Gramd1c (GRAM domain containing 1C) - Rat Genome Database

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Gene: Gramd1c (GRAM domain containing 1C) Rattus norvegicus
Analyze
Symbol: Gramd1c
Name: GRAM domain containing 1C
RGD ID: 1305433
Description: Predicted to enable cholesterol binding activity and cholesterol transfer activity. Predicted to be involved in cellular response to cholesterol and intracellular sterol transport. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane; endoplasmic reticulum-plasma membrane contact site; and plasma membrane. Orthologous to human GRAMD1C (GRAM domain containing 1C); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GRAM domain-containing protein 1C; LOC360717; RGD1305433; similar to RIKEN cDNA 4921521N14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,139,076 - 70,224,478 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1170,139,184 - 70,224,478 (+)EnsemblGRCr8
mRatBN7.21156,633,229 - 56,718,570 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,633,227 - 56,718,570 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1165,448,255 - 65,530,038 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01158,110,504 - 58,192,287 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01157,158,938 - 57,240,841 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,609,370 - 61,659,355 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01162,580,983 - 62,634,961 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,605,937 - 62,634,803 (+)Ensemblrn6Rnor6.0
Rnor_5.01160,784,803 - 60,791,455 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01165,711,729 - 65,765,391 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41158,201,167 - 58,283,274 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1156,188,270 - 56,269,944 (+)NCBICelera
RGSC_v3.11158,254,734 - 58,341,104 (+)NCBI
Cytogenetic Map11q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloroethene  (ISO)
cisplatin  (ISO)
clothianidin  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dieldrin  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
flutamide  (EXP)
glyphosate  (EXP)
GSK-J4  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propanal  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
triadimefon  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:30220461  


Genomics

Comparative Map Data
Gramd1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,139,076 - 70,224,478 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1170,139,184 - 70,224,478 (+)EnsemblGRCr8
mRatBN7.21156,633,229 - 56,718,570 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,633,227 - 56,718,570 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1165,448,255 - 65,530,038 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01158,110,504 - 58,192,287 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01157,158,938 - 57,240,841 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,609,370 - 61,659,355 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01162,580,983 - 62,634,961 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,605,937 - 62,634,803 (+)Ensemblrn6Rnor6.0
Rnor_5.01160,784,803 - 60,791,455 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01165,711,729 - 65,765,391 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41158,201,167 - 58,283,274 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1156,188,270 - 56,269,944 (+)NCBICelera
RGSC_v3.11158,254,734 - 58,341,104 (+)NCBI
Cytogenetic Map11q21NCBI
GRAMD1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,828,192 - 113,947,174 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,828,182 - 113,947,179 (+)Ensemblhg38GRCh38
GRCh373113,557,635 - 113,666,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363115,040,367 - 115,148,711 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3111,966,333 - 112,074,472 (+)NCBICelera
Cytogenetic Map3q13.31NCBI
HuRef3110,932,234 - 111,040,020 (+)NCBIHuRef
CHM1_13113,520,993 - 113,629,397 (+)NCBICHM1_1
T2T-CHM13v2.03116,549,379 - 116,668,438 (+)NCBIT2T-CHM13v2.0
Gramd1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391643,800,713 - 43,883,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1643,800,713 - 43,883,708 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381643,980,350 - 44,065,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1643,980,350 - 44,063,345 (-)Ensemblmm10GRCm38
MGSCv371643,980,463 - 44,028,058 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361643,899,687 - 43,935,691 (-)NCBIMGSCv36mm8
Celera1644,335,513 - 44,383,274 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.44NCBI
Gramd1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,957,834 - 14,044,749 (+)Ensembl
ChiLan1.0NW_00495542713,957,746 - 14,044,473 (+)NCBIChiLan1.0ChiLan1.0
GRAMD1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,831,220 - 111,939,389 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13111,836,007 - 111,944,167 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03110,977,513 - 111,085,458 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13117,898,371 - 118,006,502 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,898,371 - 118,006,502 (+)EnsemblpanPan2panpan1.1
GRAMD1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13318,132,860 - 18,214,363 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3318,132,862 - 18,212,894 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3318,234,551 - 18,322,629 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03318,372,480 - 18,460,171 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3318,372,503 - 18,460,152 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13318,176,131 - 18,263,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03318,227,495 - 18,315,338 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,772,807 - 18,860,172 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gramd1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,087,982 - 136,172,184 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365361,349,735 - 1,434,407 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365361,349,832 - 1,433,910 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRAMD1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13145,997,742 - 146,105,681 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113145,997,738 - 146,105,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213155,584,628 - 155,691,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRAMD1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12266,917,212 - 67,021,575 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2266,918,899 - 67,021,409 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604199,447,420 - 99,551,307 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gramd1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473134,571,894 - 34,608,859 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473134,571,191 - 34,680,754 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gramd1c
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1428,873,074 - 28,974,812 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gramd1c
573 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:5
Count of miRNA genes:4
Interacting mature miRNAs:5
Transcripts:ENSRNOT00000002722
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 152 91 90 59 90 59 6 353 190 11 131 80 92 31 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000071065   ⟹   ENSRNOP00000066843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,140,957 - 70,224,476 (+)Ensembl
mRatBN7.2 Ensembl1156,635,036 - 56,718,566 (+)Ensembl
Rnor_6.0 Ensembl1162,584,959 - 62,634,802 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082533   ⟹   ENSRNOP00000073023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,187,740 - 70,224,478 (+)Ensembl
mRatBN7.2 Ensembl1156,681,830 - 56,718,570 (+)Ensembl
Rnor_6.0 Ensembl1161,609,389 - 61,661,057 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088880   ⟹   ENSRNOP00000069253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,139,184 - 70,222,943 (+)Ensembl
mRatBN7.2 Ensembl1156,635,082 - 56,716,871 (+)Ensembl
Rnor_6.0 Ensembl1161,609,370 - 61,659,355 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,581,121 - 62,634,803 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093242   ⟹   ENSRNOP00000076277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,140,887 - 70,224,475 (+)Ensembl
mRatBN7.2 Ensembl1156,633,227 - 56,718,566 (+)Ensembl
Rnor_6.0 Ensembl1161,606,006 - 61,652,180 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093455   ⟹   ENSRNOP00000076134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,140,882 - 70,224,478 (+)Ensembl
mRatBN7.2 Ensembl1156,633,227 - 56,718,566 (+)Ensembl
Rnor_6.0 Ensembl1161,605,937 - 61,660,198 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,140,884 - 70,224,476 (+)Ensembl
mRatBN7.2 Ensembl1156,635,036 - 56,718,566 (+)Ensembl
Rnor_6.0 Ensembl1161,609,388 - 61,655,333 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,140,887 - 70,224,475 (+)Ensembl
Rnor_6.0 Ensembl1161,655,666 - 61,661,054 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156315   ⟹   ENSRNOP00000102522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,140,887 - 70,224,475 (+)Ensembl
RefSeq Acc Id: NM_001191826   ⟹   NP_001178755
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81170,140,930 - 70,224,478 (+)NCBI
mRatBN7.21156,635,020 - 56,718,570 (+)NCBI
Rnor_6.01161,609,370 - 61,659,355 (+)NCBI
Rnor_5.01165,711,729 - 65,765,391 (+)NCBI
Celera1156,188,270 - 56,269,944 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088482   ⟹   XP_038944410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81170,139,076 - 70,224,478 (+)NCBI
mRatBN7.21156,633,229 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088483   ⟹   XP_038944411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81170,140,953 - 70,224,478 (+)NCBI
mRatBN7.21156,635,042 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088484   ⟹   XP_038944412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81170,139,139 - 70,224,478 (+)NCBI
mRatBN7.21156,633,230 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088485   ⟹   XP_038944413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81170,139,139 - 70,224,478 (+)NCBI
mRatBN7.21156,633,229 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_063270638   ⟹   XP_063126708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81170,140,957 - 70,224,478 (+)NCBI
RefSeq Acc Id: NP_001178755   ⟸   NM_001191826
- UniProtKB: A0A8I6AME7 (UniProtKB/TrEMBL),   A6IR16 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073023   ⟸   ENSRNOT00000082533
Ensembl Acc Id: ENSRNOP00000066843   ⟸   ENSRNOT00000071065
Ensembl Acc Id: ENSRNOP00000076134   ⟸   ENSRNOT00000093455
Ensembl Acc Id: ENSRNOP00000076277   ⟸   ENSRNOT00000093242
Ensembl Acc Id: ENSRNOP00000069253   ⟸   ENSRNOT00000088880
RefSeq Acc Id: XP_038944410   ⟸   XM_039088482
- Peptide Label: isoform X1
- UniProtKB: A0A1W2Q6J4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944413   ⟸   XM_039088485
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944412   ⟸   XM_039088484
- Peptide Label: isoform X3
- UniProtKB: A0A1W2Q652 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944411   ⟸   XM_039088483
- Peptide Label: isoform X2
- UniProtKB: A6IR16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126708   ⟸   XM_063270638
- Peptide Label: isoform X5
- UniProtKB: A6IR16 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102522   ⟸   ENSRNOT00000156315
Protein Domains
VASt

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A135-F1-model_v2 AlphaFold D4A135 1-488 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698160
Promoter ID:EPDNEW_R8682
Type:multiple initiation site
Name:Gramd1c_1
Description:GRAM domain containing 1C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01162,581,079 - 62,581,139EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305433 AgrOrtholog
BioCyc Gene G2FUF-21336 BioCyc
Ensembl Genes ENSRNOG00000053406 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071065.4 UniProtKB/TrEMBL
  ENSRNOT00000082533.3 UniProtKB/TrEMBL
  ENSRNOT00000088880 ENTREZGENE
  ENSRNOT00000088880.3 UniProtKB/TrEMBL
  ENSRNOT00000093242 ENTREZGENE
  ENSRNOT00000093242.3 UniProtKB/TrEMBL
  ENSRNOT00000093455.3 UniProtKB/TrEMBL
  ENSRNOT00000093588 ENTREZGENE
  ENSRNOT00000093588.3 UniProtKB/TrEMBL
  ENSRNOT00000093600.3 UniProtKB/TrEMBL
  ENSRNOT00000156315.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro Cholesterol_transport UniProtKB/TrEMBL
  DUF4782 UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
KEGG Report rno:360717 UniProtKB/TrEMBL
NCBI Gene 360717 ENTREZGENE
PANTHER PROTEIN ASTER-C UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF4782 UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
PhenoGen Gramd1c PhenoGen
PROSITE VAST UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053406 RatGTEx
SMART GRAM UniProtKB/TrEMBL
UniProt A0A0G2K4F5_RAT UniProtKB/TrEMBL
  A0A1W2Q652 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q6J4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNR0_RAT UniProtKB/TrEMBL
  A0A8I6AME7 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LGV2_RAT UniProtKB/TrEMBL
  A6IR16 ENTREZGENE, UniProtKB/TrEMBL
  A6IR17_RAT UniProtKB/TrEMBL
  D4A135_RAT UniProtKB/TrEMBL
  M0RBB3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Gramd1c  GRAM domain containing 1C   Gramd1c_predicted  GRAM domain containing 1C (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Gramd1c_predicted  GRAM domain containing 1C (predicted)  RGD1305433_predicted  similar to RIKEN cDNA 4921521N14 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1305433_predicted  similar to RIKEN cDNA 4921521N14 (predicted)  LOC360717_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360717_predicted  similar to RIKEN cDNA 4921521N14 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL