Lyar (Ly1 antibody reactive) - Rat Genome Database

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Gene: Lyar (Ly1 antibody reactive) Rattus norvegicus
Analyze
Symbol: Lyar
Name: Ly1 antibody reactive
RGD ID: 1305352
Description: Predicted to enable several functions, including DNA-binding transcription factor binding activity; identical protein binding activity; and transcription regulator inhibitor activity. Predicted to be involved in several processes, including erythrocyte development; positive regulation of phagocytosis; and regulation of DNA-templated transcription. Predicted to be located in nucleoplasm and photoreceptor outer segment. Predicted to be active in nucleolus. Orthologous to human LYAR (Ly1 antibody reactive); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cell growth-regulating nucleolar protein; LOC289707; Ly1 antibody reactive clone; Ly1 antibody reactive homolog; Ly1 antibody reactive homolog (mouse)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,789,193 - 76,802,973 (-)NCBIGRCr8
mRatBN7.21472,576,878 - 72,590,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,576,879 - 72,590,612 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1477,018,568 - 77,032,136 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,259,442 - 78,273,010 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,699,518 - 74,713,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01477,308,211 - 77,321,931 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,308,204 - 77,321,977 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01477,290,073 - 77,303,793 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,859,637 - 77,873,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11477,862,030 - 77,875,596 (-)NCBI
Celera1471,527,386 - 71,540,966 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dioxygen  (ISO)
diuron  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
menadione  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
thioacetamide  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleolus  (IBA,IEA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO,ISS)
photoreceptor outer segment  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8491376   PMID:12477932   PMID:15489334   PMID:22658674   PMID:22681889   PMID:22720776   PMID:24495227   PMID:25092918   PMID:25735755   PMID:35352799  


Genomics

Comparative Map Data
Lyar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,789,193 - 76,802,973 (-)NCBIGRCr8
mRatBN7.21472,576,878 - 72,590,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,576,879 - 72,590,612 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1477,018,568 - 77,032,136 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,259,442 - 78,273,010 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,699,518 - 74,713,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01477,308,211 - 77,321,931 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,308,204 - 77,321,977 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01477,290,073 - 77,303,793 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,859,637 - 77,873,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11477,862,030 - 77,875,596 (-)NCBI
Celera1471,527,386 - 71,540,966 (-)NCBICelera
Cytogenetic Map14q21NCBI
LYAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3844,267,701 - 4,290,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl44,267,701 - 4,290,154 (-)EnsemblGRCh38hg38GRCh38
GRCh3744,269,428 - 4,291,881 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3644,320,337 - 4,342,744 (-)NCBINCBI36Build 36hg18NCBI36
Celera44,167,051 - 4,189,521 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef44,205,115 - 4,227,579 (-)NCBIHuRef
CHM1_144,267,309 - 4,289,782 (-)NCBICHM1_1
T2T-CHM13v2.044,237,159 - 4,259,618 (-)NCBIT2T-CHM13v2.0
Lyar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,377,815 - 38,391,650 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,377,814 - 38,391,650 (+)EnsemblGRCm39 Ensembl
GRCm38538,220,471 - 38,234,306 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,220,470 - 38,234,306 (+)EnsemblGRCm38mm10GRCm38
MGSCv37538,611,721 - 38,625,545 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,508,799 - 38,522,546 (+)NCBIMGSCv36mm8
Celera535,670,252 - 35,684,076 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.29NCBI
Lyar
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555145,358,843 - 5,376,112 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555145,358,843 - 5,375,990 (+)NCBIChiLan1.0ChiLan1.0
LYAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v234,534,513 - 4,557,030 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan144,467,357 - 4,489,984 (-)NCBINHGRI_mPanPan1
PanPan1.144,348,263 - 4,370,716 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl44,348,263 - 4,364,347 (-)Ensemblpanpan1.1panPan2
LYAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,710,735 - 69,724,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,710,735 - 69,724,177 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,262,732 - 72,281,663 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0370,467,687 - 70,486,622 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl370,467,692 - 70,486,574 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1369,741,785 - 69,760,718 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0369,906,935 - 69,925,842 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0370,288,339 - 70,307,278 (-)NCBIUU_Cfam_GSD_1.0
Lyar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528563,232,715 - 63,257,046 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647716,934,401 - 16,958,722 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,081,368 - 6,099,857 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.186,081,332 - 6,099,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.285,776,295 - 5,794,805 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LYAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12740,410,849 - 40,433,942 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604787,211,025 - 87,233,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyar
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475521,434,144 - 21,450,124 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lyar
38 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:12
Interacting mature miRNAs:14
Transcripts:ENSRNOT00000007154
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
BE111765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21472,576,960 - 72,577,115 (+)MAPPERmRatBN7.2
Rnor_6.01477,308,294 - 77,308,448NCBIRnor6.0
Rnor_5.01477,290,156 - 77,290,310UniSTSRnor5.0
RGSC_v3.41477,859,716 - 77,859,870UniSTSRGSC3.4
Celera1471,527,465 - 71,527,619UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000007154   ⟹   ENSRNOP00000007154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1472,576,879 - 72,590,612 (-)Ensembl
Rnor_6.0 Ensembl1477,308,218 - 77,321,783 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084093   ⟹   ENSRNOP00000073585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1472,577,497 - 72,590,612 (-)Ensembl
Rnor_6.0 Ensembl1477,308,204 - 77,321,977 (-)Ensembl
RefSeq Acc Id: NM_001011911   ⟹   NP_001011911
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,789,197 - 76,802,765 (-)NCBI
mRatBN7.21472,576,882 - 72,590,451 (-)NCBI
Rnor_6.01477,308,215 - 77,321,783 (-)NCBI
Rnor_5.01477,290,073 - 77,303,793 (-)NCBI
RGSC_v3.41477,859,637 - 77,873,205 (-)RGD
Celera1471,527,386 - 71,540,966 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251087   ⟹   XP_006251149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,789,193 - 76,802,973 (-)NCBI
mRatBN7.21472,576,878 - 72,590,854 (-)NCBI
Rnor_6.01477,308,211 - 77,321,931 (-)NCBI
Rnor_5.01477,290,073 - 77,303,793 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063272938   ⟹   XP_063129008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,789,193 - 76,802,973 (-)NCBI
RefSeq Acc Id: XM_063272939   ⟹   XP_063129009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,789,193 - 76,802,900 (-)NCBI
RefSeq Acc Id: XM_063272940   ⟹   XP_063129010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,789,193 - 76,802,814 (-)NCBI
RefSeq Acc Id: XM_063272941   ⟹   XP_063129011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,789,193 - 76,802,799 (-)NCBI
RefSeq Acc Id: NP_001011911   ⟸   NM_001011911
- UniProtKB: Q6AYK5 (UniProtKB/Swiss-Prot),   A6IJU1 (UniProtKB/TrEMBL),   A0A0G2K5W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251149   ⟸   XM_006251087
- Peptide Label: isoform X2
- UniProtKB: Q6AYK5 (UniProtKB/Swiss-Prot),   A6IJU1 (UniProtKB/TrEMBL),   A0A0G2K5W6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007154   ⟸   ENSRNOT00000007154
Ensembl Acc Id: ENSRNOP00000073585   ⟸   ENSRNOT00000084093
RefSeq Acc Id: XP_063129008   ⟸   XM_063272938
- Peptide Label: isoform X1
- UniProtKB: A0A8L2UI20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129009   ⟸   XM_063272939
- Peptide Label: isoform X1
- UniProtKB: A0A8L2UI20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129010   ⟸   XM_063272940
- Peptide Label: isoform X1
- UniProtKB: A0A8L2UI20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129011   ⟸   XM_063272941
- Peptide Label: isoform X2
- UniProtKB: Q6AYK5 (UniProtKB/Swiss-Prot),   A6IJU1 (UniProtKB/TrEMBL)
Protein Domains
Acetyl-coA carboxylase zinc finger   Zinc finger C2H2 LYAR-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYK5-F1-model_v2 AlphaFold Q6AYK5 1-386 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699367
Promoter ID:EPDNEW_R9892
Type:initiation region
Name:Lyar_2
Description:Ly1 antibody reactive
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9893  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01477,321,848 - 77,321,908EPDNEW
RGD ID:13699382
Promoter ID:EPDNEW_R9893
Type:initiation region
Name:Lyar_1
Description:Ly1 antibody reactive
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9892  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01477,321,959 - 77,322,019EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305352 AgrOrtholog
BioCyc Gene G2FUF-15384 BioCyc
Ensembl Genes ENSRNOG00000005374 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007154.6 UniProtKB/TrEMBL
  ENSRNOT00000084093.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1490.490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113133 IMAGE-MGC_LOAD
InterPro LYAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf-ACC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_LYAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:289707 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93922 IMAGE-MGC_LOAD
NCBI Gene 289707 ENTREZGENE
PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-ACC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-LYAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lyar PhenoGen
PROSITE ADH_ZINC UniProtKB/Swiss-Prot
  ZF_C2HC_LYAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005374 RatGTEx
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K5W6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UI20 ENTREZGENE, UniProtKB/TrEMBL
  A6IJU1 ENTREZGENE, UniProtKB/TrEMBL
  LYAR_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-18 Lyar  Ly1 antibody reactive  Lyar  Ly1 antibody reactive homolog (mouse)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Lyar  Ly1 antibody reactive homolog (mouse)  Lyar  Ly1 antibody reactive clone  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Lyar  Ly1 antibody reactive clone  Lyar_predicted  Ly1 antibody reactive clone (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Lyar_predicted  Ly1 antibody reactive clone (predicted)      Symbol and Name status set to approved 70820 APPROVED