Plxna2 (plexin A2) - Rat Genome Database

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Gene: Plxna2 (plexin A2) Rattus norvegicus
Analyze
Symbol: Plxna2
Name: plexin A2
RGD ID: 1305325
Description: Predicted to enable identical protein binding activity and semaphorin receptor activity. Predicted to be involved in several processes, including chordate embryonic development; limb bud formation; and semaphorin-plexin signaling pathway. Predicted to act upstream of or within cell surface receptor signaling pathway; centrosome localization; and cerebellar granule cell precursor tangential migration. Predicted to be located in membrane. Predicted to be part of semaphorin receptor complex. Predicted to be active in plasma membrane. Orthologous to human PLXNA2 (plexin A2); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC289392; plexin-A2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813108,683,155 - 108,888,336 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl13108,691,530 - 108,887,453 (+)EnsemblGRCr8
mRatBN7.213106,163,103 - 106,358,979 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13106,163,103 - 106,358,979 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx13108,680,453 - 108,876,370 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013110,064,288 - 110,260,205 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013107,282,294 - 107,478,236 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.013113,373,569 - 113,570,774 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13113,373,578 - 113,571,648 (+)Ensemblrn6Rnor6.0
Rnor_5.013117,922,569 - 118,118,393 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.413110,555,958 - 110,754,672 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera13105,589,023 - 105,784,376 (+)NCBICelera
RGSC_v3.113110,745,080 - 110,943,775 (+)NCBI
Cytogenetic Map13q27NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-Chloro-4-(dichloromethyl)-5-hydroxy-2(5H)-furanone  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
buspirone  (EXP)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
ferroheme b  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
geldanamycin  (ISO)
genistein  (ISO)
glafenine  (EXP)
heme b  (ISO)
hydrogen cyanide  (ISO)
ketamine  (EXP)
lead diacetate  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
nimesulide  (EXP)
okadaic acid  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trametinib  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18327254   PMID:19666519   PMID:20877282   PMID:20881961   PMID:34474008   PMID:37068642  


Genomics

Comparative Map Data
Plxna2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813108,683,155 - 108,888,336 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl13108,691,530 - 108,887,453 (+)EnsemblGRCr8
mRatBN7.213106,163,103 - 106,358,979 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13106,163,103 - 106,358,979 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx13108,680,453 - 108,876,370 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013110,064,288 - 110,260,205 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013107,282,294 - 107,478,236 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.013113,373,569 - 113,570,774 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13113,373,578 - 113,571,648 (+)Ensemblrn6Rnor6.0
Rnor_5.013117,922,569 - 118,118,393 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.413110,555,958 - 110,754,672 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera13105,589,023 - 105,784,376 (+)NCBICelera
RGSC_v3.113110,745,080 - 110,943,775 (+)NCBI
Cytogenetic Map13q27NCBI
PLXNA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381208,022,242 - 208,244,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1208,022,242 - 208,244,850 (-)Ensemblhg38GRCh38
GRCh371208,195,587 - 208,417,729 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361206,262,210 - 206,484,288 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341204,588,613 - 204,805,511NCBI
Celera1181,426,043 - 181,648,153 (-)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1178,869,811 - 179,092,243 (-)NCBIHuRef
CHM1_11209,467,937 - 209,690,032 (-)NCBICHM1_1
T2T-CHM13v2.01207,268,990 - 207,491,104 (-)NCBIT2T-CHM13v2.0
Plxna2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,302,020 - 194,499,177 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,300,526 - 194,499,177 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381194,619,791 - 194,816,869 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,618,218 - 194,816,869 (+)Ensemblmm10GRCm38
MGSCv371196,446,023 - 196,643,063 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361196,320,645 - 196,513,298 (+)NCBIMGSCv36mm8
Celera1201,520,017 - 201,716,761 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.27NCBI
Plxna2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554893,914,633 - 4,116,825 (+)Ensembl
ChiLan1.0NW_0049554893,914,137 - 4,116,780 (+)NCBIChiLan1.0ChiLan1.0
PLXNA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2141,129,373 - 41,377,257 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1141,095,498 - 41,343,386 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01183,600,533 - 183,848,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11188,408,041 - 188,654,934 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1188,408,048 - 188,603,208 (-)EnsemblpanPan2panpan1.1
PLXNA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,863,518 - 7,049,301 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,863,663 - 7,049,250 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha76,437,004 - 6,642,874 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.076,557,829 - 6,740,234 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.176,489,645 - 6,695,313 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.076,592,131 - 6,797,972 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.076,632,893 - 6,838,534 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plxna2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934467,498,267 - 67,680,171 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365574,738,447 - 4,920,453 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365574,808,371 - 4,920,453 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9134,584,406 - 134,796,063 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19134,584,760 - 134,800,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29148,294,163 - 148,333,326 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLXNA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12521,201,867 - 21,424,529 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2521,202,014 - 21,419,521 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605521,812,850 - 22,035,628 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxna2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248073,643,255 - 3,834,128 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248073,643,283 - 3,829,817 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Plxna2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11072,574,807 - 72,770,261 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:562
Count of miRNA genes:243
Interacting mature miRNAs:358
Transcripts:ENSRNOT00000009900
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
D13Got103  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213106,231,849 - 106,232,066 (+)MAPPERmRatBN7.2
Rnor_6.013113,442,390 - 113,442,606NCBIRnor6.0
Rnor_5.013117,991,248 - 117,991,464UniSTSRnor5.0
RGSC_v3.413110,631,019 - 110,631,236RGDRGSC3.4
RGSC_v3.413110,631,020 - 110,631,236UniSTSRGSC3.4
Celera13105,657,646 - 105,657,862UniSTS
RGSC_v3.113110,820,124 - 110,820,340RGD
RH 3.4 Map13757.6UniSTS
RH 3.4 Map13757.6RGD
RH 2.0 Map13767.8RGD
Cytogenetic Map13q27UniSTS
D13Got114  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213106,179,568 - 106,179,857 (+)MAPPERmRatBN7.2
Rnor_6.013113,390,042 - 113,390,330NCBIRnor6.0
Rnor_5.013117,939,098 - 117,939,386UniSTSRnor5.0
RGSC_v3.413110,574,962 - 110,575,251RGDRGSC3.4
RGSC_v3.413110,574,963 - 110,575,251UniSTSRGSC3.4
Celera13105,605,490 - 105,605,778UniSTS
RGSC_v3.113110,764,067 - 110,764,355RGD
RH 3.4 Map13759.6UniSTS
RH 3.4 Map13759.6RGD
RH 2.0 Map13775.6RGD
Cytogenetic Map13q27UniSTS
AW457381  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213106,355,172 - 106,355,260 (+)MAPPERmRatBN7.2
Rnor_6.013113,566,968 - 113,567,055NCBIRnor6.0
Rnor_5.013118,114,587 - 118,114,674UniSTSRnor5.0
RGSC_v3.413110,752,431 - 110,752,518UniSTSRGSC3.4
Celera13105,780,570 - 105,780,657UniSTS
Cytogenetic Map13q27UniSTS
BE114222  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213106,266,435 - 106,266,591 (+)MAPPERmRatBN7.2
Rnor_6.013113,478,232 - 113,478,387NCBIRnor6.0
Rnor_5.013118,025,851 - 118,026,006UniSTSRnor5.0
RGSC_v3.413110,663,695 - 110,663,850UniSTSRGSC3.4
Celera13105,691,809 - 105,691,964UniSTS
RH 3.4 Map13794.8UniSTS
Cytogenetic Map13q27UniSTS
MARC_9713-9714:996688545:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213106,343,225 - 106,343,985 (+)MAPPERmRatBN7.2
Rnor_6.013113,555,021 - 113,555,780NCBIRnor6.0
Rnor_5.013118,102,640 - 118,103,399UniSTSRnor5.0
RGSC_v3.413110,740,484 - 110,741,243UniSTSRGSC3.4
Celera13105,768,621 - 105,769,380UniSTS
Cytogenetic Map13q27UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 41 59 6 304 141 11 142 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009900   ⟹   ENSRNOP00000009900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl13108,691,530 - 108,887,453 (+)Ensembl
mRatBN7.2 Ensembl13106,163,103 - 106,358,979 (+)Ensembl
Rnor_6.0 Ensembl13113,373,578 - 113,571,648 (+)Ensembl
RefSeq Acc Id: NM_001105988   ⟹   NP_001099458
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813108,691,530 - 108,887,453 (+)NCBI
mRatBN7.213106,163,103 - 106,358,979 (+)NCBI
Rnor_6.013113,373,569 - 113,570,774 (+)NCBI
Rnor_5.013117,922,569 - 118,118,393 (+)NCBI
RGSC_v3.413110,555,958 - 110,754,672 (+)RGD
Celera13105,589,023 - 105,784,376 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063272193   ⟹   XP_063128263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813108,683,155 - 108,888,336 (+)NCBI
RefSeq Acc Id: XM_063272194   ⟹   XP_063128264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813108,852,893 - 108,888,336 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001099458 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128263 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128264 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL95045 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009900
  ENSRNOP00000009900.5
RefSeq Acc Id: NP_001099458   ⟸   NM_001105988
- UniProtKB: D3ZWP6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009900   ⟸   ENSRNOT00000009900
RefSeq Acc Id: XP_063128263   ⟸   XM_063272193
- Peptide Label: isoform X1
- UniProtKB: D3ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128264   ⟸   XM_063272194
- Peptide Label: isoform X2
- UniProtKB: A6JH39 (UniProtKB/TrEMBL)
Protein Domains
IPT/TIG   PSI   Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWP6-F1-model_v2 AlphaFold D3ZWP6 1-1894 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699130
Promoter ID:EPDNEW_R9655
Type:multiple initiation site
Name:Plxna2_1
Description:plexin A2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013113,373,565 - 113,373,625EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305325 AgrOrtholog
BioCyc Gene G2FUF-16768 BioCyc
Ensembl Genes ENSRNOG00000007324 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009900 ENTREZGENE
  ENSRNOT00000009900.9 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  GTPase Activation - p120gap, domain 1 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin-A2_sema UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  TIG1_plexin UniProtKB/TrEMBL
  TIG2_plexin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
KEGG Report rno:289392 UniProtKB/TrEMBL
NCBI Gene 289392 ENTREZGENE
PANTHER PLEXIN-A2 UniProtKB/TrEMBL
  PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  PSI_PlexinA-B UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
  TIG_2 UniProtKB/TrEMBL
  TIG_plexin UniProtKB/TrEMBL
PhenoGen Plxna2 PhenoGen
PROSITE SEMA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007324 RatGTEx
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Ig_E-set UniProtKB/TrEMBL
  Plexin repeat UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
UniProt A6JH39 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWP6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Plxna2  plexin A2   Plxna2_predicted  plexin A2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Plxna2_predicted  plexin A2 (predicted)      Symbol and Name status set to approved 70820 APPROVED