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Gene: Ttc17 (tetratricopeptide repeat domain 17) Rattus norvegicus

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Symbol:

Ttc17

Name:

tetratricopeptide repeat domain 17

RGD ID:

1305410

Description:

Predicted to be involved in actin filament polymerization and cilium organization. Located in cytoplasm. Orthologous to human TTC17 (tetratricopeptide repeat domain 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; furan.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC311224; tetratricopeptide repeat protein 17; TPR repeat protein 17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TTC17 (tetratricopeptide repeat domain 17)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ttc17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ttc17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TTC17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TTC17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ttc17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TTC17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TTC17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ttc17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ttc17 (tetratricopeptide repeat domain 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PCDHB10 (protocadherin beta 10)	HGNC	OMA
Homo sapiens (human):	PCDHB9 (protocadherin beta 9)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TTC17 (tetratricopeptide repeat domain 17)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ttc17 (tetratricopeptide repeat domain 17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ttc17 (tetratricopeptide repeat domain 17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11436	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ttc-17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ttc-17	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ttc17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	100,718,820 - 100,829,464 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	100,718,827 - 100,829,129 (-)	Ensembl				GRCr8
mRatBN7.2	3	80,263,488 - 80,374,137 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	80,263,495 - 80,373,812 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	83,733,246 - 83,843,391 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	92,332,317 - 92,442,459 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	90,181,745 - 90,285,017 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	83,198,829 - 83,306,622 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	83,198,821 - 83,306,781 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	89,898,702 - 90,006,238 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	78,736,486 - 78,815,334 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	79,490,280 - 79,568,165 (-)	NCBI		Celera
RGSC_v3.1	3	78,602,588 - 78,711,776 (-)	NCBI
Cytogenetic Map	3	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

captan (ISO)

CGP 52608 (ISO)

clobetasol (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethyl methanesulfonate (ISO)

folpet (ISO)

formaldehyde (ISO)

furan (EXP)

gentamycin (EXP)

glyphosate (EXP)

indometacin (ISO)

inulin (ISO)

leflunomide (EXP)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

methylparaben (ISO)

mono(2-ethylhexyl) phthalate (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

quercetin (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

Soman (EXP)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament polymerization (IBA,IEA,ISO,ISS)

cell projection organization (IEA)

cilium organization (IBA,IEA,ISO,ISS)

Cellular Component

actin cytoskeleton (IBA,IEA,ISO,ISS)

cytoplasm (IBA,IDA,IEA,ISO)

cytoskeleton (IEA)

plasma membrane (IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human.	Bontems F, etal., PLoS One. 2014 Jan 27;9(1):e86476. doi: 10.1371/journal.pone.0086476. eCollection 2014.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Ttc17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	100,718,820 - 100,829,464 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	100,718,827 - 100,829,129 (-)	Ensembl				GRCr8
mRatBN7.2	3	80,263,488 - 80,374,137 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	80,263,495 - 80,373,812 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	83,733,246 - 83,843,391 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	92,332,317 - 92,442,459 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	90,181,745 - 90,285,017 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	83,198,829 - 83,306,622 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	83,198,821 - 83,306,781 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	89,898,702 - 90,006,238 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	78,736,486 - 78,815,334 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	79,490,280 - 79,568,165 (-)	NCBI		Celera
RGSC_v3.1	3	78,602,588 - 78,711,776 (-)	NCBI
Cytogenetic Map	3	q31	NCBI

TTC17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	43,358,920 - 43,494,931 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	43,358,920 - 43,494,933 (+)	Ensembl			hg38	GRCh38
GRCh37	11	43,380,470 - 43,516,481 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	43,337,067 - 43,472,078 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	43,337,066 - 43,472,069	NCBI
Celera	11	43,527,449 - 43,663,453 (+)	NCBI		Celera
Cytogenetic Map	11	p12-p11.2	NCBI
HuRef	11	43,090,543 - 43,226,576 (+)	NCBI		HuRef
CHM1_1	11	43,380,061 - 43,516,094 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	43,514,345 - 43,650,321 (+)	NCBI		T2T-CHM13v2.0

Ttc17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	94,131,111 - 94,237,034 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	94,131,112 - 94,237,034 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	94,300,766 - 94,406,710 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	94,300,767 - 94,406,689 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	94,140,923 - 94,246,846 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	94,140,923 - 94,246,846 (-)	NCBI		MGSCv36	mm8
Celera	2	95,697,774 - 95,803,320 (-)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI
cM Map	2	51.69	NCBI

Ttc17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	4,019,612 - 4,119,521 (-)	Ensembl
ChiLan1.0	NW_004955422	4,019,755 - 4,119,522 (-)	NCBI	ChiLan1.0	ChiLan1.0

TTC17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	45,566,684 - 45,710,324 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	45,579,217 - 45,718,947 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	43,319,838 - 43,455,647 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	43,800,224 - 43,951,417 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	43,800,293 - 43,952,853 (+)	Ensembl			panPan2	panpan1.1

TTC17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	26,201,423 - 26,317,971 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	26,201,938 - 26,318,230 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	25,891,349 - 26,008,032 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	26,826,116 - 26,942,695 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	26,826,116 - 26,942,679 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	26,335,188 - 26,451,677 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	25,981,818 - 26,098,564 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	26,593,813 - 26,710,370 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ttc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	23,003,869 - 23,111,963 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	5,116,518 - 5,223,571 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	5,115,507 - 5,223,587 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	18,807,530 - 18,954,667 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	18,807,521 - 18,954,667 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	20,604,627 - 20,659,117 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	21,877,626 - 22,021,525 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	21,877,596 - 22,021,456 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	119,113,861 - 119,256,188 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	4,482,095 - 4,589,446 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624767	4,484,259 - 4,589,392 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ttc17
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	68,468,684 - 68,573,802 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ttc17
650 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	137
Count of miRNA genes:	99
Interacting mature miRNAs:	116
Transcripts:	ENSRNOT00000014088
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	73592611	110333156	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

D3Rat36

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	100,822,652 - 100,822,830 (+)	Marker Load Pipeline
mRatBN7.2	3	80,367,329 - 80,367,507 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	83,300,114 - 83,300,291	NCBI	Rnor6.0
Rnor_5.0	3	89,999,731 - 89,999,908	UniSTS	Rnor5.0
RGSC_v3.4	3	78,808,731 - 78,809,051	RGD	RGSC3.4
RGSC_v3.4	3	78,808,864 - 78,809,041	UniSTS	RGSC3.4
Celera	3	79,561,691 - 79,561,868	UniSTS
RGSC_v3.1	3	78,705,292 - 78,705,469	RGD
RH 3.4 Map	3	691.6	UniSTS
RH 3.4 Map	3	691.6	RGD
RH 2.0 Map	3	457.9	RGD
SHRSP x BN Map	3	42.7898	RGD
Cytogenetic Map	3	q31	UniSTS

D3Rat223

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	100,700,362 - 100,700,526 (+)	Marker Load Pipeline
mRatBN7.2	3	80,245,020 - 80,245,184 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	83,180,261 - 83,180,424	NCBI	Rnor6.0
Rnor_5.0	3	89,880,956 - 89,881,119	UniSTS	Rnor5.0
RGSC_v3.4	3	78,691,900 - 78,692,063	UniSTS	RGSC3.4
RGSC_v3.4	3	78,691,899 - 78,692,063	RGD	RGSC3.4
Celera	3	79,445,273 - 79,445,434	UniSTS
RGSC_v3.1	3	78,588,327 - 78,588,491	RGD
SHRSP x BN Map	3	42.7898	UniSTS
SHRSP x BN Map	3	42.7898	RGD
Cytogenetic Map	3	q31	UniSTS

RH131990

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	80,263,412 - 80,263,697 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	80,263,515 - 80,263,697 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	83,198,857 - 83,199,038	NCBI	Rnor6.0
Rnor_6.0	3	83,198,643 - 83,199,038	NCBI	Rnor6.0
Rnor_5.0	3	89,898,730 - 89,898,911	UniSTS	Rnor5.0
Rnor_5.0	3	89,898,516 - 89,898,911	UniSTS	Rnor5.0
RH 3.4 Map	3	705.4	UniSTS
Cytogenetic Map	3	q31	UniSTS

AI169236

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	80,352,297 - 80,352,390 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	83,285,082 - 83,285,174	NCBI	Rnor6.0
Rnor_5.0	3	89,984,699 - 89,984,791	UniSTS	Rnor5.0
RGSC_v3.4	3	78,793,832 - 78,793,924	UniSTS	RGSC3.4
Celera	3	79,546,658 - 79,546,750	UniSTS
RH 3.4 Map	3	690.4	UniSTS
Cytogenetic Map	3	q31	UniSTS

9130020K17Rik

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	80,263,412 - 80,263,729 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	80,263,556 - 80,263,729 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	83,198,684 - 83,199,070	NCBI	Rnor6.0
Rnor_6.0	3	83,198,898 - 83,199,070	NCBI	Rnor6.0
Rnor_5.0	3	89,898,771 - 89,898,943	UniSTS	Rnor5.0
Rnor_5.0	3	89,898,557 - 89,898,943	UniSTS	Rnor5.0
Cytogenetic Map	3	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014088 ⟹ ENSRNOP00000014088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	100,718,827 - 100,829,129 (-)	Ensembl
mRatBN7.2 Ensembl	3	80,263,495 - 80,373,808 (-)	Ensembl
Rnor_6.0 Ensembl	3	83,198,821 - 83,306,781 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099588 ⟹ ENSRNOP00000090386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	100,718,827 - 100,829,129 (-)	Ensembl
mRatBN7.2 Ensembl	3	80,263,495 - 80,373,808 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110475 ⟹ ENSRNOP00000077556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	100,755,343 - 100,829,129 (-)	Ensembl
mRatBN7.2 Ensembl	3	80,300,477 - 80,373,812 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165303 ⟹ ENSRNOP00000103201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	100,718,827 - 100,811,218 (-)	Ensembl

RefSeq Acc Id:

NM_001107752 ⟹ NP_001101222

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,718,823 - 100,829,129 (-)	NCBI
mRatBN7.2	3	80,263,491 - 80,373,808 (-)	NCBI
Rnor_6.0	3	83,198,832 - 83,306,590 (-)	NCBI
Rnor_5.0	3	89,898,702 - 90,006,238 (-)	NCBI
RGSC_v3.4	3	78,736,486 - 78,815,334 (-)	RGD
Celera	3	79,490,280 - 79,568,165 (-)	NCBI

Sequence:

show sequence

GGCAAGATGGCGGCGGCAATAGGGGTCCGCGGCCGGTTCGAGCTGCTATCTTGCTCCGGCCCAG
GTTGGCTTATCAGCCTTTCCGCTTTGCTGAGCGTGGTGGCTCGAGGGGCCTTGGCCACTACGCA
CTGGGTCGTCACGGAGGACGGGAAGATCCAACAGCAGGTGGACTCACCAATGAACTTGAAGCAT
CCCCATGACTTAGTCATCTTAATGAGACAAGAAACAACCGTTAACTACCTCAAAGAACTAGAGA
AACAATTAGTTGCTCAAAAAATTCACATAGAGGAGAATGAGGACAGAGACACAGGACTGGAACA
GAGGCACAATAAAGAAGACCCCGACTGCATCAAGGCCAAAGTGCCTTTGGGAGACCTGGACCTT
TATGACGGCACATATATAACTCTAGAGAGCAAGGATGTCAGGCCTGAGGATTTCATAGACACAG
AATCTCCTGTCCCTCCAGACCCAGAGCAACCTGATTGTACTAAAATCCTAGAGCTTCCATATAG
TATACATGCTTTTCAGCATTTACGGGGTGTACAAGAGAGAGTTAATCTCTCTGCCCCTCTCTTA
CCTAAAGAAGATCCAATCTTCACATATTTGTCGAAACGCTTAGGAAGGAGTATCGACGACATAG
GTCACCTCATTCACGAAGGCCTACAGAAGAACTCTTCCTCCTGGGTACTGTATAACCTAGCTTC
ATTTTACTGGAGAATAAAGAATGAGCCATATCAGGTAGTGGAGTGCACCATGCGAGCTCTTCAC
TTCTCTTCCAGGCACAATAAAGACATTGCCCTGGTCAATTTGGCCAATGTTCTACACAGAGCGC
ATTTCTCCGCGGATGCTGCTGTCGTGGTCCATGCAGCTCTGGATGACAGTGCCTTCTTCACCAG
CTATTACACACTGGGGAATATATATGCAATGCTCGGGGAGTATAACCATTCGGTGCTCTGTTAC
GACCATGCTTTGCAAGCCAAACCTGGGTTTGAGCAAGCTATAAAGAGGAAGCATGCTGTCCTGT
GTCAACAAAAACTGGAGCAGAAGCTAGAGGCTCAGCATAGGTCCCTTCAGAGAACACTGAATGA
GTTGAAGGAGTACCAGAAGCAGCATGACCACTACCTGCGGCAGCAGGAGATCCTAGAGAAGCAC
AAACTGATTCAGGAGGAGCAGATCTTGCGCAACATCATCCACGAGACACAGATGGCCAAAGAGG
CACAACTGGGAAATCATCAGATATGCAGGCTGGTCAACCAGCAGCATAGTTTGCACTGCCAGTG
GGACCAACCTGTACGCTACCATCGAGGAGACATCTTTGAAAATGTGGACTATGTTCAGTTTGGT
GATGATTCATCGACCTCCAGTATGATGTCCGTGAACTTCGATGTCCCTACAAATCAGAGTGACG
TCAGCGAATCTGTCAGGTCTTCTCCTGTAGCGCATTCTGTTCTCTGGGTCTGGGGCCGTGACTC
TGATGCATATAGGGACAAACAACATATTCTTTGGCCTAAAAGAGCAGATTGTACAGACAGCTAT
CCCAGAGTTCCCCTCGGTGGAGAACTGCCAACATACTTCCTGCCTCCGGAGAACAAAGGACTCA
GGATCCACGAACTGACCAGTGATGATTATTCTTCAGAAGAGGAGGCCCAAACCCCTGACTGTTC
CATAACTGACTTCAGAAAAAGCCACACTCTGTCCTACTTAGTCAAAGAATTAGAGGTCCGCATG
GATCTGAAAGCCAAAATCCCCGATGACCATGCACGCAAAATTTTACTTTCCCGTATTAAAAACT
ATACTATCCCAGAAGAAGAAATTGGGTCTTTCTTGTTTCATGCTATTAACAAGCCAAATGCTCC
TGTCTGGCTCATTCTGAATGAGGCGGGCCTGTACTGGAGAGCAGTAGGAAACAGCACTTTTGCT
ATCGCCTGCCTTCAGAGGGCTTTGAATTTAGCTCCAGTTCAATACCAAGACATTCCTCTTGTCA
ACCTGGCCAACCTTTTGATTCATTATGGCCTTCATCTCGATGCTACAAAGTTGCTCCTGCAAGC
ACTGGCTGTCAACAGCTCCGAGCCCCTGACCTTTTTGAGCCTGGGAAATGCTTACCTTGCTCTG
AAGAATGTCAGCGGGGCACTTGAAGCCTTCAGACAGGCCTTGAAGTTAACCACCAGATGCCCAG
AGTGTGAGAGCAGCCTGAAGCTGATCCGCTGCATGCAGTTTTACCCTTTTCTGTACAACATCAC
CTCTTCTGTTTGTAGTGGTCATTGTCATGAGAAAACCCTGGACAACAGCCATGACAAACAGAAA
TACTTTGCCAAGCCACAGTCATTGGATGCTGCTGAAGAAGAGCCCTCTAGGCACGGAGCAGACG
AGGACCCTGTGCTGTCTGTTGAGAACGCAGGGAGGGACTCAGATGCCCTTAGACTTGAAAGCAC
AGTGGTTGAAGAGAGCAACGGTTCTGACGAGGTGGAGAAGTCAGAGGAAACAAAGATGTCAGAA
GAGATACTGGCCTTGGTGGATGAGTTTCAGCAGGCCTGGCCTCTGGAAGGTTTGGGGGGAACAT
TAGAAATGAAGGGGCGGCGTCTGGACCTGCAGGGAATACGGGTCCTGAAGAAAGGGCCCCAGGA
TGGAGTAGCCAAGAGCTCTTGCTATGGAGACTGCAGAAGTGAAGATGATGAAGCAACAGAATGG
ATCACATTCCAGGTCAAGCGTGTAAAGAAACCCAAAGGGGATCATAAAAAACCTCCTGGGAAAA
AAGTAGAGGCAAGTCAAGCAGAAAATGGACAGCGTTACCAAGCAAACTTAGAGATCACAGGCCC
AAAGGTGGCATCTCCTGGGCCCCAGGAAAAAAAGCGTGACTACCAGAGTATGGGGTGGCCCAGT
CCAGATGAGTGCCTCAAGCTCCGCTGGGTAGAGCTAACTGCCATTGTGAGCACCTGGCTAGCAG
TGTCTTCAAAAAACATTGACATCACAGAACACATAGACTTTGCCACACCCATACAACAGCCAGC
AATGGAACCTCTGTGCAATGGCAATCTCCCCACAAGCATGCATACCCTGGACCACTTACATGGA
GTGTCCAACAGAGCCAGCCTGCACTACACCGGTGAGAGCCAGCTAACAGAGGTACTGCAGAATC
TTGGCAAGGACCAGTACCCTCAGCAGTCGCTTGAACAAATCGGCACCCGAATTGCCAAGGTTTT
GGAAAAAAATCAGACATCATGGGTCCTTTCCAGCATGGCAGCCCTCTACTGGAGAGTGAAAGGT
CAGGGGAAAAAAGCCATCGACTGCCTGCGCCAGGCCCTCCACTATGCTCCCCACCAGATGAAGG
ATGTGCCCCTCATCAGCCTGGCCAACATCCTACACAATGCCAAGCTCTGGAATGATGCTGTCGT
CGTGGCCACCATGGCCGTGGAGATCGCGCCACACTTCGCTGTGAACCACTTCACTCTGGGCAAT
GTCTATGTGGCAATGGAAGAATTTGAGAAGGCCCTGGTGTGGTACGAGTCAACGCTGAAGCTGC
AACCAGAGTTTGTACCTGCCAAGAATCGAATCCAGACAATCCAGTGCCACCTCATGCTGAAGAA
GGGCCGGCGCTCTCCCTAGAGCACTCCTTCCTGTCCCTCAGCTCTCCCAGCCCTCGTGAACAGA
GCCCCATCACTGCTGGTATCCGCATGGATGATGTGTGTGAATTGCCAAGTAAAGTGTAGCAGAG
CTCAGCTGCCAGGGCTTCTAAGTTCTTCCTCATCTCCAGAAGCAGGGTTCCCCAGACACTGTAA
ATACTGAGCCAGGACAACTCGGAGCTCCGCTCCGTCTTCCAAACCTCCATGCCTTCAAGGCTCC
TCTGTGGTCCAGCCTTTTCCCTGGGGAGGCCAGAGCCACACTGCCCATTCTCTGCTTCCTGTGT
AGCCTCTGTTGTCCCTGGAATTGCAATGCCACCTGGGGCCAGTCAGTGAGAAGCAGGGATTCTC
CATGTCCCCACCAGCTCTCCTCTCTGACCCAGTCTCATCCATTCCACGCTGCTATGTTACAAGC
TCTCAGAGATAGTTTGCAGGGGAGGAAGGGGAAACAACTTTACAAACAAAATATTTACAACAGC
AGAAACTCTTAGGGTCACCTGACCTTTGTAAGTTATTTATGTTGGGGCGGGAGGGGGGCTGAGC
AGGGGAGTCAGCCGTGTGCAACATCTTTATCATTTGTATTTTAATTGCCGATCACAAGGAAACC
AATACATTCAAGTCCTATATAACAGGTTTATATATATAGAATATGTGTATTTGAAGCCCTCTAC
AGACCGAGTCTGTATTACTAATTCCTTGTTCGCTGTGTTTCATGTCTTGGACTAGGCGTGACTG
TCAGCCCTCTCTCTGAGGCTGACACCCAGCTCCTCAGAACAGAGCCAGGAGCCAAGGTTGGGTG
CCCTTACCTGTGGTCCCTGGAGAATCAAAAACTCCAACATTTTGGATTCTTTAAGGGCACATCC
TGAGAACAAAAATAAAAATTGTTTATGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234582 ⟹ XP_006234644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,725,819 - 100,829,464 (-)	NCBI
mRatBN7.2	3	80,271,072 - 80,374,137 (-)	NCBI
Rnor_6.0	3	83,206,415 - 83,306,621 (-)	NCBI
Rnor_5.0	3	89,898,702 - 90,006,238 (-)	NCBI

Sequence:

show sequence

CCGTTTCCGGTGTGAGCGGCGGGGCCGGGGGGGCAAGATGGCGGCGGCAATAGGGGTCCGCGGC
CGGTTCGAGCTGCTATCTTGCTCCGGCCCAGGTTGGCTTATCAGCCTTTCCGCTTTGCTGAGCG
TGGTGGCTCGAGGGGCCTTGGCCACTACGCACTGGGTCGTCACGGAGGACGGGAAGATCCAACA
GCAGGTGGACTCACCAATGAACTTGAAGCATCCCCATGACTTAGTCATCTTAATGAGACAAGAA
ACAACCGTTAACTACCTCAAAGAACTAGAGAAACAATTAGTTGCTCAAAAAATTCACATAGAGG
AGAATGAGGACAGAGACACAGGACTGGAACAGAGGCACAATAAAGAAGACCCCGACTGCATCAA
GGCCAAAGTGCCTTTGGGAGACCTGGACCTTTATGACGGCACATATATAACTCTAGAGAGCAAG
GATGTCAGGCCTGAGGATTTCATAGACACAGAATCTCCTGTCCCTCCAGACCCAGAGCAACCTG
ATTGTACTAAAATCCTAGAGCTTCCATATAGTATACATGCTTTTCAGCATTTACGGGGTGTACA
AGAGAGAGTTAATCTCTCTGCCCCTCTCTTACCTAAAGAAGATCCAATCTTCACATATTTGTCG
AAACGCTTAGGAAGGAGTATCGACGACATAGGTCACCTCATTCACGAAGGCCTACAGAAGAACT
CTTCCTCCTGGGTACTGTATAACCTAGCTTCATTTTACTGGAGAATAAAGAATGAGCCATATCA
GGTAGTGGAGTGCACCATGCGAGCTCTTCACTTCTCTTCCAGGCACAATAAAGACATTGCCCTG
GTCAATTTGGCCAATGTTCTACACAGAGCGCATTTCTCCGCGGATGCTGCTGTCGTGGTCCATG
CAGCTCTGGATGACAGTGCCTTCTTCACCAGCTATTACACACTGGGGAATATATATGCAATGCT
CGGGGAGTATAACCATTCGGTGCTCTGTTACGACCATGCTTTGCAAGCCAAACCTGGGTTTGAG
CAAGCTATAAAGAGGAAGCATGCTGTCCTGTGTCAACAAAAACTGGAGCAGAAGCTAGAGGCTC
AGCATAGGTCCCTTCAGAGAACACTGAATGAGTTGAAGGAGTACCAGAAGCAGCATGACCACTA
CCTGCGGCAGCAGGAGATCCTAGAGAAGCACAAACTGATTCAGGAGGAGCAGATCTTGCGCAAC
ATCATCCACGAGACACAGATGGCCAAAGAGGCACAACTGGGAAATCATCAGATATGCAGGCTGG
TCAACCAGCAGCATAGTTTGCACTGCCAGTGGGACCAACCTGTACGCTACCATCGAGGAGACAT
CTTTGAAAATGTGGACTATGTTCAGTTTGGTGATGATTCATCGACCTCCAGTATGATGTCCGTG
AACTTCGATGTCCCTACAAATCAGAGTGACGTCAGCGAATCTGTCAGGTCTTCTCCTGTAGCGC
ATTCTGTTCTCTGGGTCTGGGGCCGTGACTCTGATGCATATAGGGACAAACAACATATTCTTTG
GCCTAAAAGAGCAGATTGTACAGACAGCTATCCCAGAGTTCCCCTCGGTGGAGAACTGCCAACA
TACTTCCTGCCTCCGGAGAACAAAGGACTCAGGATCCACGAACTGACCAGTGATGATTATTCTT
CAGAAGAGGAGGCCCAAACCCCTGACTGTTCCATAACTGACTTCAGAAAAAGCCACACTCTGTC
CTACTTAGTCAAAGAATTAGAGGTCCGCATGGATCTGAAAGCCAAAATCCCCGATGACCATGCA
CGCAAAATTTTACTTTCCCGTATTAAAAACTATACTATCCCAGAAGAAGAAATTGGGTCTTTCT
TGTTTCATGCTATTAACAAGCCAAATGCTCCTGTCTGGCTCATTCTGAATGAGGCGGGCCTGTA
CTGGAGAGCAGTAGGAAACAGCACTTTTGCTATCGCCTGCCTTCAGAGGGCTTTGAATTTAGCT
CCAGTTCAATACCAAGACATTCCTCTTGTCAACCTGGCCAACCTTTTGATTCATTATGGCCTTC
ATCTCGATGCTACAAAGTTGCTCCTGCAAGCACTGGCTGTCAACAGCTCCGAGCCCCTGACCTT
TTTGAGCCTGGGAAATGCTTACCTTGCTCTGAAGAATGTCAGCGGGGCACTTGAAGCCTTCAGA
CAGGCCTTGAAGTTAACCACCAGATGCCCAGAGTGTGAGAGCAGCCTGAAGCTGATCCGCTGCA
TGCAGTTTTACCCTTTTCTGTACAACATCACCTCTTCTGTTTGTAGTGGTCATTGTCATGAGAA
AACCCTGGACAACAGCCATGACAAACAGAAATACTTTGCCAAGCCACAGTCATTGGATGCTGCT
GAAGAAGAGCCCTCTAGGCACGGAGCAGACGAGGACCCTGTGCTGTCTGTTGAGAACGCAGGGA
GGGACTCAGATGCCCTTAGACTTGAAAGCACAGTGGTTGAAGAGAGCAACGGTTCTGACGAGGT
GGAGAAGTCAGAGGAAACAAAGATGTCAGAAGAGATACTGGCCTTGGTGGATGAGTTTCAGCAG
GCCTGGCCTCTGGAAGGTTTGGGGGGAACATTAGAAATGAAGGGGCGGCGTCTGGACCTGCAGG
GAATACGGGTCCTGAAGAAAGGGCCCCAGGATGGAGTAGCCAAGAGCTCTTGCTATGGAGACTG
CAGAAGTGAAGATGATGAAGCAACAGAATGGATCACATTCCAGGTCAAGCGTGTAAAGAAACCC
AAAGGGGATCATAAAAAACCTCCTGGGAAAAAAGTAGAGGCAAGTCAAGCAGAAAATGGACAGC
GTTACCAAGCAAACTTAGAGATCACAGGCCCAAAGGTGGCATCTCCTGGGCCCCAGGAAAAAAA
GCGTGACTACCAGAGTATGGGGTGGCCCAGTCCAGATGAGTGCCTCAAGCTCCGCTGGGTAGAG
CTAACTGCCATTGTGAGCACCTGGCTAGCAGTGTCTTCAAAAAACATTGACATCACAGAACACA
TAGACTTTGCCACACCCATACAACAGCCAGCAATGGAACCTCTGTGCAATGGCAATCTCCCCAC
AAGCATGCATACCCTGGACCACTTACATGGAGTGTCCAACAGAGCCAGCCTGCACTACACCGGT
GAGAGCCAGCTAACAGAGGTACTGCAGAATCTTGGCAAGGACCAGTACCCTCAGCAGTCGCTTG
AACAAATCGGCACCCGAATTGCCAAGGTTTTGGAAAAATCTGTACAAGAACAAGCTCCAGTGAC
CCCGTCTCCACCTGACCCTCCCATCTCCACCTGACCCTTCAGAGCTAGGGTTACAGGTATAGAA
AGGTGCTTGGGTCTTAACTCTAATCCTCACAATTACACAGTCAGCACCCTTACCTGTTGAGCCA
TCTCTCCAGCTCCCTGCTTCCATGACCAGTGCCTTAGTTTGGGTTGAATTGCTCTGAAGAGACA
CCATGATCACGGCAACTCTTAGTAGACAAACATTTAATTGAAGATGGCTTACTTAGTTCATTGT
CCTAGAAGGAAGCATGGCTGCATGCAGACAGACGTAGTGCTGGAGAAGGATCGGAGAGTTCTAT
ATCTTGATCCAAAAGCAGCAGAAGGACACTGTGTCCCGCCTAGCTTGAGCATAGGAGACCTCAA
AGCCAACCCCCACAGTGGCTCACTTCCTCCAACAAGGCCACAGCTCTTAATAGTGCCATGGCCT
ATGGGGGCCATTTTCTTTCAAACCACCACAACCATCTACCTTCTACAATTTCTTCTACTTAAGT
TAAATTAAACTGGAAGTTTGTAGCGTG

hide sequence

RefSeq Acc Id:

XM_017591720 ⟹ XP_017447209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,718,820 - 100,829,464 (-)	NCBI
mRatBN7.2	3	80,263,488 - 80,373,849 (-)	NCBI
Rnor_6.0	3	83,198,829 - 83,306,622 (-)	NCBI

Sequence:

show sequence

TCCGTTTCCGGTGTGAGCGGCGGGGCCGGGGGGGCAAGATGGCGGCGGCAATAGGGGTCCGCGG
CCGGTTCGAGCTGCTATCTTGCTCCGGCCCAGGTTGGCTTATCAGCCTTTCCGCTTTGCTGAGC
GTGGTGGCTCGAGGGGCCTTGGCCACTACGCACTGGGTCGTCACGGAGGACGGGAAGATCCAAC
AGCAGGTGGACTCACCAATGAACTTGAAGCATCCCCATGACTTAGTCATCTTAATGAGACAAGA
AACAACCGTTAACTACCTCAAAGAACTAGAGAAACAATTAGTTGCTCAAAAAATTCACATAGAG
GAGAATGAGGACAGAGACACAGGACTGGAACAGAGGCACAATAAAGAAGACCCCGACTGCATCA
AGGCCAAAGTGCCTTTGGGAGACCTGGACCTTTATGACGGCACATATATAACTCTAGAGAGCAA
GGATGTCAGGCCTGAGGATTTCATAGACACAGAATCTCCTGTCCCTCCAGACCCAGAGCAACCT
GATTGTACTAAAATCCTAGAGCTTCCATATAGTATACATGCTTTTCAGCATTTACGGGGTGTAC
AAGAGAGAGTTAATCTCTCTGCCCCTCTCTTACCTAAAGAAGATCCAATCTTCACATATTTGTC
GAAACGCTTAGGAAGGAGTATCGACGACATAGGTCACCTCATTCACGAAGGCCTACAGAAGAAC
TCTTCCTCCTGGGTACTGTATAACCTAGCTTCATTTTACTGGAGAATAAAGAATGAGCCATATC
AGGTAGTGGAGTGCACCATGCGAGCTCTTCACTTCTCTTCCAGGCACAATAAAGACATTGCCCT
GGTCAATTTGGCCAATGTTCTACACAGAGCGCATTTCTCCGCGGATGCTGCTGTCGTGGTCCAT
GCAGCTCTGGATGACAGTGCCTTCTTCACCAGCTATTACACACTGGGGAATATATATGCAATGC
TCGGGGAGTATAACCATTCGGTGCTCTGTTACGACCATGCTTTGCAAGCCAAACCTGGGTTTGA
GCAAGCTATAAAGAGGAAGCATGCTGTCCTGTGTCAACAAAAACTGGAGCAGAAGCTAGAGGCT
CAGCATAGGTCCCTTCAGAGAACACTGAATGAGTTGAAGGAGTACCAGAAGCAGCATGACCACT
ACCTGCGGCAGCAGGAGATCCTAGAGAAGCACAAACTGATTCAGGAGGAGCAGATCTTGCGCAA
CATCATCCACGAGACACAGATGGCCAAAGAGGCACAACTGGGAAATCATCAGATATGCAGGCTG
GTCAACCAGCAGCATAGTTTGCACTGCCAGTGGGACCAACCTGTACGCTACCATCGAGGAGACA
TCTTTGAAAATGTGGACTATGTTCAGTTTGGTGATGATTCATCGACCTCCAGTATGATGTCCGT
GAACTTCGATGTCCCTACAAATCAGAGTGACGTCAGCGAATCTGTCAGGTCTTCTCCTGTAGCG
CATTCTGTTCTCTGGGTCTGGGGCCGTGACTCTGATGCATATAGGGACAAACAACATATTCTTT
GGCCTAAAAGAGCAGATTGTACAGACAGCTATCCCAGAGTTCCCCTCGGTGGAGAACTGCCAAC
ATACTTCCTGCCTCCGGAGAACAAAGGACTCAGGATCCACGAACTGACCAGTGATGATTATTCT
TCAGAAGAGGAGGCCCAAACCCCTGACTGTTCCATAACTGACTTCAGAAAAAGCCACACTCTGT
CCTACTTAGTCAAAGAATTAGAGGTCCGCATGGATCTGAAAGCCAAAATCCCCGATGACCATGC
ACGCAAAATTTTACTTTCCCGTATTAAAAACTATACTATCCCAGAAGAAGAAATTGGGTCTTTC
TTGTTTCATGCTATTAACAAGCCAAATGCTCCTGTCTGGCTCATTCTGAATGAGGCGGGCCTGT
ACTGGAGAGCAGTAGGAAACAGCACTTTTGCTATCGCCTGCCTTCAGAGGGCTTTGAATTTAGC
TCCAGTTCAATACCAAGACATTCCTCTTGTCAACCTGGCCAACCTTTTGATTCATTATGGCCTT
CATCTCGATGCTACAAAGTTGCTCCTGCAAGCACTGGCTGTCAACAGCTCCGAGCCCCTGACCT
TTTTGAGCCTGGGAAATGCTTACCTTGCTCTGAAGAATGTCAGCGGGGCACTTGAAGCCTTCAG
ACAGGCCTTGAAGTTAACCACCAGATGCCCAGAGTGTGAGAGCAGCCTGAAGCTGATCCGCTGC
ATGCAGTTTTACCCTTTTCTGTACAACATCACCTCTTCTGTTTGTAGTGGCACAGTGGTTGAAG
AGAGCAACGGTTCTGACGAGGTGGAGAAGTCAGAGGAAACAAAGATGTCAGAAGAGATACTGGC
CTTGGTGGATGAGTTTCAGCAGGCCTGGCCTCTGGAAGGTTTGGGGGGAACATTAGAAATGAAG
GGGCGGCGTCTGGACCTGCAGGGAATACGGGTCCTGAAGAAAGGGCCCCAGGATGGAGTAGCCA
AGAGCTCTTGCTATGGAGACTGCAGAAGTGAAGATGATGAAGCAACAGAATGGATCACATTCCA
GGTCAAGCGTGTAAAGAAACCCAAAGGGGATCATAAAAAACCTCCTGGGAAAAAAGTAGAGGCA
AGTCAAGCAGAAAATGGACAGCGTTACCAAGCAAACTTAGAGATCACAGGCCCAAAGGTGGCAT
CTCCTGGGCCCCAGGAAAAAAAGCGTGACTACCAGAGTATGGGGTGGCCCAGTCCAGATGAGTG
CCTCAAGCTCCGCTGGGTAGAGCTAACTGCCATTGTGAGCACCTGGCTAGCAGTGTCTTCAAAA
AACATTGACATCACAGAACACATAGACTTTGCCACACCCATACAACAGCCAGCAATGGAACCTC
TGTGCAATGGCAATCTCCCCACAAGCATGCATACCCTGGACCACTTACATGGAGTGTCCAACAG
AGCCAGCCTGCACTACACCGGTGAGAGCCAGCTAACAGAGGTACTGCAGAATCTTGGCAAGGAC
CAGTACCCTCAGCAGTCGCTTGAACAAATCGGCACCCGAATTGCCAAGGTTTTGGAAAAAAATC
AGACATCATGGGTCCTTTCCAGCATGGCAGCCCTCTACTGGAGAGTGAAAGGTCAGGGGAAAAA
AGCCATCGACTGCCTGCGCCAGGCCCTCCACTATGCTCCCCACCAGATGAAGGATGTGCCCCTC
ATCAGCCTGGCCAACATCCTACACAATGCCAAGCTCTGGAATGATGCTGTCGTCGTGGCCACCA
TGGCCGTGGAGATCGCGCCACACTTCGCTGTGAACCACTTCACTCTGGGCAATGTCTATGTGGC
AATGGAAGAATTTGAGAAGGCCCTGGTGTGGTACGAGTCAACGCTGAAGCTGCAACCAGAGTTT
GTACCTGCCAAGAATCGAATCCAGACAATCCAGTGCCACCTCATGCTGAAGAAGGGCCGGCGCT
CTCCCTAGAGCACTCCTTCCTGTCCCTCAGCTCTCCCAGCCCTCGTGAACAGAGCCCCATCACT
GCTGGTATCCGCATGGATGATGTGTGTGAATTGCCAAGTAAAGTGTAGCAGAGCTCAGCTGCCA
GGGCTTCTAAGTTCTTCCTCATCTCCAGAAGCAGGGTTCCCCAGACACTGTAAATACTGAGCCA
GGACAACTCGGAGCTCCGCTCCGTCTTCCAAACCTCCATGCCTTCAAGGCTCCTCTGTGGTCCA
GCCTTTTCCCTGGGGAGGCCAGAGCCACACTGCCCATTCTCTGCTTCCTGTGTAGCCTCTGTTG
TCCCTGGAATTGCAATGCCACCTGGGGCCAGTCAGTGAGAAGCAGGGATTCTCCATGTCCCCAC
CAGCTCTCCTCTCTGACCCAGTCTCATCCATTCCACGCTGCTATGTTACAAGCTCTCAGAGATA
GTTTGCAGGGGAGGAAGGGGAAACAACTTTACAAACAAAATATTTACAACAGCAGAAACTCTTA
GGGTCACCTGACCTTTGTAAGTTATTTATGTTGGGGCGGGAGGGGGGCTGAGCAGGGGAGTCAG
CCGTGTGCAACATCTTTATCATTTGTATTTTAATTGCCGATCACAAGGAAACCAATACATTCAA
GTCCTATATAACAGGTTTATATATATAGAATATGTGTATTTGAAGCCCTCTACAGACCGAGTCT
GTATTACTAATTCCTTGTTCGCTGTGTTTCATGTCTTGGACTAGGCGTGACTGTCAGCCCTCTC
TCTGAGGCTGACACCCAGCTCCTCAGAACAGAGCCAGGAGCCAAGGTTGGGTGCCCTTACCTGT
GGTCCCTGGAGAATCAAAAACTCCAACATTTTGGATTCTTTAAGGGCACATCCTGAGAACAAAA
ATAAAAATTGTTTATGAGCAAAATCA

hide sequence

RefSeq Acc Id:

XM_017591721 ⟹ XP_017447210

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,755,801 - 100,829,464 (-)	NCBI
mRatBN7.2	3	80,300,374 - 80,374,137 (-)	NCBI
Rnor_6.0	3	83,233,159 - 83,306,621 (-)	NCBI

Sequence:

show sequence

CCGTTTCCGGTGTGAGCGGCGGGGCCGGGGGGGCAAGATGGCGGCGGCAATAGGGGTCCGCGGC
CGGTTCGAGCTGCTATCTTGCTCCGGCCCAGGTTGGCTTATCAGCCTTTCCGCTTTGCTGAGCG
TGGTGGCTCGAGGGGCCTTGGCCACTACGCACTGGGTCGTCACGGAGGACGGGAAGATCCAACA
GCAGGTGGACTCACCAATGAACTTGAAGCATCCCCATGACTTAGTCATCTTAATGAGACAAGAA
ACAACCGTTAACTACCTCAAAGAACTAGAGAAACAATTAGTTGCTCAAAAAATTCACATAGAGG
AGAATGAGGACAGAGACACAGGACTGGAACAGAGGCACAATAAAGAAGACCCCGACTGCATCAA
GGCCAAAGTGCCTTTGGGAGACCTGGACCTTTATGACGGCACATATATAACTCTAGAGAGCAAG
GATGTCAGGCCTGAGGATTTCATAGACACAGAATCTCCTGTCCCTCCAGACCCAGAGCAACCTG
ATTGTACTAAAATCCTAGAGCTTCCATATAGTATACATGCTTTTCAGCATTTACGGGGTGTACA
AGAGAGAGTTAATCTCTCTGCCCCTCTCTTACCTAAAGAAGATCCAATCTTCACATATTTGTCG
AAACGCTTAGGAAGGAGTATCGACGACATAGGTCACCTCATTCACGAAGGCCTACAGAAGAACT
CTTCCTCCTGGGTACTGTATAACCTAGCTTCATTTTACTGGAGAATAAAGAATGAGCCATATCA
GGTAGTGGAGTGCACCATGCGAGCTCTTCACTTCTCTTCCAGGCACAATAAAGACATTGCCCTG
GTCAATTTGGCCAATGTTCTACACAGAGCGCATTTCTCCGCGGATGCTGCTGTCGTGGTCCATG
CAGCTCTGGATGACAGTGCCTTCTTCACCAGCTATTACACACTGGGGAATATATATGCAATGCT
CGGGGAGTATAACCATTCGGTGCTCTGTTACGACCATGCTTTGCAAGCCAAACCTGGGTTTGAG
CAAGCTATAAAGAGGAAGCATGCTGTCCTGTGTCAACAAAAACTGGAGCAGAAGCTAGAGGCTC
AGCATAGGTCCCTTCAGAGAACACTGAATGAGTTGAAGGAGTACCAGAAGCAGCATGACCACTA
CCTGCGGCAGCAGGAGATCCTAGAGAAGCACAAACTGATTCAGGAGGAGCAGATCTTGCGCAAC
ATCATCCACGAGACACAGATGGCCAAAGAGGCACAACTGGGAAATCATCAGATATGCAGGCTGG
TCAACCAGCAGCATAGTTTGCACTGCCAGTGGGACCAACCTGTACGCTACCATCGAGGAGACAT
CTTTGAAAATGTGGACTATGTTCAGTTTGGTGATGATTCATCGACCTCCAGTATGATGTCCGTG
AACTTCGATGTCCCTACAAATCAGAGTGACGTCAGCGAATCTGTCAGGTCTTCTCCTGTAGCGC
ATTCTGTTCTCTGGGTCTGGGGCCGTGACTCTGATGCATATAGGGACAAACAACATATTCTTTG
GCCTAAAAGAGCAGATTGTACAGACAGCTATCCCAGAGTTCCCCTCGGTGGAGAACTGCCAACA
TACTTCCTGCCTCCGGAGAACAAAGGACTCAGGATCCACGAACTGACCAGTGATGATTATTCTT
CAGAAGAGGAGGCCCAAACCCCTGACTGTTCCATAACTGACTTCAGAAAAAGCCACACTCTGTC
CTACTTAGTCAAAGAATTAGAGGTCCGCATGGATCTGAAAGCCAAAATCCCCGATGACCATGCA
CGCAAAATTTTACTTTCCCGTATTAAAAACTATACTATCCCAGAAGAAGAAATTGGGTCTTTCT
TGTTTCATGCTATTAACAAGCCAAATGCTCCTGTCTGGCTCATTCTGAATGAGGCGGGCCTGTA
CTGGAGAGCAGTAGGAAACAGCACTTTTGCTATCGCCTGCCTTCAGAGGGCTTTGAATTTAGCT
CCAGTTCAATACCAAGACATTCCTCTTGTCAACCTGGCCAACCTTTTGATTCATTATGGCCTTC
ATCTCGATGCTACAAAGTTGCTCCTGCAAGCACTGGCTGTCAACAGCTCCGAGCCCCTGACCTT
TTTGAGCCTGGGAAATGCTTACCTTGCTCTGAAGAATGTCAGCGGGGCACTTGAAGCCTTCAGA
CAGGCCTTGAAGTTAACCACCAGATGCCCAGAGTGTGAGAGCAGCCTGAAGCTGATCCGCTGCA
TGCAGTTTTACCCTTTTCTGTACAACATCACCTCTTCTGTTTGTAGTGGTCATTGTCATGAGAA
AACCCTGGACAACAGCCATGACAAACAGAAATACTTTGCCAAGCCACAGTCATTGGATGCTGCT
GAAGAAGAGCCCTCTAGGCACGGAGCAGACGAGGACCCTGTGCTGTCTGTTGAGAACGCAGGGA
GGGACTCAGATGCCCTTAGACTTGAAAGCACAGTGGTTGAAGAGAGCAACGGTTCTGACGAGGT
GGAGAAGTCAGAGGAAACAAAGATGTCAGAAGAGATACTGGCCTTGGTGGATGAGTTTCAGCAG
GCCTGGCCTCTGGAAGGTTTGGGGGGAACATTAGAAATGAAGGGGCGGCGTCTGGACCTGCAGG
GAATACGGGTCCTGAAGAAAGGGCCCCAGGATGGAGTAGCCAAGAGCTCTTGCTATGGAGACTG
CAGAAGTGAAGATGATGAAGCAACAGAATGGATCACATTCCAGGTCAAGCGTGTAAAGAAACCC
AAAGGGGATCATAAAAAACCTCCTGGGAAAAAAGTAGAGGCAAGTCAAGCAGAAAATGGACAGC
GTTACCAAGCAAACTTAGAGATCACAGGCCCAAAGGTGGCATCTCCTGGGCCCCAGGGGCTTCT
AGACTGGAAGACCAGGGAAGTGCCATAGACATAATATAACTGGACCTCAGCAAGGCATTTAACA
TCCTCTTATGATATCCTTGTGACCAAGATGGAGAGATGTGGGCTCGAAGTTTCCCACTGCCTAC
AGGATAAAGTGCAGACTTCCTAGTGTGGCATTCAAGACCCTTTATAAAGCAGCCTCTCTCCACC
CTCCACCACCACCCAGGAAGCAGCCATGCTCTGATTTTACCCATGCCTTTGCATATGCTGTTCC
TTCTGCCTGGGATGCCCTTATACCACTTCTGCGGTGCTAGTATCACTCACCCTTAAACTTGAAA
CTCAAGTGCCATTTCTCCCTTGCTGCCTTCAGACAGAAGTAGTTGCTCCTTCCTTTGTTCAACT
CGTGGGCTCCTCCTTGAACACTATGTTGTGACAGTGTAACAGTTCCTTATGTCTGCCTTCCTCC
CTAGCCTGTGAGCTGCAGAGCAGGCTGCCTCTTCCTGTGTGTACCCCAGTGTGTTACACAGTTC
CCAGACCCTTATAATAGGTGCTCAATAAATATTTTTGATTGAATTTCTTAAATATAAAATGAAA
GTGATCTTTATTGTTTAATGTACTCGTTATTCAAAGTTATTTTGAAATTCTTCCAAGCTGTTTT
TTTTTTTCTTTATTAAATCTGAATCTAAATCCCT

hide sequence

RefSeq Acc Id:

XM_039104915 ⟹ XP_038960843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,755,801 - 100,829,464 (-)	NCBI
mRatBN7.2	3	80,300,374 - 80,374,137 (-)	NCBI

RefSeq Acc Id:

XM_063283678 ⟹ XP_063139748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,718,820 - 100,829,464 (-)	NCBI

RefSeq Acc Id:

XM_063283679 ⟹ XP_063139749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,718,820 - 100,829,464 (-)	NCBI

RefSeq Acc Id:

XR_005501866

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,723,464 - 100,829,464 (-)	NCBI
mRatBN7.2	3	80,268,132 - 80,374,137 (-)	NCBI

RefSeq Acc Id:

XR_005501867

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,723,464 - 100,829,464 (-)	NCBI
mRatBN7.2	3	80,268,134 - 80,374,137 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101222	(Get FASTA)	NCBI Sequence Viewer
	XP_006234644	(Get FASTA)	NCBI Sequence Viewer
	XP_017447209	(Get FASTA)	NCBI Sequence Viewer
	XP_017447210	(Get FASTA)	NCBI Sequence Viewer
	XP_038960843	(Get FASTA)	NCBI Sequence Viewer
	XP_063139748	(Get FASTA)	NCBI Sequence Viewer
	XP_063139749	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92626	(Get FASTA)	NCBI Sequence Viewer
	AAI68714	(Get FASTA)	NCBI Sequence Viewer
	B5DEL3	(Get FASTA)	NCBI Sequence Viewer
	EDL79609	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014088
	ENSRNOP00000014088.6
	ENSRNOP00000077556
	ENSRNOP00000090386

RefSeq Acc Id:	NP_001101222 ⟸ NM_001107752
- Peptide Label:	precursor
- UniProtKB:	F1MA48 (UniProtKB/Swiss-Prot), B5DEL3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAAIGVRGRFELLSCSGPGWLISLSALLSVVARGALATTHWVVTEDGKIQQQVDSPMNLKHPH DLVILMRQETTVNYLKELEKQLVAQKIHIEENEDRDTGLEQRHNKEDPDCIKAKVPLGDLDLYD GTYITLESKDVRPEDFIDTESPVPPDPEQPDCTKILELPYSIHAFQHLRGVQERVNLSAPLLPK EDPIFTYLSKRLGRSIDDIGHLIHEGLQKNSSSWVLYNLASFYWRIKNEPYQVVECTMRALHFS SRHNKDIALVNLANVLHRAHFSADAAVVVHAALDDSAFFTSYYTLGNIYAMLGEYNHSVLCYDH ALQAKPGFEQAIKRKHAVLCQQKLEQKLEAQHRSLQRTLNELKEYQKQHDHYLRQQEILEKHKL IQEEQILRNIIHETQMAKEAQLGNHQICRLVNQQHSLHCQWDQPVRYHRGDIFENVDYVQFGDD SSTSSMMSVNFDVPTNQSDVSESVRSSPVAHSVLWVWGRDSDAYRDKQHILWPKRADCTDSYPR VPLGGELPTYFLPPENKGLRIHELTSDDYSSEEEAQTPDCSITDFRKSHTLSYLVKELEVRMDL KAKIPDDHARKILLSRIKNYTIPEEEIGSFLFHAINKPNAPVWLILNEAGLYWRAVGNSTFAIA CLQRALNLAPVQYQDIPLVNLANLLIHYGLHLDATKLLLQALAVNSSEPLTFLSLGNAYLALKN VSGALEAFRQALKLTTRCPECESSLKLIRCMQFYPFLYNITSSVCSGHCHEKTLDNSHDKQKYF AKPQSLDAAEEEPSRHGADEDPVLSVENAGRDSDALRLESTVVEESNGSDEVEKSEETKMSEEI LALVDEFQQAWPLEGLGGTLEMKGRRLDLQGIRVLKKGPQDGVAKSSCYGDCRSEDDEATEWIT FQVKRVKKPKGDHKKPPGKKVEASQAENGQRYQANLEITGPKVASPGPQEKKRDYQSMGWPSPD ECLKLRWVELTAIVSTWLAVSSKNIDITEHIDFATPIQQPAMEPLCNGNLPTSMHTLDHLHGVS NRASLHYTGESQLTEVLQNLGKDQYPQQSLEQIGTRIAKVLEKNQTSWVLSSMAALYWRVKGQG KKAIDCLRQALHYAPHQMKDVPLISLANILHNAKLWNDAVVVATMAVEIAPHFAVNHFTLGNVY VAMEEFEKALVWYESTLKLQPEFVPAKNRIQTIQCHLMLKKGRRSP hide sequence

RefSeq Acc Id:

XP_006234644 ⟸ XM_006234582

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAAAIGVRGRFELLSCSGPGWLISLSALLSVVARGALATTHWVVTEDGKIQQQVDSPMNLKHPH
DLVILMRQETTVNYLKELEKQLVAQKIHIEENEDRDTGLEQRHNKEDPDCIKAKVPLGDLDLYD
GTYITLESKDVRPEDFIDTESPVPPDPEQPDCTKILELPYSIHAFQHLRGVQERVNLSAPLLPK
EDPIFTYLSKRLGRSIDDIGHLIHEGLQKNSSSWVLYNLASFYWRIKNEPYQVVECTMRALHFS
SRHNKDIALVNLANVLHRAHFSADAAVVVHAALDDSAFFTSYYTLGNIYAMLGEYNHSVLCYDH
ALQAKPGFEQAIKRKHAVLCQQKLEQKLEAQHRSLQRTLNELKEYQKQHDHYLRQQEILEKHKL
IQEEQILRNIIHETQMAKEAQLGNHQICRLVNQQHSLHCQWDQPVRYHRGDIFENVDYVQFGDD
SSTSSMMSVNFDVPTNQSDVSESVRSSPVAHSVLWVWGRDSDAYRDKQHILWPKRADCTDSYPR
VPLGGELPTYFLPPENKGLRIHELTSDDYSSEEEAQTPDCSITDFRKSHTLSYLVKELEVRMDL
KAKIPDDHARKILLSRIKNYTIPEEEIGSFLFHAINKPNAPVWLILNEAGLYWRAVGNSTFAIA
CLQRALNLAPVQYQDIPLVNLANLLIHYGLHLDATKLLLQALAVNSSEPLTFLSLGNAYLALKN
VSGALEAFRQALKLTTRCPECESSLKLIRCMQFYPFLYNITSSVCSGHCHEKTLDNSHDKQKYF
AKPQSLDAAEEEPSRHGADEDPVLSVENAGRDSDALRLESTVVEESNGSDEVEKSEETKMSEEI
LALVDEFQQAWPLEGLGGTLEMKGRRLDLQGIRVLKKGPQDGVAKSSCYGDCRSEDDEATEWIT
FQVKRVKKPKGDHKKPPGKKVEASQAENGQRYQANLEITGPKVASPGPQEKKRDYQSMGWPSPD
ECLKLRWVELTAIVSTWLAVSSKNIDITEHIDFATPIQQPAMEPLCNGNLPTSMHTLDHLHGVS
NRASLHYTGESQLTEVLQNLGKDQYPQQSLEQIGTRIAKVLEKSVQEQAPVTPSPPDPPIST

hide sequence

RefSeq Acc Id:	XP_017447209 ⟸ XM_017591720
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GIU8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAIGVRGRFELLSCSGPGWLISLSALLSVVARGALATTHWVVTEDGKIQQQVDSPMNLKHPH DLVILMRQETTVNYLKELEKQLVAQKIHIEENEDRDTGLEQRHNKEDPDCIKAKVPLGDLDLYD GTYITLESKDVRPEDFIDTESPVPPDPEQPDCTKILELPYSIHAFQHLRGVQERVNLSAPLLPK EDPIFTYLSKRLGRSIDDIGHLIHEGLQKNSSSWVLYNLASFYWRIKNEPYQVVECTMRALHFS SRHNKDIALVNLANVLHRAHFSADAAVVVHAALDDSAFFTSYYTLGNIYAMLGEYNHSVLCYDH ALQAKPGFEQAIKRKHAVLCQQKLEQKLEAQHRSLQRTLNELKEYQKQHDHYLRQQEILEKHKL IQEEQILRNIIHETQMAKEAQLGNHQICRLVNQQHSLHCQWDQPVRYHRGDIFENVDYVQFGDD SSTSSMMSVNFDVPTNQSDVSESVRSSPVAHSVLWVWGRDSDAYRDKQHILWPKRADCTDSYPR VPLGGELPTYFLPPENKGLRIHELTSDDYSSEEEAQTPDCSITDFRKSHTLSYLVKELEVRMDL KAKIPDDHARKILLSRIKNYTIPEEEIGSFLFHAINKPNAPVWLILNEAGLYWRAVGNSTFAIA CLQRALNLAPVQYQDIPLVNLANLLIHYGLHLDATKLLLQALAVNSSEPLTFLSLGNAYLALKN VSGALEAFRQALKLTTRCPECESSLKLIRCMQFYPFLYNITSSVCSGTVVEESNGSDEVEKSEE TKMSEEILALVDEFQQAWPLEGLGGTLEMKGRRLDLQGIRVLKKGPQDGVAKSSCYGDCRSEDD EATEWITFQVKRVKKPKGDHKKPPGKKVEASQAENGQRYQANLEITGPKVASPGPQEKKRDYQS MGWPSPDECLKLRWVELTAIVSTWLAVSSKNIDITEHIDFATPIQQPAMEPLCNGNLPTSMHTL DHLHGVSNRASLHYTGESQLTEVLQNLGKDQYPQQSLEQIGTRIAKVLEKNQTSWVLSSMAALY WRVKGQGKKAIDCLRQALHYAPHQMKDVPLISLANILHNAKLWNDAVVVATMAVEIAPHFAVNH FTLGNVYVAMEEFEKALVWYESTLKLQPEFVPAKNRIQTIQCHLMLKKGRRSP hide sequence

RefSeq Acc Id:	XP_017447210 ⟸ XM_017591721
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZKB8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAIGVRGRFELLSCSGPGWLISLSALLSVVARGALATTHWVVTEDGKIQQQVDSPMNLKHPH DLVILMRQETTVNYLKELEKQLVAQKIHIEENEDRDTGLEQRHNKEDPDCIKAKVPLGDLDLYD GTYITLESKDVRPEDFIDTESPVPPDPEQPDCTKILELPYSIHAFQHLRGVQERVNLSAPLLPK EDPIFTYLSKRLGRSIDDIGHLIHEGLQKNSSSWVLYNLASFYWRIKNEPYQVVECTMRALHFS SRHNKDIALVNLANVLHRAHFSADAAVVVHAALDDSAFFTSYYTLGNIYAMLGEYNHSVLCYDH ALQAKPGFEQAIKRKHAVLCQQKLEQKLEAQHRSLQRTLNELKEYQKQHDHYLRQQEILEKHKL IQEEQILRNIIHETQMAKEAQLGNHQICRLVNQQHSLHCQWDQPVRYHRGDIFENVDYVQFGDD SSTSSMMSVNFDVPTNQSDVSESVRSSPVAHSVLWVWGRDSDAYRDKQHILWPKRADCTDSYPR VPLGGELPTYFLPPENKGLRIHELTSDDYSSEEEAQTPDCSITDFRKSHTLSYLVKELEVRMDL KAKIPDDHARKILLSRIKNYTIPEEEIGSFLFHAINKPNAPVWLILNEAGLYWRAVGNSTFAIA CLQRALNLAPVQYQDIPLVNLANLLIHYGLHLDATKLLLQALAVNSSEPLTFLSLGNAYLALKN VSGALEAFRQALKLTTRCPECESSLKLIRCMQFYPFLYNITSSVCSGHCHEKTLDNSHDKQKYF AKPQSLDAAEEEPSRHGADEDPVLSVENAGRDSDALRLESTVVEESNGSDEVEKSEETKMSEEI LALVDEFQQAWPLEGLGGTLEMKGRRLDLQGIRVLKKGPQDGVAKSSCYGDCRSEDDEATEWIT FQVKRVKKPKGDHKKPPGKKVEASQAENGQRYQANLEITGPKVASPGPQGLLDWKTREVP hide sequence

Ensembl Acc Id:

ENSRNOP00000014088 ⟸ ENSRNOT00000014088

RefSeq Acc Id:	XP_038960843 ⟸ XM_039104915
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000077556 ⟸ ENSRNOT00000110475

Ensembl Acc Id:

ENSRNOP00000090386 ⟸ ENSRNOT00000099588

RefSeq Acc Id:	XP_063139749 ⟸ XM_063283679
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063139748 ⟸ XM_063283678
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000103201 ⟸ ENSRNOT00000165303

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DEL3-F1-model_v2	AlphaFold	B5DEL3	1-1198	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305410	AgrOrtholog
BioCyc Gene	G2FUF-48653	BioCyc
Ensembl Genes	ENSRNOG00000010495	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000014088	ENTREZGENE
	ENSRNOT00000014088.8	UniProtKB/Swiss-Prot
	ENSRNOT00000099588	ENTREZGENE
	ENSRNOT00000110475	ENTREZGENE
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7314238	IMAGE-MGC_LOAD
InterPro	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot
	TPR_repeat	UniProtKB/Swiss-Prot
	TTC17	UniProtKB/Swiss-Prot
KEGG Report	rno:311224	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109317	IMAGE-MGC_LOAD
NCBI Gene	311224	ENTREZGENE
PANTHER	TETRATRICOPEPTIDE REPEAT PROTEIN 17	UniProtKB/Swiss-Prot
	TTC17 PROTEIN	UniProtKB/Swiss-Prot
Pfam	TPR_8	UniProtKB/Swiss-Prot
PhenoGen	Ttc17	PhenoGen
PROSITE	TPR	UniProtKB/Swiss-Prot
	TPR_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000010495	RatGTEx
SMART	TPR	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZKB8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GIU8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LNC3_RAT	UniProtKB/TrEMBL
	A6HNK8_RAT	UniProtKB/TrEMBL
	B5DEL3	ENTREZGENE
	F1MA48	ENTREZGENE
	Q562A7_RAT	UniProtKB/TrEMBL
	TTC17_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	F1MA48	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ttc17	tetratricopeptide repeat domain 17	Ttc17_predicted	tetratricopeptide repeat domain 17 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ttc17_predicted	tetratricopeptide repeat domain 17 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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