25,605,162 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx727,574,362 - 27,585,633 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0729,736,749 - 29,748,020 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0729,514,157 - 29,525,428 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0731,784,390 - 31,803,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl731,784,438 - 31,803,194 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0731,873,199 - 31,891,990 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4728,020,915 - 28,032,829 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1728,041,112 - 28,060,446 (+)NCBI
Celera722,706,680 - 22,717,951 (+)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
butan-1-ol  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
diazinon  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fragrance  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
iron dichloride  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
theophylline  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. A highly conserved proapoptotic gene, IKIP, located next to the APAF1 gene locus, is regulated by p53. Hofer-Warbinek R, etal., Cell Death Differ. 2004 Dec;11(12):1317-25.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888   PMID:22871113  


Genomics

Comparative Map Data
Ikbip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8727,467,097 - 27,485,776 (+)NCBIGRCr8
mRatBN7.2725,579,865 - 25,598,548 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl725,579,832 - 25,605,162 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx727,574,362 - 27,585,633 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0729,736,749 - 29,748,020 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0729,514,157 - 29,525,428 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0731,784,390 - 31,803,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl731,784,438 - 31,803,194 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0731,873,199 - 31,891,990 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4728,020,915 - 28,032,829 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1728,041,112 - 28,060,446 (+)NCBI
Celera722,706,680 - 22,717,951 (+)NCBICelera
Cytogenetic Map7q13NCBI
IKBIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381298,613,404 - 98,644,788 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1298,613,405 - 98,645,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371299,007,182 - 99,038,566 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361297,531,313 - 97,562,720 (-)NCBINCBI36Build 36hg18NCBI36
Celera1298,672,181 - 98,703,485 (-)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1296,068,349 - 96,099,780 (-)NCBIHuRef
CHM1_11298,972,181 - 99,003,775 (-)NCBICHM1_1
T2T-CHM13v2.01298,586,371 - 98,617,716 (-)NCBIT2T-CHM13v2.0
Ikbip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391090,918,667 - 90,938,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1090,918,802 - 90,938,469 (+)EnsemblGRCm39 Ensembl
GRCm381091,082,737 - 91,102,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1091,082,940 - 91,102,607 (+)EnsemblGRCm38mm10GRCm38
MGSCv371090,545,784 - 90,565,358 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361090,512,870 - 90,532,406 (+)NCBIMGSCv36mm8
Celera1083,655,137 - 83,664,148 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1045.54NCBI
Ikbip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540534,600,484 - 34,620,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540534,600,211 - 34,619,614 (-)NCBIChiLan1.0ChiLan1.0
IKBIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210106,676,687 - 106,707,957 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112106,673,076 - 106,704,353 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01296,193,050 - 96,224,291 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11299,607,844 - 99,637,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1299,607,844 - 99,637,527 (-)Ensemblpanpan1.1panPan2
IKBIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11538,005,830 - 38,026,715 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1538,006,546 - 38,026,663 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1538,387,551 - 38,408,142 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01538,669,259 - 38,689,847 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1538,669,974 - 38,689,807 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11537,941,134 - 37,961,765 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01538,033,817 - 38,054,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01538,307,501 - 38,328,089 (-)NCBIUU_Cfam_GSD_1.0
Ikbip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494521,892,417 - 21,914,722 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649214,902,825 - 14,920,739 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649214,902,831 - 14,925,838 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IKBIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl585,258,459 - 85,278,232 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1585,258,455 - 85,278,235 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2589,581,184 - 89,601,165 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IKBIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11193,912,102 - 93,941,952 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1193,911,816 - 93,941,945 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037151,120,951 - 151,151,214 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ikbip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247508,941,370 - 8,961,713 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ikbip
168 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:199
Interacting mature miRNAs:222
Transcripts:ENSRNOT00000010914, ENSRNOT00000010929
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat

Markers in Region
RH142330  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2725,598,372 - 25,598,538 (+)MAPPERmRatBN7.2
Rnor_6.0731,803,025 - 31,803,190NCBIRnor6.0
Rnor_5.0731,891,815 - 31,891,980UniSTSRnor5.0
RGSC_v3.4728,040,006 - 28,040,171UniSTSRGSC3.4
Celera722,725,124 - 22,725,289UniSTS
RH 3.4 Map7154.6UniSTS
Cytogenetic Map7q13UniSTS
RH142031  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2725,598,083 - 25,598,296 (+)MAPPERmRatBN7.2
Rnor_6.0731,802,736 - 31,802,948NCBIRnor6.0
Rnor_5.0731,891,526 - 31,891,738UniSTSRnor5.0
RGSC_v3.4728,039,717 - 28,039,929UniSTSRGSC3.4
Celera722,724,835 - 22,725,047UniSTS
RH 3.4 Map7154.1UniSTS
Cytogenetic Map7q13UniSTS
AI412926  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2725,596,842 - 25,596,956 (+)MAPPERmRatBN7.2
Rnor_6.0731,801,495 - 31,801,608NCBIRnor6.0
Rnor_5.0731,890,287 - 31,890,400UniSTSRnor5.0
RGSC_v3.4728,038,479 - 28,038,592UniSTSRGSC3.4
Celera722,723,594 - 22,723,707UniSTS
RH 3.4 Map7154.4UniSTS
Cytogenetic Map7q13UniSTS
AA850420  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2725,592,933 - 25,593,048 (+)MAPPERmRatBN7.2
Rnor_6.0731,797,586 - 31,797,700NCBIRnor6.0
Rnor_5.0731,886,378 - 31,886,492UniSTSRnor5.0
RGSC_v3.4728,034,570 - 28,034,684UniSTSRGSC3.4
Celera722,719,692 - 22,719,806UniSTS
RH 3.4 Map7154.6UniSTS
Cytogenetic Map7q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 32 19 14 12 14 3 3 59 26 34 11 3
Low 3 11 38 27 7 27 5 8 15 9 7 5
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000010914   ⟹   ENSRNOP00000010913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl725,579,846 - 25,605,162 (+)Ensembl
Rnor_6.0 Ensembl731,784,438 - 31,796,041 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000010929   ⟹   ENSRNOP00000010929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl725,579,832 - 25,598,542 (+)Ensembl
Rnor_6.0 Ensembl731,784,501 - 31,803,194 (+)Ensembl
RefSeq Acc Id: NM_001009430   ⟹   NP_001009430
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8727,467,097 - 27,480,338 (+)NCBI
mRatBN7.2725,579,865 - 25,593,110 (+)NCBI
Rnor_6.0731,784,574 - 31,795,845 (+)NCBI
Rnor_5.0731,873,199 - 31,891,990 (+)NCBI
RGSC_v3.4728,020,915 - 28,032,829 (+)RGD
Celera722,706,680 - 22,717,951 (+)RGD
Sequence:
RefSeq Acc Id: NM_001412605   ⟹   NP_001399534
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8727,467,097 - 27,485,776 (+)NCBI
mRatBN7.2725,579,865 - 25,598,548 (+)NCBI
RefSeq Acc Id: NP_001009430   ⟸   NM_001009430
- Peptide Label: isoform 1
- UniProtKB: Q5M859 (UniProtKB/Swiss-Prot),   Q5EAJ6 (UniProtKB/Swiss-Prot),   A6IFV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010913   ⟸   ENSRNOT00000010914
RefSeq Acc Id: ENSRNOP00000010929   ⟸   ENSRNOT00000010929
RefSeq Acc Id: NP_001399534   ⟸   NM_001412605
- Peptide Label: isoform 2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5EAJ6-F1-model_v2 AlphaFold Q5EAJ6 1-373 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695149
Promoter ID:EPDNEW_R5665
Type:initiation region
Name:Ikbip_1
Description:IKBKB interacting protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0731,784,534 - 31,784,594EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305457 AgrOrtholog
BioCyc Gene G2FUF-34468 BioCyc
Ensembl Genes ENSRNOG00000008247 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055021834 UniProtKB/Swiss-Prot
  ENSRNOG00060021696 UniProtKB/Swiss-Prot
  ENSRNOG00065023001 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010914 ENTREZGENE
  ENSRNOT00000010914.5 UniProtKB/Swiss-Prot
  ENSRNOT00000010929 ENTREZGENE
  ENSRNOT00000010929.5 UniProtKB/Swiss-Prot
  ENSRNOT00055037441 UniProtKB/Swiss-Prot
  ENSRNOT00060037587 UniProtKB/Swiss-Prot
  ENSRNOT00065039321 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7382451 IMAGE-MGC_LOAD
InterPro Inh_kappa-B_kinase-int UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:314730 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108928 IMAGE-MGC_LOAD
NCBI Gene 314730 ENTREZGENE
PANTHER INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE-INTERACTING PROTEIN UniProtKB/Swiss-Prot
  INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE-INTERACTING PROTEIN UniProtKB/TrEMBL
  INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE-INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR21734 UniProtKB/Swiss-Prot
PhenoGen Ikbip PhenoGen
RatGTEx ENSRNOG00000008247 RatGTEx
  ENSRNOG00055021834 RatGTEx
  ENSRNOG00060021696 RatGTEx
  ENSRNOG00065023001 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6IFV0 ENTREZGENE, UniProtKB/TrEMBL
  IKIP_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5M859 ENTREZGENE
UniProt Secondary Q5M859 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-12-02 Ikbip  IKBKB interacting protein  RGD1305457  similar to RIKEN cDNA 1700023M03  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305457  similar to RIKEN cDNA 1700023M03  RGD1305457_predicted  similar to RIKEN cDNA 1700023M03 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305457_predicted  similar to RIKEN cDNA 1700023M03 (predicted)  LOC314730_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314730_predicted  similar to RIKEN cDNA 1700023M03 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL