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Gene: Zfp518a (zinc finger protein 518A) Rattus norvegicus

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Symbol:

Zfp518a

Name:

zinc finger protein 518A

RGD ID:

1305314

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZNF518A (zinc finger protein 518A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC309478; MGC124846; RGD1305314; similar to KIAA0335; zinc finger protein 518; Znf518; Znf518a

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF518A (zinc finger protein 518A)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB
Mus musculus (house mouse):	Zfp518a (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf518a (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF518A (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF518A (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf518a (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF518A (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF518A (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf518a (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf518a (zinc finger protein 518A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KDM6B (lysine demethylase 6B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZNF518A (zinc finger protein 518A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp518a (zinc finger protein 518A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-214e3.5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hbl-1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	znf518a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf518a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	249,668,815 - 249,694,401 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	249,657,809 - 249,695,569 (+)	Ensembl				GRCr8
mRatBN7.2	1	239,719,305 - 239,744,978 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	239,719,505 - 239,744,979 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	247,862,601 - 247,887,301 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	254,559,704 - 254,584,404 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	247,212,730 - 247,237,430 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	260,152,881 - 260,178,360 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	260,153,645 - 260,178,349 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	267,595,979 - 267,621,556 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	246,057,957 - 246,082,661 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	235,563,511 - 235,588,215 (+)	NCBI		Celera
RGSC_v3.1	1	246,190,725 - 246,197,095 (+)	NCBI
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Bufotalin (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

endosulfan (EXP,ISO)

FR900359 (ISO)

furan (EXP)

geldanamycin (ISO)

GSK-J4 (ISO)

indometacin (ISO)

levonorgestrel (ISO)

Licochalcone B (ISO)

linsidomine (EXP)

methoxyacetic acid (ISO)

methylmercury chloride (ISO)

Monobutylphthalate (ISO)

nickel sulfate (ISO)

ochratoxin A (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

quercetin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

succimer (ISO)

sunitinib (ISO)

testosterone undecanoate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Zfp518a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	249,668,815 - 249,694,401 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	249,657,809 - 249,695,569 (+)	Ensembl				GRCr8
mRatBN7.2	1	239,719,305 - 239,744,978 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	239,719,505 - 239,744,979 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	247,862,601 - 247,887,301 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	254,559,704 - 254,584,404 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	247,212,730 - 247,237,430 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	260,152,881 - 260,178,360 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	260,153,645 - 260,178,349 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	267,595,979 - 267,621,556 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	246,057,957 - 246,082,661 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	235,563,511 - 235,588,215 (+)	NCBI		Celera
RGSC_v3.1	1	246,190,725 - 246,197,095 (+)	NCBI
Cytogenetic Map	1	q54	NCBI

ZNF518A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	96,129,715 - 96,205,291 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	96,129,695 - 96,205,288 (+)	Ensembl			hg38	GRCh38
GRCh37	10	97,889,472 - 97,965,047 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	97,879,462 - 97,913,507 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	97,879,493 - 97,912,480	NCBI
Celera	10	91,630,675 - 91,664,729 (+)	NCBI		Celera
Cytogenetic Map	10	q24.1	NCBI
HuRef	10	91,517,449 - 91,551,509 (+)	NCBI		HuRef
CHM1_1	10	98,171,307 - 98,205,402 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	97,009,000 - 97,084,595 (+)	NCBI		T2T-CHM13v2.0

Zfp518a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	40,882,472 - 40,906,391 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	40,883,149 - 40,906,391 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	40,894,031 - 40,917,947 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	40,894,705 - 40,917,947 (+)	Ensembl			mm10	GRCm38
MGSCv37	19	40,969,195 - 40,992,437 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	40,947,509 - 40,971,258 (+)	NCBI		MGSCv36	mm8
Celera	19	41,697,616 - 41,721,057 (+)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	34.26	NCBI

Znf518a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	2,373,166 - 2,377,611 (+)	Ensembl
ChiLan1.0	NW_004955507	2,350,734 - 2,377,855 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF518A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	108,036,247 - 108,111,829 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	108,041,339 - 108,117,766 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	92,743,048 - 92,818,154 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	96,249,621 - 96,283,235 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

ZNF518A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	9,572,436 - 9,681,510 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	9,592,924 - 9,597,396 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	9,757,367 - 9,784,075 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	9,843,780 - 9,870,489 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	9,845,091 - 9,869,882 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	9,552,569 - 9,579,429 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	9,611,916 - 9,638,623 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	9,755,578 - 9,782,386 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf518a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	37,218,830 - 37,305,926 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	3,314,943 - 3,319,379 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	3,311,979 - 3,345,040 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF518A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	107,590,598 - 107,619,768 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	107,590,080 - 107,633,917 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	117,224,041 - 117,279,073 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF518A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	89,285,520 - 89,317,282 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	89,309,965 - 89,314,413 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	50,156,954 - 50,285,726 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf518a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	7,537,816 - 7,542,267 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624737	7,519,340 - 7,544,529 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf518a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	40,036,920 - 40,042,993 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp518a
271 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	834
Count of miRNA genes:	320
Interacting mature miRNAs:	422
Transcripts:	ENSRNOT00000054717
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
2316896	Gluco57	Glucose level QTL 57	7.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	238398865	255849249	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

AI426493

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	239,744,561 - 239,744,684 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	260,177,944 - 260,178,066	NCBI	Rnor6.0
Rnor_5.0	1	267,621,140 - 267,621,262	UniSTS	Rnor5.0
RGSC_v3.4	1	246,082,256 - 246,082,378	UniSTS	RGSC3.4
Celera	1	235,587,810 - 235,587,932	UniSTS
Cytogenetic Map	1	q54	UniSTS

RH132059

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	239,744,637 - 239,744,854 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	260,178,020 - 260,178,236	NCBI	Rnor6.0
Rnor_5.0	1	267,621,216 - 267,621,432	UniSTS	Rnor5.0
RGSC_v3.4	1	246,082,332 - 246,082,548	UniSTS	RGSC3.4
Celera	1	235,587,886 - 235,588,102	UniSTS
Cytogenetic Map	1	q54	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001030038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000054717 ⟹ ENSRNOP00000051600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,672,119 - 249,694,401 (+)	Ensembl
mRatBN7.2 Ensembl	1	239,720,190 - 239,744,979 (+)	Ensembl
Rnor_6.0 Ensembl	1	260,153,645 - 260,178,349 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097947 ⟹ ENSRNOP00000092189

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,657,809 - 249,694,528 (+)	Ensembl
mRatBN7.2 Ensembl	1	239,719,505 - 239,744,979 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098938 ⟹ ENSRNOP00000096129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,670,159 - 249,694,339 (+)	Ensembl
mRatBN7.2 Ensembl	1	239,720,252 - 239,744,979 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105629 ⟹ ENSRNOP00000095709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,670,137 - 249,694,401 (+)	Ensembl
mRatBN7.2 Ensembl	1	239,720,789 - 239,744,979 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111652 ⟹ ENSRNOP00000080397

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,669,808 - 249,694,401 (+)	Ensembl
mRatBN7.2 Ensembl	1	239,720,377 - 239,744,979 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126549 ⟹ ENSRNOP00000103958

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,668,789 - 249,695,569 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139822 ⟹ ENSRNOP00000106655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,668,789 - 249,695,569 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154743 ⟹ ENSRNOP00000106652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,669,564 - 249,694,528 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159284 ⟹ ENSRNOP00000102056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	249,669,657 - 249,693,793 (+)	Ensembl

RefSeq Acc Id:

NM_001030038 ⟹ NP_001025209

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,669,686 - 249,694,390 (+)	NCBI
mRatBN7.2	1	239,720,263 - 239,744,967 (+)	NCBI
Rnor_6.0	1	260,153,645 - 260,178,349 (+)	NCBI
Rnor_5.0	1	267,595,979 - 267,621,556 (+)	NCBI
RGSC_v3.4	1	246,057,957 - 246,082,661 (+)	RGD
Celera	1	235,563,511 - 235,588,215 (+)	RGD

Sequence:

show sequence

GGGTAATGGCCGCCATCTGGGACTCGCAGGCAATGGGGACCACGACAGATACCATCTCTTTTGC
TCACTGTACCTGACTGTGGCATTGTCCAAGCATTAAGTTGTGTGCCTTTGTTCCTGGGAGAAAG
TTGATACTAGCAGTTCCTCGTTCTTCCTGGCTTCTGGATTCAGTTGAAAATTCTGGATTCCTTT
TTTCTCATATGTCACCCTGAGCCTTCTGTCCTCTAAAGAGCTCCAATCTGACCTTCCATTCAAG
CCTTCCGTCTCTCCCAAGGGAAAAATCCAGTAGTCGCTAATGTCAGTTTATGCTTAATGGTGTT
TTATGCCTCTGGCACCCATGAGCAACCTGTAATCAGGTGCATTGATTTGAGGAAAATCCTGGTT
ATTTTGAAGATGTTGCAACTCAGTATTTTGTGTTTAAATCACAAATAACTTCACAAGTTTTCAG
AACAAAAGAGACTGGATTTTTTTTTTAATTAAATCATGCCATTTGAACAGACACAGCTATTTTG
TGATGAAAAACAAACTATTTTGAAAAAAATTGATACAAGAAATGAGATACCAGATACTATCAAA
TCAATACCTATACCAAAAATTTCAGAAGCTGGTTTTCATTATGAACCAAAAAATGTGAACATCT
GTTTACCCAAGATAAATATTCCAAATGAAATCTTAATGAAACATGAAGTTGAAAAATACAGAAA
ACTGTTTCAGAGTAAACCACAGACTGCAAGGAAATCTGTCAGTGTGAGGACTGTAAGCTGTGCC
AAGGGGTGTGCACAGCGCTGTGAATCTGAGCGCGCGGAAGACGAGGCTGGAAAGATGTGTGCAA
AGATACTCAACTTTACTTGTTCAAAGTGCCAAGACCGCACTCAGTATAGCCCGAATGACTTGCA
GAAACACTTTGAAATGTGGCATCATGGCGAGCTGCCTTCATTTCCTTGTGAAATGTGTAGTTTT
TCAGCAAGTGACTTCCAGATATTTAAACAACACCGAAAAACCCATAGGAATACTTTTGTAAAAT
GTGATATTTGTAACAGTGAGCGTTCATATACTTTATTGGACTTGACAAAGCATTTCACGTCTAA
ACATTGTGTTAATGGTAATTTTCAGTGTGAAGAGTGTAGATTCTTTACCCAGGATGTCGGCACA
TTTGTTCAGCACATTCATAGACATAAAGAAGTGCATTATAAATGTGGAAAATGCCATCACTTGT
GTTTTACCAAGGGAGAGCTTCAGAAGCACCTTCGTGTCCATTCTGGTACTCTGCCCTTCACTTG
TCACTACTGTAGCTATGGTGCCATTCATAAAGACCAACTTGTCAGACATGTTATAACCTTGCAT
AAAGAACACTTATATGCGAAAGAAAAACTGGAAAGAGACCAATATGATAAAAGAGTGGCAAAGA
CTACAACAGGACTTAAACTAATACTTAAAAGATACAAAATAGGTCCAACAAAGACGTTTTGGAA
ACGTAAGACAATTGCCAGTGGGAACGATGAAAGTATAGGAAAAAATGCTCAAGCATTTAATATA
GTGAGCAAAACACAGACTAAATCTGAAGACCAGAGTCAAGAGCAATTAAATGAGGAAAAGGGTG
GAAGACAGCACTGTGAGGATGGTGATAAGCCCATAGAATCGGGGTCAGAAAAGGCAACTGTGCT
ATCCACTGGGCAATGTAATAAAGCTGATGAGGGAGCAAGTGCTCCTTCAAGTGTCTTGAGCGCT
GTACAGGGACCGACGGTGTTACTGGTGAGAAATAATAAGATAACAATTCCTGCTAACTACAGTG
CTAAGTTTATGGGTTTCAAGATGGTAGATGGGAGACAGCATATCGTAATAAAATTGTTGCCTGC
CAATAAGCAGATTTTACCTTCACCAGCCTTACAGCCGAACACAGAAAAGGAGAGTACAGCTAAT
TTGCCACCCCAGGCCATGGACAACACTGGATTTGCAACTGGATTAACTGCAATGAATGACACAG
ATTTTGTGAAAGCAGCTCCACTTTCATGTTCATCCCCTGAGCTTCCCAGGAAAGTAATTTCTGA
AAAGGAAACAGCTTTCATATCCGAAAAAAATAATATGCTTCAGATGGTGGATGACAGTAAAAGT
GTAACTTCATTGCCAACACCGTCAGAATCAGTTACATCAGTGCGTTTGACTACAAAAGTTGAAG
CAAGAGATAATGTTGACTTGTGGGAAAATCCCAGCACCCAGAGTCATCCAGACTTAATAGGAAC
CTCCATTAACAGTCCTGATAAAGTCAACCTTACTATCAGGCCAAATGCATACAGTTGTGGAGAT
ATGCATAACTACTGCATTAATTATGTCAACTCTGAGTTACCTGCTGAATCCTCCAACTGTTTTG
AGTTCTCCAACCAAGGATCATTACCTTTTCATAATTACTCAAAGGTAAATAATAAACGCCGTAG
GTTTTCAAGAGGAGCAGTGTGTGAAAACCTTCAGAGGGAGTCTTCGAATAAAACAGTTACTCAA
CAATCAACTAGTGACAGTGACACAACTTCACCACTGAGAAAGGAGAGCTCCAACTCAGATAGCC
TGTTAGCATCCATCAGCCCTTTAAGTGGAACTTTAAAAATAAAAACGGAAATTGAAGAACCATG
TGATTTAGAAGAAACACAAAATTTTAATGAACAGAGCCTCTTTACTAATGAAAACCAAAATTTA
TTGAATATGACTGAAGAACCTAAGTGGGATGACATTCCCTGTGCCGGCTCCCCTATGATGCCGC
GAATCACATCTGTTTTCTCTCTCCAGAGTGAGCAGGCTTCAGAATTTTTGCCACCTGAAGTAAA
CCAGTTACTTCAAGATACATTAAAACCAAGATCTGATATAAAGGAAGATTCTAATAACATTCCC
AGTAAAAACCTTCCACTTGATTGTGACCAAACACTTAAAAAATCCAAGGAAGAAGTGATAAAAT
CTTCAAAAGACTTCCAAATGCAAGACATCATCTCAGTTCCTTCTGCCAGTGTAGGTGTTAATGT
GCCTGCAAATGATCTGAATTTAAAATGTAATGGACAGGAAAAACAAGCGCTGTCAGTATTACAA
GATGTGAGAGATCCAGGGGTGACCACTAAAATTCCAAGTATCATCACATTACTCAAGACTCAGT
CAGATGCAATAATAACACAACAGCTTGTAAAAGACAAACTCCGAACCACAACACAACATTCAGG
TCCTGTGTATGTTCAGAATCCACTTCTAACCTCAGAACAGAAGAATCCTGTATTTGTTCAAACT
CCAAAAGGTTTTATTATACCGTTGCATGTTGCTAACAAGCCTGGATTGCATGTTTTCTCCGGAA
GACCAGTTCCTTTGGTTAATACACAGAGTGTACCTGCTGCTCTCCTTGTAAACAAGAAACCTGG
AGTGGTTTTGACAGTTAACAATGGGAAACCTGAAGGTGTTCCCACTGTTAAGACTGAGAATGTT
CATAGTTACGGGACTGTGACTAAGGAACCTTGCAGAACACCTTTTCTGAAGGCAGAACACAACA
GGTACTGTCTTACACCTGGACTTTGTTCCAGTATTGGCAGTTGTGTGAACATGAAAACTTGCTC
AGAGAATACATTGCCACTGAAAGGTTCTTATATTATTAAAACATCAGTAAGTTCTTCAGTGAAA
GCGGTTCCTTTTGCTAACGTTCTACCTGAACAGCAGGGCCCTAACGTGAATGTCTTGGATGCGG
TAAAACAACAGAATGAAAGTTTACCCAAAGCATCTCTCTACACCCTCATGCCTGACGGTAAACA
AGCTGTATTTTTTAAGTGTATGATGCCAAATAACACTAAACTGCTTAAGCCTAGGTTAGTCCAA
AACAGCACCTACCAACGTATTCAGCCAAAGAGACCTGCAGGAGCACCACAGAAAATACTCTTAA
AGATTTTTAATCCTGTTTTAAGTATGAGTGCTGTTAATAATCTTTCAGTTGGCAACTCTGCATC
TTCATTCCAGAAAGAGATTGTACCCTCTAAACCAACTGTACATGGAGAACAGAAAGTGCCACAA
TCTTCTAGAGATGCCTTACCAGTCTCAGTGCAGGATTTGATGCCAGCAAATGAAGCTGTCCTTT
CTTCTACTGCAGCATGCCCAGGATCTTCTGAGGAACCAGTACATATCAGTGAGCGTTCAGAAAC
AAGAGTGTCAAGAAGTAAAGCAAATTGTACAATTGAGAGAAATTTCAATAAAAGAAAGACTTGT
AAAAATAAGTTTGCAAAAATTAAAACTCGTATAAGTCAAGATTCTGAAACTGCCTTTGTATCTA
GAAACAGAAGCTGTAAACGAAAGTACATTGATAATTACCAAGAACCTCCAAGGAAGAAGTCAGC
AACGCATAGAAAGTGTAAAGAAAGGGCTAATGCTGAAGATGTCCAGGAAACATTTGGATTTAGC
AGACCTAGGCTTCCAAAGGATTCTGGTAGAACTTTGAGACTTTTCCCTTTTAATTCCGAACAGC
TTGTAAAATGTCCTAGGAGAAACCAACCAGTTGTGGTTTTGAACCATCCTGATGCAGATGCCCC
AGAAGTAGAACGTGTAATGAAAACTATCACAAAGTTTAATGGGCGTGTATTGAAGGTTTCACTG
TCAAAAGCAACTATTAATGCTTTACTGAAACCAGTTTCTATCACTTCTGAAACAACTTACAGTG
ACTTTTCCAAGAGACACAAAATGCTTAAACCTGTTAATTCTGTGAAAGAAAGGTTTGTGCTAAA
ACTAACACTCAAAAAGACAAGCAAAAATAATTACCAGATTGTAAAAACTACCTCCGAAGATGTC
TTGAAATCTAAGTTTAACTGTTGGTTCTGTGGTAGAGTTTTTGACAATCAGGATGTGTGGGCTG
GCCATGGGCAGAGACATTTAGTGGAAGCTACTAAGGATTGGAATATGTTAGAATAACTTACTGT
GATTACCAAGGAAAGGATAGCTTAGAAGGAGAATGGGTTGGTATTGTAATTCAGGCTTTTTCTA
CATTGGTATAGTTTTGAACATTTCTAAGAGTCGATTATATTTCTGTGGAAGAACAAAGCTTTAT
ATGTGGTACTTGGAAATGCCACAGTTAACATATATTTTGAAAGAACGTAATTAGCACAGACCTT
GATTTAGTTGTATAAAGATGTATCTGTGGGACAGTAGGGGTAAGGAAATTTTTGACAAAAGAGT
TTTCTCAATTAAATTAGAGGGTAATGGTGGACAGCCCATTCCCTTTCTTCTCCCACCAGCCTTG
TAGAACTGACAAGAGTTTCTCTGGAGGTGGAGAACCTTCTCACAATGGTTTCCTACTACTTGTA
AAGAAGGACTGAGCTTAGATAAAGTTACTTTCTATCTATCATAGTTCATTTGAAAGGTATTAAG
TTTCTTTGAAAGCTACATCTTGCTGGACTGTAGTTAAACTTGAAATAATGCTTGAAGAGTTTGG
GGCAAGTAAATCCTGTTGCTGTGCCCTATATCAGATTGGAATGCCCTCTCAAGATGATTGTCTC
TTCCTGTGGCTGTCTTGATCACTGCAGTAAATGGGGCAATCTCCAGAGAAGAATCAAACTTTTT
CTAAAATCCACTTGAATGTCAACATTTTCCTGAATTTGGTCCTATTTCCCAGTGATCCCCTTGC
ACAGAACTATACTATCTGATTGGAAGTGTCCATAACCAAATGACTGTTTTACCTCCCTTGGTTG
GCATCCCTTCAAAATGAGCAGAAAGAACATAGAAGCATTTGAAAGGGAATGGCTTTTCTTCAAA
ACTAAAACTATTTTTACAGAGATAATATTTTGAAGCAAGGTTAACAAAGCAGATTATATTTTTG
CTTGTGTTTAATTACTGTTCTGGCCTAAACATGTCCACATTAGGCTAGACCATTTTCAGGATGA
CCAACAACCCAGAATAGTGTTAATAGTTGGTGTTTGAAAATAGAGAAGCAAGCATTAACAATGG
ACTCAGTAGCAGTTCATAAAACTTGAAAAATTCCTGAGAGACATGCCCAACAATTTCAAAGTGG
ATATTTTCATAACAATCCATTAATTTAACCTTACGATATACATTTGCATCATTTTTTTGTCTCA
TTGGATAATGAAGTTATATTAAAAGATGATATTCTATGTAATTTTTTGTTTTAATGTTACTATA
CATGTTAATGACATTTTCATTGATTGGATCAAAACTTCAGGGCTTTTTTTGTATATAACAAATG
TGTACATATTTTTGTACTTGATTATGTAAATTTGCACAAGAAGTTTATGACACAAAAAGTATTT
TCTTTTTAATTCTTTGCATGCATTAATAAAAATGGGTGATTTAAAAAGAAAAAGGACTGTACCC
ATGTTATTTTATTGGTTTTTATTTCTGACTTTTTTTTTTTTTTGGGTTGGGGACATACTTTTTT
TTTTTTCAGGGATTAAACACTATTGTTAGCAAGTGCCTAAAAATGATGTGAACCGTTTACACAT
GCCAACTGTAACAGTAGGTCCTAAACGGGCCCGTTCCCCTAATAGTTTTGATTTAAACAAAGCC
ATAAGTAGATGCTTCCAGCTATATTGCTATGCACATTATACTTGTACTGTTTCTGTGCAGTTTA
TCTACTTTCTTAGTGGAGTATTTTTTTGTATAAAACCTGTTATAATTGTGTTTCTTGAATTGAG
CCTGAGTGGAATTGATTGGAAATACACAGTATATATTAATAATGTACATGATGTTTAAAGAATG
GTAAGCATTGTTAATTTCCTTGTTCATTATTAATGAAGGTTTTCTTCAATTAAACTTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006231397 ⟹ XP_006231459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,668,815 - 249,694,401 (+)	NCBI
mRatBN7.2	1	239,720,677 - 239,744,978 (+)	NCBI
Rnor_6.0	1	260,153,982 - 260,178,360 (+)	NCBI
Rnor_5.0	1	267,595,979 - 267,621,556 (+)	NCBI

Sequence:

show sequence

TGTAAGAACTCCCCACGGTCTCAGAGGCTAGGACTTGGGCGAGCGCCGCGACAGTGTACTTCCG
CGCGTCGGAGGGGCAGCGGAACTCCGGGGAAAGGGGCGGATCGGGCGCGGCGTTTGGGGGCGAT
GCGGGGGCGTTTGGCGCGCGAAGCCATCACTCGTCGGGTTCCGCGGCTGGTGGAGACGGGATGG
GCAGCTCTCAGTCCGCACCCCCTCGAGCTATACCATCTCTTTTGCTCACTGTACCTGACTGTGG
CATTGTCCAAGCATTAAGTTGTGTGCCTTTGTTCCTGGGAGAAAGTTGATACTAGCAGTTCCTC
GTTCTTCCTGGCTTCTGGACTCAGTTGAAAATTCTGGATTCCTTTTTTCTCATATGTCACCCTG
AGCCTTCTGTCCTCTAAAGAGCTCCAATCTGACCTTCCATTCAAGCCTTCCGTCTCTCCCAAGG
GAAAAATCCAGTAGTCGCTAATGTCAGTTTATGCTTAATGGTGTTTTATGCCTCTGGCACCCAT
GAGCAACCTGTAATCAGGTGCATTGATTTGAGGAAAATCCTGGTTATTTTGAAGATGTTGCAAC
TCAGTATTTTGTGTTTAAATCACAAATAACTTCACAAGTTTTCAGAACAAAAGAGACTGGATTT
TTTTTTTTAATTAAATCATGCCATTTGAACAGACACAGCTATTTTGTGATGAAAAACAAACTAT
TTTGAAAAAAATTGATACAAGAAATGAGATACCAGATACTATCAAATCAATACCTATACCAAAA
ATTTCAGAAGCTGGTTTTCATTATGAACCAAAAAATGTGAACATCTGTTTACCCAAGATAAATA
TTCCAAATGAAATCTTAATGAAACATGAAGTTGAAAAATACAGAAAACTGTTTCAGAGTAAACC
ACAGACTGCAAGGAAATCTGTCAGTGTGAGGACTGTAAGCTGTGCCAAGGGGTGTGCACAGCGC
TGTGAATCTGAGCGCGCGGAAGACGAGGCTGGAAAGATGTGTGCAAAGATACTCAACTTTACTT
GTTCAAAGTGCCAAGACCGCACTCAGTATAGCCCGAATGACTTGCAGAAACACTTTGAAATGTG
GCATCATGGCGAGCTGCCTTCATTTCCTTGTGAAATGTGTAGTTTTTCAGCAAGTGACTTCCAG
ATATTTAAACAACACCGAAAAACCCATAGGAATACTTTTGTAAAATGTGATATTTGTAACAGTG
AGCGTTCATATACTTTATTGGACTTGACAAAGCATTTCACGTCTAAACATTGTGTTAATGGTAA
TTTTCAGTGTGAAGAGTGTAGATTCTTTACCCAGGATGTCGGCACATTTGTTCAGCACATTCAT
AGACATAAAGAAGTGCATTATAAATGTGGAAAATGCCATCACTTGTGTTTTACCAAGGGAGAGC
TTCAGAAGCACCTTCGTGTCCATTCTGGTACTCTGCCCTTCACTTGTCACTACTGTAGCTATGG
TGCCATTCATAAAGACCAACTTGTCAGACATGTTATAACCTTGCATAAAGAACACTTATATGCG
AAAGAAAAACTGGAAAGAGACCAATATGATAAAAGAGTGGCAAAGACTACAACAGGACTTAAAC
TAATACTTAAAAGATACAAAATAGGTCCAACAAAGACGTTTTGGAAACGTAAGACAATTGCCAG
TGGGAACGATGAAAGTATAGGAAAAAATGCTCAAGCATTTAATATAGTGAGCAAAACACAGACT
AAATCTGAAGACCAGAGTCAAGAGCAATTAAATGAGGAAAAGGGTGGAAGACAGCACTGTGAGG
ACGGTGATAAGCCCATAGAATCGGGGTCAGAAAAGGCAACTGTGCTATCCACTGGGCAATGTAA
TAAAGCTGATGAGGGAGCAAGTGCTCCTTCAAGTGTCTTGAGCGCTGTACAGGGACCGACGGTG
TTACTGGTGAGAAATAATAAGATAACAATTCCTGCTAACTACAGTGCTAAGTTTATGGGCTTCA
AGATGGTAGATGGGAGACAGCATATCGTAATAAAATTGTTGCCTGCCAATAAGCAGATTTTACC
TTCACCAGCCTTACAGCCGAACACAGAAAAGGAGAGTACAGCTAATTTGCCACCCCAGGCCATG
GACAACACTGGATTTGCAACTGGATTAACTGCAATGAATGACACAGATTTTGTGAAAGCAGCTC
CACTTTCATGTTCATCCCCTGAGCTTCCCAGGAAAGTAATTTCTGAAAAGGAAACAGCTTTCAT
ATCCGAAAAAAATAATATGCTTCAGATGGTGGATGACAGTAAAAGTGTAACTTCATTGCCAACA
CCGTCAGAATCAGTTACATCAGTGCGTTTGACTACAAAAGTTGAAGCAAGAGATAATGTTGACT
TGTGGGAAAATCCCAGCACCCAGAGTCATCCAGACTTAATAGGAACCTCCATTAACAGTCCTGA
TAAAGTCAACCTTACTATCAGGCCAAATGCATACAGTTGTGGAGATATGCATAACTACTGCATT
AATTATGTCAACTCTGAGTTACCTGCTGAATCCTCCAACTGTTTTGAGTTCTCCAACCAAGGAT
CATTACCTTTTCATAATTACTCAAAGGTAAATAATAAACGCCGTAGGTTTTCAAGAGGAGCAGT
GTGTGAAAACCTTCAGAGGGAGTCTTCGAATAAAACAGTTACTCAACAATCAACTAGTGACAGT
GACACAACTTCACCACTGAGAAAGGAGAGCTCCAACTCAGATAGCCTGTTAGCATCCATCAGCC
CTTTAAGTGGAACTTTAAAAATAAAAACGGAAATTGAAGAACCATGTGATTTAGAAGAAACACA
AAATTTTAATGAACAGAGCCTCTTTACTAATGAAAACCAAAATTTATTGAATATGACTGAAGAA
CCTAAGTGGGATGACATTCCCTGTGCCGGCTCCCCTATGATGCCGCGAATCACATCTGTTTTCT
CTCTCCAGAGTGAGCAGGCTTCAGAATTTTTGCCACCTGAAGTAAACCAGTTACTTCAAGATAC
ATTAAAACCAAGATCTGATATAAAGGAAGATTCTAATAACATTCCCAGTAAAAACCTTCCACTT
GATTGTGACCAAACACTTAAAAAATCCAAGGAAGAAGTGATAAAATCTTCAAAAGACTTCCAAA
TGCAAGACATCATCTCAGTTCCTTCTGCCAGTGTAGGTGTTAATGTGCCTGCAAATGATCTGAA
TTTAAAATGTAATGGACAGGAAAAACAAGCGCTGTCAGTATTACAAGATGTGAGAGATCCAGGG
GTGACCACTAAAATTCCAAGTATCATCACATTACTCAAGACTCAGTCAGATGCAATAATAACAC
AACAGCTTGTAAAAGACAAACTCCGAACCACAACACAACATTCAGGTCCTGTGTATGTTCAGAA
TCCACTTCTAACCTCAGAACAGAAGAATCCTGTATTTGTTCAAACTCCAAAAGGTTTTATTATA
CCGTTGCATGTTGCTAACAAGCCTGGATTGCATGTTTTCTCCGGAAGACCAGTTCCTTTGGTTA
ATACACAGAGTGTACCTGCTGCTCTCCTTGTAAACAAGAAACCTGGAGTGGTTTTGACAGTTAA
CAATGGGAAACCTGAAGGTGTTCCCACTGTTAAGACTGAGAATGTTCATAGTTACGGGACTGTG
ACTAAGGAACCTTGCAGAACACCTTTTCTGAAGGCAGAACACAACAGGTACTGTCTTACACCTG
GACTTTGTTCCAGTATTGGCAGTTGTGTGAACATGAAAACTTGCTCAGAGAATACATTGCCACT
GAAAGGTTCTTATATTATTAAAACATCAGTAAGTTCTTCAGTGAAAGCGGTTCCTTTTGCTAAC
GTTCTACCTGAACAGCAGGGCCCTAACGTGAATGTCTTGGATGCGGTAAAACAACAGAATGAAA
GTTTACCCAAAGCATCTCTCTACACCCTCATGCCTGACGGTAAACAAGCTGTATTTTTTAAGTG
TATGATGCCAAATAACACTAAACTGCTTAAGCCTAGGTTAGTCCAAAACAGCACCTACCAACGT
ATTCAGCCAAAGAGACCTGCAGGAGCACCACAGAAAATACTCTTAAAGATTTTTAATCCTGTTT
TAAGTATGAGTGCTGTTAATAATCTTTCAGTTGGCAACTCTGCATCTTCATTCCAGAAAGAGAT
TGTACCCTCTAAACCAACTGTACATGGAGAACAGAAAGTGCCACAATCTTCTAGAGATGCCTTA
CCAGTCTCAGTGCAGGATTTGATGCCAGCAAATGAAGCTGTCCTTTCTTCTACTGCAGCATGCC
CAGGATCTTCTGAGGAACCAGTACATATCAGTGAGCGTTCAGAAACAAGAGTGTCAAGAAGTAA
AGCAAATTGTACAATTGAGAGAAATTTCAATAAAAGAAAGACTTGTAAAAATAAGTTTGCAAAA
ATTAAAACTCGTATAAGTCAAGATTCTGAAACTGCCTTTGTATCTAGAAACAGAAGCTGTAAAC
GAAAGTACATTGATAATTACCAAGAACCTCCAAGGAAGAAGTCAGCAACGCATAGAAAGTGTAA
AGAAAGGGCTAATGCTGAAGATGTCCAGGAAACATTTGGATTTAGCAGACCTAGGCTTCCAAAG
GATTCTGGTAGAACTTTGAGACTTTTCCCTTTTAATTCCGAACAGCTTGTAAAATGTCCTAGGA
GAAACCAACCAGTTGTGGTTTTGAACCATCCTGATGCAGATGCCCCAGAAGTAGAACGTGTAAT
GAAAACTATCACAAAGTTTAATGGGCGTGTATTGAAGGTTTCACTGTCAAAAGCAACTATTAAT
GCTTTACTGAAACCAGTTTCTATCACTTCTGAAACAACTTACAGTGACTTTTCCAAGAGACACA
AAATGCTTAAACCTGTTAATTCTGTGAAAGAAAGGTTTGTGCTAAAACTAACACTCAAAAAGAC
AAGCAAAAATAATTACCAGATTGTAAAAACTACCTCCGAAGATGTCTTGAAATCTAAGTTTAAC
TGTTGGTTCTGTGGTAGAGTTTTTGACAATCAGGATGTGTGGGCTGGCCATGGGCAGAGACATT
TAGTGGAAGCTACTAAGGATTGGAATATGTTAGAATAACTTACTGTGATTACCAAGGAAAGGAT
AGCTTAGAAGAAGAATGGGTTGGTATTGTAATTCAGGCTTTTTCTACATTGGTATAGTTTTGAA
CATTTCTAAGAGTCGATTATATTTCTGTGGAAGAACAAAGCTTTATATGTGGTACTTGGAAATG
CCACAATTAACATATATTTTGAAAGAACGTAATTAGCACAGACCTTGATTTAGTTGTATAAAGA
TGCATCTGTGGGACAGTAGGGGTAAGGAAATTTTTGACAAAAGAGTTTTCTCAATTAAATTAGA
GGGTAATGGTGGACAGCCCATTCCCTTTCTTCTCCCACCAGCCTTGTAGAACTGACAAGAGTTT
CTCTGGAGGTGGAGAACCTTCTCACAATGGTTTCCTACTACTTGTAAAGAAGGACTGAGCTTAG
ATAAAGTTACTTTCTATCTATCATAGTTCATTTGAAAGGTATTAAGTTTCTTTGAAAGCTACAT
CTTGCTGGACTGTAGTTAAACTTGAAATAATGCTTGAAGAGTTTGGGGCAAGTAAATCCTGTTG
CTGTGCCCTATATCAGATTGGAATGCCCTCTCAAGATGATTGTCTCTTCCTGTGGCTGTCTTGA
TCACTGCAGTAAATGGGGCAATCTCCAGAGAAGAATCAAACTTTTTCTAAAATCCACTTGAATG
TCAACATTTTCCTGAATTTGGTCCTATTTCCCAGTGATCCCCTTGCACAGAACTATACTATCTG
ATTGGAAGTGTCCATAACCAAATGACTTTTTTACCTCCCTTGGTTGGCATCCCTTCAAAATGAG
CAGAAAGAACATAGAAGCATTTGAAAGGGAATGGCTTTTCTTCAAAACTAAAACTATTTTTACA
GAGATAATATTTTGAAGCAAGGTTAACAAAGCAGATTATATTTTTGCTTGTGTTTAATTACTGT
TCTGGCCTAAACATGTCCACATTAGGCTAGACCATTTTCAGGACGACCAACAACCCAGAATAGT
GTTAATAGTTGGTGTTTGAAAATAGAGAAGCAAGCATTAACAATGGACTCAGTAGCAGTTCATA
AAACTTGAAAAATTCCTGAGAGACATGCCCAACAATTTCAAAGTGGATATTTTCATAACAATCC
ATTAATTTAACCTTACGATATACATTTGCATCATTTTTTGTCTCATTGGATAATGAAGTTATAT
TAAAAGATGATATTCTATGTAATTTTTTGTTTTAATGTTACTATACATGTTAATGACATTTTCA
TTGATTGGATCAAAACTTCAGGGCTTTTTTTGTATATAACAAATGTGTACATATTTTTGTACTT
GATTATGTAAATTTGCACAAGAAGTTTATGACACAAAAAGTATTTTCTTTTTAATTCTTTGCAT
GCATTAATAAAAATGGGTGATTTAAAAAGAAAAAGGACTGTACCCATGTTATTTTATTGGTTTT
TATTTCTGACTTTTTTTTTTTTTTTTTTGGTTGGGGACATACTTTTTTTTTTTTTCAGGGATTA
AACACTATTGTTAGCAAGTGCCTAAAAATGATGTGAACCGTTTACACATGCCAACTGTAACAGT
AGGTCCTAAACGGGCCCATTCCCCTAATAGTTTTGATTTAAACAAAGCCATAAGTAGATGCTTC
CAGCTATATTGCTATGCACATTATACTTGTACTGTTTCTGTGCAGTTTATCTACTTTCTTAGTG
GAGTATTTTTTTGTATAAAACCTGTTATAATTGTGTTTCTTGAATTGAGCCTGAGTGGAATTGA
TTGGAAATACACAGTATATATTAATAATGTACATGATGTTTAAAGAATGGTAAGCATTGTTAAT
TTCCTTGTTCATTATTAATGAAGGTTTTCTTCAATTAAACTTAAGCTTGTGTTTA

hide sequence

RefSeq Acc Id:

XM_006231398 ⟹ XP_006231460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,669,770 - 249,694,401 (+)	NCBI
mRatBN7.2	1	239,720,321 - 239,744,978 (+)	NCBI
Rnor_6.0	1	260,153,705 - 260,178,360 (+)	NCBI
Rnor_5.0	1	267,595,979 - 267,621,556 (+)	NCBI

Sequence:

show sequence

CGCGGAGCCGCCAAGACCAGTTAGGATGTCGGGGCGCACACAGAGAGGCAGCAAGGGACCAAGG
GCGAATTCGTGGGGTGCCAGGTTTTCCTCGAAGTGGTCTAGGGATCCGCCTCTTGTGATAGGAA
GCTCATGTTAAATAGTCCCGTCCATTCAGCGCTTCCGGCCAACTTGCCGCAAAGTTTTCTAGAG
AAGTCATTGGTTTTTAACCAGGGGCTCTTGCCAGCTATTAGGGTTGGTCATTGTCGTCTCGGCT
TGGGCTTGTTATACCATCTCTTTTGCTCACTGTACCTGACTGTGGCATTGTCCAAGCATTAAGT
TGTGTGCCTTTGTTCCTGGGAGAAAGTTGATACTAGCAGTTCCTCGTTCTTCCTGGCTTCTGGA
CTCAGTTGAAAATTCTGGATTCCTTTTTTCTCATATGTCACCCTGAGCCTTCTGTCCTCTAAAG
AGCTCCAATCTGACCTTCCATTCAAGCCTTCCGTCTCTCCCAAGGGAAAAATCCAGTAGTCGCT
AATGTCAGTTTATGCTTAATGGTGTTTTATGCCTCTGGCACCCATGAGCAACCTGTAATCAGGT
GCATTGATTTGAGGAAAATCCTGGTTATTTTGAAGATGTTGCAACTCAGTATTTTGTGTTTAAA
TCACAAATAACTTCACAAGTTTTCAGAACAAAAGAGACTGGATTTTTTTTTTTAATTAAATCAT
GCCATTTGAACAGACACAGCTATTTTGTGATGAAAAACAAACTATTTTGAAAAAAATTGATACA
AGAAATGAGATACCAGATACTATCAAATCAATACCTATACCAAAAATTTCAGAAGCTGGTTTTC
ATTATGAACCAAAAAATGTGAACATCTGTTTACCCAAGATAAATATTCCAAATGAAATCTTAAT
GAAACATGAAGTTGAAAAATACAGAAAACTGTTTCAGAGTAAACCACAGACTGCAAGGAAATCT
GTCAGTGTGAGGACTGTAAGCTGTGCCAAGGGGTGTGCACAGCGCTGTGAATCTGAGCGCGCGG
AAGACGAGGCTGGAAAGATGTGTGCAAAGATACTCAACTTTACTTGTTCAAAGTGCCAAGACCG
CACTCAGTATAGCCCGAATGACTTGCAGAAACACTTTGAAATGTGGCATCATGGCGAGCTGCCT
TCATTTCCTTGTGAAATGTGTAGTTTTTCAGCAAGTGACTTCCAGATATTTAAACAACACCGAA
AAACCCATAGGAATACTTTTGTAAAATGTGATATTTGTAACAGTGAGCGTTCATATACTTTATT
GGACTTGACAAAGCATTTCACGTCTAAACATTGTGTTAATGGTAATTTTCAGTGTGAAGAGTGT
AGATTCTTTACCCAGGATGTCGGCACATTTGTTCAGCACATTCATAGACATAAAGAAGTGCATT
ATAAATGTGGAAAATGCCATCACTTGTGTTTTACCAAGGGAGAGCTTCAGAAGCACCTTCGTGT
CCATTCTGGTACTCTGCCCTTCACTTGTCACTACTGTAGCTATGGTGCCATTCATAAAGACCAA
CTTGTCAGACATGTTATAACCTTGCATAAAGAACACTTATATGCGAAAGAAAAACTGGAAAGAG
ACCAATATGATAAAAGAGTGGCAAAGACTACAACAGGACTTAAACTAATACTTAAAAGATACAA
AATAGGTCCAACAAAGACGTTTTGGAAACGTAAGACAATTGCCAGTGGGAACGATGAAAGTATA
GGAAAAAATGCTCAAGCATTTAATATAGTGAGCAAAACACAGACTAAATCTGAAGACCAGAGTC
AAGAGCAATTAAATGAGGAAAAGGGTGGAAGACAGCACTGTGAGGACGGTGATAAGCCCATAGA
ATCGGGGTCAGAAAAGGCAACTGTGCTATCCACTGGGCAATGTAATAAAGCTGATGAGGGAGCA
AGTGCTCCTTCAAGTGTCTTGAGCGCTGTACAGGGACCGACGGTGTTACTGGTGAGAAATAATA
AGATAACAATTCCTGCTAACTACAGTGCTAAGTTTATGGGCTTCAAGATGGTAGATGGGAGACA
GCATATCGTAATAAAATTGTTGCCTGCCAATAAGCAGATTTTACCTTCACCAGCCTTACAGCCG
AACACAGAAAAGGAGAGTACAGCTAATTTGCCACCCCAGGCCATGGACAACACTGGATTTGCAA
CTGGATTAACTGCAATGAATGACACAGATTTTGTGAAAGCAGCTCCACTTTCATGTTCATCCCC
TGAGCTTCCCAGGAAAGTAATTTCTGAAAAGGAAACAGCTTTCATATCCGAAAAAAATAATATG
CTTCAGATGGTGGATGACAGTAAAAGTGTAACTTCATTGCCAACACCGTCAGAATCAGTTACAT
CAGTGCGTTTGACTACAAAAGTTGAAGCAAGAGATAATGTTGACTTGTGGGAAAATCCCAGCAC
CCAGAGTCATCCAGACTTAATAGGAACCTCCATTAACAGTCCTGATAAAGTCAACCTTACTATC
AGGCCAAATGCATACAGTTGTGGAGATATGCATAACTACTGCATTAATTATGTCAACTCTGAGT
TACCTGCTGAATCCTCCAACTGTTTTGAGTTCTCCAACCAAGGATCATTACCTTTTCATAATTA
CTCAAAGGTAAATAATAAACGCCGTAGGTTTTCAAGAGGAGCAGTGTGTGAAAACCTTCAGAGG
GAGTCTTCGAATAAAACAGTTACTCAACAATCAACTAGTGACAGTGACACAACTTCACCACTGA
GAAAGGAGAGCTCCAACTCAGATAGCCTGTTAGCATCCATCAGCCCTTTAAGTGGAACTTTAAA
AATAAAAACGGAAATTGAAGAACCATGTGATTTAGAAGAAACACAAAATTTTAATGAACAGAGC
CTCTTTACTAATGAAAACCAAAATTTATTGAATATGACTGAAGAACCTAAGTGGGATGACATTC
CCTGTGCCGGCTCCCCTATGATGCCGCGAATCACATCTGTTTTCTCTCTCCAGAGTGAGCAGGC
TTCAGAATTTTTGCCACCTGAAGTAAACCAGTTACTTCAAGATACATTAAAACCAAGATCTGAT
ATAAAGGAAGATTCTAATAACATTCCCAGTAAAAACCTTCCACTTGATTGTGACCAAACACTTA
AAAAATCCAAGGAAGAAGTGATAAAATCTTCAAAAGACTTCCAAATGCAAGACATCATCTCAGT
TCCTTCTGCCAGTGTAGGTGTTAATGTGCCTGCAAATGATCTGAATTTAAAATGTAATGGACAG
GAAAAACAAGCGCTGTCAGTATTACAAGATGTGAGAGATCCAGGGGTGACCACTAAAATTCCAA
GTATCATCACATTACTCAAGACTCAGTCAGATGCAATAATAACACAACAGCTTGTAAAAGACAA
ACTCCGAACCACAACACAACATTCAGGTCCTGTGTATGTTCAGAATCCACTTCTAACCTCAGAA
CAGAAGAATCCTGTATTTGTTCAAACTCCAAAAGGTTTTATTATACCGTTGCATGTTGCTAACA
AGCCTGGATTGCATGTTTTCTCCGGAAGACCAGTTCCTTTGGTTAATACACAGAGTGTACCTGC
TGCTCTCCTTGTAAACAAGAAACCTGGAGTGGTTTTGACAGTTAACAATGGGAAACCTGAAGGT
GTTCCCACTGTTAAGACTGAGAATGTTCATAGTTACGGGACTGTGACTAAGGAACCTTGCAGAA
CACCTTTTCTGAAGGCAGAACACAACAGGTACTGTCTTACACCTGGACTTTGTTCCAGTATTGG
CAGTTGTGTGAACATGAAAACTTGCTCAGAGAATACATTGCCACTGAAAGGTTCTTATATTATT
AAAACATCAGTAAGTTCTTCAGTGAAAGCGGTTCCTTTTGCTAACGTTCTACCTGAACAGCAGG
GCCCTAACGTGAATGTCTTGGATGCGGTAAAACAACAGAATGAAAGTTTACCCAAAGCATCTCT
CTACACCCTCATGCCTGACGGTAAACAAGCTGTATTTTTTAAGTGTATGATGCCAAATAACACT
AAACTGCTTAAGCCTAGGTTAGTCCAAAACAGCACCTACCAACGTATTCAGCCAAAGAGACCTG
CAGGAGCACCACAGAAAATACTCTTAAAGATTTTTAATCCTGTTTTAAGTATGAGTGCTGTTAA
TAATCTTTCAGTTGGCAACTCTGCATCTTCATTCCAGAAAGAGATTGTACCCTCTAAACCAACT
GTACATGGAGAACAGAAAGTGCCACAATCTTCTAGAGATGCCTTACCAGTCTCAGTGCAGGATT
TGATGCCAGCAAATGAAGCTGTCCTTTCTTCTACTGCAGCATGCCCAGGATCTTCTGAGGAACC
AGTACATATCAGTGAGCGTTCAGAAACAAGAGTGTCAAGAAGTAAAGCAAATTGTACAATTGAG
AGAAATTTCAATAAAAGAAAGACTTGTAAAAATAAGTTTGCAAAAATTAAAACTCGTATAAGTC
AAGATTCTGAAACTGCCTTTGTATCTAGAAACAGAAGCTGTAAACGAAAGTACATTGATAATTA
CCAAGAACCTCCAAGGAAGAAGTCAGCAACGCATAGAAAGTGTAAAGAAAGGGCTAATGCTGAA
GATGTCCAGGAAACATTTGGATTTAGCAGACCTAGGCTTCCAAAGGATTCTGGTAGAACTTTGA
GACTTTTCCCTTTTAATTCCGAACAGCTTGTAAAATGTCCTAGGAGAAACCAACCAGTTGTGGT
TTTGAACCATCCTGATGCAGATGCCCCAGAAGTAGAACGTGTAATGAAAACTATCACAAAGTTT
AATGGGCGTGTATTGAAGGTTTCACTGTCAAAAGCAACTATTAATGCTTTACTGAAACCAGTTT
CTATCACTTCTGAAACAACTTACAGTGACTTTTCCAAGAGACACAAAATGCTTAAACCTGTTAA
TTCTGTGAAAGAAAGGTTTGTGCTAAAACTAACACTCAAAAAGACAAGCAAAAATAATTACCAG
ATTGTAAAAACTACCTCCGAAGATGTCTTGAAATCTAAGTTTAACTGTTGGTTCTGTGGTAGAG
TTTTTGACAATCAGGATGTGTGGGCTGGCCATGGGCAGAGACATTTAGTGGAAGCTACTAAGGA
TTGGAATATGTTAGAATAACTTACTGTGATTACCAAGGAAAGGATAGCTTAGAAGAAGAATGGG
TTGGTATTGTAATTCAGGCTTTTTCTACATTGGTATAGTTTTGAACATTTCTAAGAGTCGATTA
TATTTCTGTGGAAGAACAAAGCTTTATATGTGGTACTTGGAAATGCCACAATTAACATATATTT
TGAAAGAACGTAATTAGCACAGACCTTGATTTAGTTGTATAAAGATGCATCTGTGGGACAGTAG
GGGTAAGGAAATTTTTGACAAAAGAGTTTTCTCAATTAAATTAGAGGGTAATGGTGGACAGCCC
ATTCCCTTTCTTCTCCCACCAGCCTTGTAGAACTGACAAGAGTTTCTCTGGAGGTGGAGAACCT
TCTCACAATGGTTTCCTACTACTTGTAAAGAAGGACTGAGCTTAGATAAAGTTACTTTCTATCT
ATCATAGTTCATTTGAAAGGTATTAAGTTTCTTTGAAAGCTACATCTTGCTGGACTGTAGTTAA
ACTTGAAATAATGCTTGAAGAGTTTGGGGCAAGTAAATCCTGTTGCTGTGCCCTATATCAGATT
GGAATGCCCTCTCAAGATGATTGTCTCTTCCTGTGGCTGTCTTGATCACTGCAGTAAATGGGGC
AATCTCCAGAGAAGAATCAAACTTTTTCTAAAATCCACTTGAATGTCAACATTTTCCTGAATTT
GGTCCTATTTCCCAGTGATCCCCTTGCACAGAACTATACTATCTGATTGGAAGTGTCCATAACC
AAATGACTTTTTTACCTCCCTTGGTTGGCATCCCTTCAAAATGAGCAGAAAGAACATAGAAGCA
TTTGAAAGGGAATGGCTTTTCTTCAAAACTAAAACTATTTTTACAGAGATAATATTTTGAAGCA
AGGTTAACAAAGCAGATTATATTTTTGCTTGTGTTTAATTACTGTTCTGGCCTAAACATGTCCA
CATTAGGCTAGACCATTTTCAGGACGACCAACAACCCAGAATAGTGTTAATAGTTGGTGTTTGA
AAATAGAGAAGCAAGCATTAACAATGGACTCAGTAGCAGTTCATAAAACTTGAAAAATTCCTGA
GAGACATGCCCAACAATTTCAAAGTGGATATTTTCATAACAATCCATTAATTTAACCTTACGAT
ATACATTTGCATCATTTTTTGTCTCATTGGATAATGAAGTTATATTAAAAGATGATATTCTATG
TAATTTTTTGTTTTAATGTTACTATACATGTTAATGACATTTTCATTGATTGGATCAAAACTTC
AGGGCTTTTTTTGTATATAACAAATGTGTACATATTTTTGTACTTGATTATGTAAATTTGCACA
AGAAGTTTATGACACAAAAAGTATTTTCTTTTTAATTCTTTGCATGCATTAATAAAAATGGGTG
ATTTAAAAAGAAAAAGGACTGTACCCATGTTATTTTATTGGTTTTTATTTCTGACTTTTTTTTT
TTTTTTTTTGGTTGGGGACATACTTTTTTTTTTTTTCAGGGATTAAACACTATTGTTAGCAAGT
GCCTAAAAATGATGTGAACCGTTTACACATGCCAACTGTAACAGTAGGTCCTAAACGGGCCCAT
TCCCCTAATAGTTTTGATTTAAACAAAGCCATAAGTAGATGCTTCCAGCTATATTGCTATGCAC
ATTATACTTGTACTGTTTCTGTGCAGTTTATCTACTTTCTTAGTGGAGTATTTTTTTGTATAAA
ACCTGTTATAATTGTGTTTCTTGAATTGAGCCTGAGTGGAATTGATTGGAAATACACAGTATAT
ATTAATAATGTACATGATGTTTAAAGAATGGTAAGCATTGTTAATTTCCTTGTTCATTATTAAT
GAAGGTTTTCTTCAATTAAACTTAAGCTTGTGTTTA

hide sequence

RefSeq Acc Id:

XM_008760440 ⟹ XP_008758662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,668,821 - 249,694,401 (+)	NCBI
mRatBN7.2	1	239,719,305 - 239,744,978 (+)	NCBI
Rnor_6.0	1	260,152,881 - 260,178,360 (+)	NCBI

Sequence:

show sequence

AGGAAGGTAATTATTTACCAAGTGAGATTAGTAGGCTTCTGAAACGTTCTGAAAGAGAGGGGCC
ACATTTGAACTTTGTACGACTCTTGTGTGTTGTTGGGGGAGGATTCTTTTCTTGGGGGCAAGGA
TTCCATTTTTGAGACTGTGATGTGTGTGCAAGGGTTTTCTTCGCGGGGAGGGCTTCCTTCGCTC
AGATGAGACCTCCAGGCCTTGGGAGGAGGTCGTCCTGTGTTGGGAGAAGACCGTCCCTCACAGA
GTAGCCTGTGAGGCTGCTTTCGAACTCAGGGTTGGCTCCCTTGTGGACCAGAGCTTTGGATGGC
TGCTTCGTTCAACAGCTAGGACTTCAAGGGATACCAGAACTTGCGTGATCCGAATACCATCTCT
TTTGCTCACTGTACCTGACTGTGGCATTGTCCAAGCATTAAGTTGTGTGCCTTTGTTCCTGGGA
GAAAGTTGATACTAGCAGTTCCTCGTTCTTCCTGGCTTCTGGACTCAGTTGAAAATTCTGGATT
CCTTTTTTCTCATATGTCACCCTGAGCCTTCTGTCCTCTAAAGAGCTCCAATCTGACCTTCCAT
TCAAGCCTTCCGTCTCTCCCAAGGGAAAAATCCAGTAGTCGCTAATGTCAGTTTATGCTTAATG
GTGTTTTATGCCTCTGGCACCCATGAGCAACCTGTAATCAGGTGCATTGATTTGAGGAAAATCC
TGGTTATTTTGAAGATGTTGCAACTCAGTATTTTGTGTTTAAATCACAAATAACTTCACAAGTT
TTCAGAACAAAAGAGACTGGATTTTTTTTTTTAATTAAATCATGCCATTTGAACAGACACAGCT
ATTTTGTGATGAAAAACAAACTATTTTGAAAAAAATTGATACAAGAAATGAGATACCAGATACT
ATCAAATCAATACCTATACCAAAAATTTCAGAAGCTGGTTTTCATTATGAACCAAAAAATGTGA
ACATCTGTTTACCCAAGATAAATATTCCAAATGAAATCTTAATGAAACATGAAGTTGAAAAATA
CAGAAAACTGTTTCAGAGTAAACCACAGACTGCAAGGAAATCTGTCAGTGTGAGGACTGTAAGC
TGTGCCAAGGGGTGTGCACAGCGCTGTGAATCTGAGCGCGCGGAAGACGAGGCTGGAAAGATGT
GTGCAAAGATACTCAACTTTACTTGTTCAAAGTGCCAAGACCGCACTCAGTATAGCCCGAATGA
CTTGCAGAAACACTTTGAAATGTGGCATCATGGCGAGCTGCCTTCATTTCCTTGTGAAATGTGT
AGTTTTTCAGCAAGTGACTTCCAGATATTTAAACAACACCGAAAAACCCATAGGAATACTTTTG
TAAAATGTGATATTTGTAACAGTGAGCGTTCATATACTTTATTGGACTTGACAAAGCATTTCAC
GTCTAAACATTGTGTTAATGGTAATTTTCAGTGTGAAGAGTGTAGATTCTTTACCCAGGATGTC
GGCACATTTGTTCAGCACATTCATAGACATAAAGAAGTGCATTATAAATGTGGAAAATGCCATC
ACTTGTGTTTTACCAAGGGAGAGCTTCAGAAGCACCTTCGTGTCCATTCTGGTACTCTGCCCTT
CACTTGTCACTACTGTAGCTATGGTGCCATTCATAAAGACCAACTTGTCAGACATGTTATAACC
TTGCATAAAGAACACTTATATGCGAAAGAAAAACTGGAAAGAGACCAATATGATAAAAGAGTGG
CAAAGACTACAACAGGACTTAAACTAATACTTAAAAGATACAAAATAGGTCCAACAAAGACGTT
TTGGAAACGTAAGACAATTGCCAGTGGGAACGATGAAAGTATAGGAAAAAATGCTCAAGCATTT
AATATAGTGAGCAAAACACAGACTAAATCTGAAGACCAGAGTCAAGAGCAATTAAATGAGGAAA
AGGGTGGAAGACAGCACTGTGAGGACGGTGATAAGCCCATAGAATCGGGGTCAGAAAAGGCAAC
TGTGCTATCCACTGGGCAATGTAATAAAGCTGATGAGGGAGCAAGTGCTCCTTCAAGTGTCTTG
AGCGCTGTACAGGGACCGACGGTGTTACTGGTGAGAAATAATAAGATAACAATTCCTGCTAACT
ACAGTGCTAAGTTTATGGGCTTCAAGATGGTAGATGGGAGACAGCATATCGTAATAAAATTGTT
GCCTGCCAATAAGCAGATTTTACCTTCACCAGCCTTACAGCCGAACACAGAAAAGGAGAGTACA
GCTAATTTGCCACCCCAGGCCATGGACAACACTGGATTTGCAACTGGATTAACTGCAATGAATG
ACACAGATTTTGTGAAAGCAGCTCCACTTTCATGTTCATCCCCTGAGCTTCCCAGGAAAGTAAT
TTCTGAAAAGGAAACAGCTTTCATATCCGAAAAAAATAATATGCTTCAGATGGTGGATGACAGT
AAAAGTGTAACTTCATTGCCAACACCGTCAGAATCAGTTACATCAGTGCGTTTGACTACAAAAG
TTGAAGCAAGAGATAATGTTGACTTGTGGGAAAATCCCAGCACCCAGAGTCATCCAGACTTAAT
AGGAACCTCCATTAACAGTCCTGATAAAGTCAACCTTACTATCAGGCCAAATGCATACAGTTGT
GGAGATATGCATAACTACTGCATTAATTATGTCAACTCTGAGTTACCTGCTGAATCCTCCAACT
GTTTTGAGTTCTCCAACCAAGGATCATTACCTTTTCATAATTACTCAAAGGTAAATAATAAACG
CCGTAGGTTTTCAAGAGGAGCAGTGTGTGAAAACCTTCAGAGGGAGTCTTCGAATAAAACAGTT
ACTCAACAATCAACTAGTGACAGTGACACAACTTCACCACTGAGAAAGGAGAGCTCCAACTCAG
ATAGCCTGTTAGCATCCATCAGCCCTTTAAGTGGAACTTTAAAAATAAAAACGGAAATTGAAGA
ACCATGTGATTTAGAAGAAACACAAAATTTTAATGAACAGAGCCTCTTTACTAATGAAAACCAA
AATTTATTGAATATGACTGAAGAACCTAAGTGGGATGACATTCCCTGTGCCGGCTCCCCTATGA
TGCCGCGAATCACATCTGTTTTCTCTCTCCAGAGTGAGCAGGCTTCAGAATTTTTGCCACCTGA
AGTAAACCAGTTACTTCAAGATACATTAAAACCAAGATCTGATATAAAGGAAGATTCTAATAAC
ATTCCCAGTAAAAACCTTCCACTTGATTGTGACCAAACACTTAAAAAATCCAAGGAAGAAGTGA
TAAAATCTTCAAAAGACTTCCAAATGCAAGACATCATCTCAGTTCCTTCTGCCAGTGTAGGTGT
TAATGTGCCTGCAAATGATCTGAATTTAAAATGTAATGGACAGGAAAAACAAGCGCTGTCAGTA
TTACAAGATGTGAGAGATCCAGGGGTGACCACTAAAATTCCAAGTATCATCACATTACTCAAGA
CTCAGTCAGATGCAATAATAACACAACAGCTTGTAAAAGACAAACTCCGAACCACAACACAACA
TTCAGGTCCTGTGTATGTTCAGAATCCACTTCTAACCTCAGAACAGAAGAATCCTGTATTTGTT
CAAACTCCAAAAGGTTTTATTATACCGTTGCATGTTGCTAACAAGCCTGGATTGCATGTTTTCT
CCGGAAGACCAGTTCCTTTGGTTAATACACAGAGTGTACCTGCTGCTCTCCTTGTAAACAAGAA
ACCTGGAGTGGTTTTGACAGTTAACAATGGGAAACCTGAAGGTGTTCCCACTGTTAAGACTGAG
AATGTTCATAGTTACGGGACTGTGACTAAGGAACCTTGCAGAACACCTTTTCTGAAGGCAGAAC
ACAACAGGTACTGTCTTACACCTGGACTTTGTTCCAGTATTGGCAGTTGTGTGAACATGAAAAC
TTGCTCAGAGAATACATTGCCACTGAAAGGTTCTTATATTATTAAAACATCAGTAAGTTCTTCA
GTGAAAGCGGTTCCTTTTGCTAACGTTCTACCTGAACAGCAGGGCCCTAACGTGAATGTCTTGG
ATGCGGTAAAACAACAGAATGAAAGTTTACCCAAAGCATCTCTCTACACCCTCATGCCTGACGG
TAAACAAGCTGTATTTTTTAAGTGTATGATGCCAAATAACACTAAACTGCTTAAGCCTAGGTTA
GTCCAAAACAGCACCTACCAACGTATTCAGCCAAAGAGACCTGCAGGAGCACCACAGAAAATAC
TCTTAAAGATTTTTAATCCTGTTTTAAGTATGAGTGCTGTTAATAATCTTTCAGTTGGCAACTC
TGCATCTTCATTCCAGAAAGAGATTGTACCCTCTAAACCAACTGTACATGGAGAACAGAAAGTG
CCACAATCTTCTAGAGATGCCTTACCAGTCTCAGTGCAGGATTTGATGCCAGCAAATGAAGCTG
TCCTTTCTTCTACTGCAGCATGCCCAGGATCTTCTGAGGAACCAGTACATATCAGTGAGCGTTC
AGAAACAAGAGTGTCAAGAAGTAAAGCAAATTGTACAATTGAGAGAAATTTCAATAAAAGAAAG
ACTTGTAAAAATAAGTTTGCAAAAATTAAAACTCGTATAAGTCAAGATTCTGAAACTGCCTTTG
TATCTAGAAACAGAAGCTGTAAACGAAAGTACATTGATAATTACCAAGAACCTCCAAGGAAGAA
GTCAGCAACGCATAGAAAGTGTAAAGAAAGGGCTAATGCTGAAGATGTCCAGGAAACATTTGGA
TTTAGCAGACCTAGGCTTCCAAAGGATTCTGGTAGAACTTTGAGACTTTTCCCTTTTAATTCCG
AACAGCTTGTAAAATGTCCTAGGAGAAACCAACCAGTTGTGGTTTTGAACCATCCTGATGCAGA
TGCCCCAGAAGTAGAACGTGTAATGAAAACTATCACAAAGTTTAATGGGCGTGTATTGAAGGTT
TCACTGTCAAAAGCAACTATTAATGCTTTACTGAAACCAGTTTCTATCACTTCTGAAACAACTT
ACAGTGACTTTTCCAAGAGACACAAAATGCTTAAACCTGTTAATTCTGTGAAAGAAAGGTTTGT
GCTAAAACTAACACTCAAAAAGACAAGCAAAAATAATTACCAGATTGTAAAAACTACCTCCGAA
GATGTCTTGAAATCTAAGTTTAACTGTTGGTTCTGTGGTAGAGTTTTTGACAATCAGGATGTGT
GGGCTGGCCATGGGCAGAGACATTTAGTGGAAGCTACTAAGGATTGGAATATGTTAGAATAACT
TACTGTGATTACCAAGGAAAGGATAGCTTAGAAGAAGAATGGGTTGGTATTGTAATTCAGGCTT
TTTCTACATTGGTATAGTTTTGAACATTTCTAAGAGTCGATTATATTTCTGTGGAAGAACAAAG
CTTTATATGTGGTACTTGGAAATGCCACAATTAACATATATTTTGAAAGAACGTAATTAGCACA
GACCTTGATTTAGTTGTATAAAGATGCATCTGTGGGACAGTAGGGGTAAGGAAATTTTTGACAA
AAGAGTTTTCTCAATTAAATTAGAGGGTAATGGTGGACAGCCCATTCCCTTTCTTCTCCCACCA
GCCTTGTAGAACTGACAAGAGTTTCTCTGGAGGTGGAGAACCTTCTCACAATGGTTTCCTACTA
CTTGTAAAGAAGGACTGAGCTTAGATAAAGTTACTTTCTATCTATCATAGTTCATTTGAAAGGT
ATTAAGTTTCTTTGAAAGCTACATCTTGCTGGACTGTAGTTAAACTTGAAATAATGCTTGAAGA
GTTTGGGGCAAGTAAATCCTGTTGCTGTGCCCTATATCAGATTGGAATGCCCTCTCAAGATGAT
TGTCTCTTCCTGTGGCTGTCTTGATCACTGCAGTAAATGGGGCAATCTCCAGAGAAGAATCAAA
CTTTTTCTAAAATCCACTTGAATGTCAACATTTTCCTGAATTTGGTCCTATTTCCCAGTGATCC
CCTTGCACAGAACTATACTATCTGATTGGAAGTGTCCATAACCAAATGACTTTTTTACCTCCCT
TGGTTGGCATCCCTTCAAAATGAGCAGAAAGAACATAGAAGCATTTGAAAGGGAATGGCTTTTC
TTCAAAACTAAAACTATTTTTACAGAGATAATATTTTGAAGCAAGGTTAACAAAGCAGATTATA
TTTTTGCTTGTGTTTAATTACTGTTCTGGCCTAAACATGTCCACATTAGGCTAGACCATTTTCA
GGACGACCAACAACCCAGAATAGTGTTAATAGTTGGTGTTTGAAAATAGAGAAGCAAGCATTAA
CAATGGACTCAGTAGCAGTTCATAAAACTTGAAAAATTCCTGAGAGACATGCCCAACAATTTCA
AAGTGGATATTTTCATAACAATCCATTAATTTAACCTTACGATATACATTTGCATCATTTTTTG
TCTCATTGGATAATGAAGTTATATTAAAAGATGATATTCTATGTAATTTTTTGTTTTAATGTTA
CTATACATGTTAATGACATTTTCATTGATTGGATCAAAACTTCAGGGCTTTTTTTGTATATAAC
AAATGTGTACATATTTTTGTACTTGATTATGTAAATTTGCACAAGAAGTTTATGACACAAAAAG
TATTTTCTTTTTAATTCTTTGCATGCATTAATAAAAATGGGTGATTTAAAAAGAAAAAGGACTG
TACCCATGTTATTTTATTGGTTTTTATTTCTGACTTTTTTTTTTTTTTTTTTGGTTGGGGACAT
ACTTTTTTTTTTTTTCAGGGATTAAACACTATTGTTAGCAAGTGCCTAAAAATGATGTGAACCG
TTTACACATGCCAACTGTAACAGTAGGTCCTAAACGGGCCCATTCCCCTAATAGTTTTGATTTA
AACAAAGCCATAAGTAGATGCTTCCAGCTATATTGCTATGCACATTATACTTGTACTGTTTCTG
TGCAGTTTATCTACTTTCTTAGTGGAGTATTTTTTTGTATAAAACCTGTTATAATTGTGTTTCT
TGAATTGAGCCTGAGTGGAATTGATTGGAAATACACAGTATATATTAATAATGTACATGATGTT
TAAAGAATGGTAAGCATTGTTAATTTCCTTGTTCATTATTAATGAAGGTTTTCTTCAATTAAAC
TTAAGCTTGTGTTTA

hide sequence

RefSeq Acc Id:

XM_039080611 ⟹ XP_038936539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,668,815 - 249,694,401 (+)	NCBI
mRatBN7.2	1	239,720,061 - 239,744,978 (+)	NCBI

RefSeq Acc Id:

XM_039080620 ⟹ XP_038936548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	249,669,770 - 249,694,401 (+)	NCBI
mRatBN7.2	1	239,720,321 - 239,744,978 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001025209	(Get FASTA)	NCBI Sequence Viewer
	XP_006231459	(Get FASTA)	NCBI Sequence Viewer
	XP_006231460	(Get FASTA)	NCBI Sequence Viewer
	XP_008758662	(Get FASTA)	NCBI Sequence Viewer
	XP_038936539	(Get FASTA)	NCBI Sequence Viewer
	XP_038936548	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99801	(Get FASTA)	NCBI Sequence Viewer
	EDL94190	(Get FASTA)	NCBI Sequence Viewer
	EDL94191	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051600.2
	ENSRNOP00000080397
	ENSRNOP00000080397.1
	ENSRNOP00000092189
	ENSRNOP00000092189.1
	ENSRNOP00000095709.1
	ENSRNOP00000096129.1
	ENSRNOP00000103958
	ENSRNOP00000106655
GenBank Protein	Q499R0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001025209 ⟸ NM_001030038

- UniProtKB:

Q499R0 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPFEQTQLFCDEKQTILKKIDTRNEIPDTIKSIPIPKISEAGFHYEPKNVNICLPKINIPNEIL
MKHEVEKYRKLFQSKPQTARKSVSVRTVSCAKGCAQRCESERAEDEAGKMCAKILNFTCSKCQD
RTQYSPNDLQKHFEMWHHGELPSFPCEMCSFSASDFQIFKQHRKTHRNTFVKCDICNSERSYTL
LDLTKHFTSKHCVNGNFQCEECRFFTQDVGTFVQHIHRHKEVHYKCGKCHHLCFTKGELQKHLR
VHSGTLPFTCHYCSYGAIHKDQLVRHVITLHKEHLYAKEKLERDQYDKRVAKTTTGLKLILKRY
KIGPTKTFWKRKTIASGNDESIGKNAQAFNIVSKTQTKSEDQSQEQLNEEKGGRQHCEDGDKPI
ESGSEKATVLSTGQCNKADEGASAPSSVLSAVQGPTVLLVRNNKITIPANYSAKFMGFKMVDGR
QHIVIKLLPANKQILPSPALQPNTEKESTANLPPQAMDNTGFATGLTAMNDTDFVKAAPLSCSS
PELPRKVISEKETAFISEKNNMLQMVDDSKSVTSLPTPSESVTSVRLTTKVEARDNVDLWENPS
TQSHPDLIGTSINSPDKVNLTIRPNAYSCGDMHNYCINYVNSELPAESSNCFEFSNQGSLPFHN
YSKVNNKRRRFSRGAVCENLQRESSNKTVTQQSTSDSDTTSPLRKESSNSDSLLASISPLSGTL
KIKTEIEEPCDLEETQNFNEQSLFTNENQNLLNMTEEPKWDDIPCAGSPMMPRITSVFSLQSEQ
ASEFLPPEVNQLLQDTLKPRSDIKEDSNNIPSKNLPLDCDQTLKKSKEEVIKSSKDFQMQDIIS
VPSASVGVNVPANDLNLKCNGQEKQALSVLQDVRDPGVTTKIPSIITLLKTQSDAIITQQLVKD
KLRTTTQHSGPVYVQNPLLTSEQKNPVFVQTPKGFIIPLHVANKPGLHVFSGRPVPLVNTQSVP
AALLVNKKPGVVLTVNNGKPEGVPTVKTENVHSYGTVTKEPCRTPFLKAEHNRYCLTPGLCSSI
GSCVNMKTCSENTLPLKGSYIIKTSVSSSVKAVPFANVLPEQQGPNVNVLDAVKQQNESLPKAS
LYTLMPDGKQAVFFKCMMPNNTKLLKPRLVQNSTYQRIQPKRPAGAPQKILLKIFNPVLSMSAV
NNLSVGNSASSFQKEIVPSKPTVHGEQKVPQSSRDALPVSVQDLMPANEAVLSSTAACPGSSEE
PVHISERSETRVSRSKANCTIERNFNKRKTCKNKFAKIKTRISQDSETAFVSRNRSCKRKYIDN
YQEPPRKKSATHRKCKERANAEDVQETFGFSRPRLPKDSGRTLRLFPFNSEQLVKCPRRNQPVV
VLNHPDADAPEVERVMKTITKFNGRVLKVSLSKATINALLKPVSITSETTYSDFSKRHKMLKPV
NSVKERFVLKLTLKKTSKNNYQIVKTTSEDVLKSKFNCWFCGRVFDNQDVWAGHGQRHLVEATK
DWNMLE

hide sequence

RefSeq Acc Id:	XP_006231459 ⟸ XM_006231397
- Peptide Label:	isoform X1
- UniProtKB:	Q499R0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPFEQTQLFCDEKQTILKKIDTRNEIPDTIKSIPIPKISEAGFHYEPKNVNICLPKINIPNEIL MKHEVEKYRKLFQSKPQTARKSVSVRTVSCAKGCAQRCESERAEDEAGKMCAKILNFTCSKCQD RTQYSPNDLQKHFEMWHHGELPSFPCEMCSFSASDFQIFKQHRKTHRNTFVKCDICNSERSYTL LDLTKHFTSKHCVNGNFQCEECRFFTQDVGTFVQHIHRHKEVHYKCGKCHHLCFTKGELQKHLR VHSGTLPFTCHYCSYGAIHKDQLVRHVITLHKEHLYAKEKLERDQYDKRVAKTTTGLKLILKRY KIGPTKTFWKRKTIASGNDESIGKNAQAFNIVSKTQTKSEDQSQEQLNEEKGGRQHCEDGDKPI ESGSEKATVLSTGQCNKADEGASAPSSVLSAVQGPTVLLVRNNKITIPANYSAKFMGFKMVDGR QHIVIKLLPANKQILPSPALQPNTEKESTANLPPQAMDNTGFATGLTAMNDTDFVKAAPLSCSS PELPRKVISEKETAFISEKNNMLQMVDDSKSVTSLPTPSESVTSVRLTTKVEARDNVDLWENPS TQSHPDLIGTSINSPDKVNLTIRPNAYSCGDMHNYCINYVNSELPAESSNCFEFSNQGSLPFHN YSKVNNKRRRFSRGAVCENLQRESSNKTVTQQSTSDSDTTSPLRKESSNSDSLLASISPLSGTL KIKTEIEEPCDLEETQNFNEQSLFTNENQNLLNMTEEPKWDDIPCAGSPMMPRITSVFSLQSEQ ASEFLPPEVNQLLQDTLKPRSDIKEDSNNIPSKNLPLDCDQTLKKSKEEVIKSSKDFQMQDIIS VPSASVGVNVPANDLNLKCNGQEKQALSVLQDVRDPGVTTKIPSIITLLKTQSDAIITQQLVKD KLRTTTQHSGPVYVQNPLLTSEQKNPVFVQTPKGFIIPLHVANKPGLHVFSGRPVPLVNTQSVP AALLVNKKPGVVLTVNNGKPEGVPTVKTENVHSYGTVTKEPCRTPFLKAEHNRYCLTPGLCSSI GSCVNMKTCSENTLPLKGSYIIKTSVSSSVKAVPFANVLPEQQGPNVNVLDAVKQQNESLPKAS LYTLMPDGKQAVFFKCMMPNNTKLLKPRLVQNSTYQRIQPKRPAGAPQKILLKIFNPVLSMSAV NNLSVGNSASSFQKEIVPSKPTVHGEQKVPQSSRDALPVSVQDLMPANEAVLSSTAACPGSSEE PVHISERSETRVSRSKANCTIERNFNKRKTCKNKFAKIKTRISQDSETAFVSRNRSCKRKYIDN YQEPPRKKSATHRKCKERANAEDVQETFGFSRPRLPKDSGRTLRLFPFNSEQLVKCPRRNQPVV VLNHPDADAPEVERVMKTITKFNGRVLKVSLSKATINALLKPVSITSETTYSDFSKRHKMLKPV NSVKERFVLKLTLKKTSKNNYQIVKTTSEDVLKSKFNCWFCGRVFDNQDVWAGHGQRHLVEATK DWNMLE hide sequence

RefSeq Acc Id:	XP_006231460 ⟸ XM_006231398
- Peptide Label:	isoform X1
- UniProtKB:	Q499R0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPFEQTQLFCDEKQTILKKIDTRNEIPDTIKSIPIPKISEAGFHYEPKNVNICLPKINIPNEIL MKHEVEKYRKLFQSKPQTARKSVSVRTVSCAKGCAQRCESERAEDEAGKMCAKILNFTCSKCQD RTQYSPNDLQKHFEMWHHGELPSFPCEMCSFSASDFQIFKQHRKTHRNTFVKCDICNSERSYTL LDLTKHFTSKHCVNGNFQCEECRFFTQDVGTFVQHIHRHKEVHYKCGKCHHLCFTKGELQKHLR VHSGTLPFTCHYCSYGAIHKDQLVRHVITLHKEHLYAKEKLERDQYDKRVAKTTTGLKLILKRY KIGPTKTFWKRKTIASGNDESIGKNAQAFNIVSKTQTKSEDQSQEQLNEEKGGRQHCEDGDKPI ESGSEKATVLSTGQCNKADEGASAPSSVLSAVQGPTVLLVRNNKITIPANYSAKFMGFKMVDGR QHIVIKLLPANKQILPSPALQPNTEKESTANLPPQAMDNTGFATGLTAMNDTDFVKAAPLSCSS PELPRKVISEKETAFISEKNNMLQMVDDSKSVTSLPTPSESVTSVRLTTKVEARDNVDLWENPS TQSHPDLIGTSINSPDKVNLTIRPNAYSCGDMHNYCINYVNSELPAESSNCFEFSNQGSLPFHN YSKVNNKRRRFSRGAVCENLQRESSNKTVTQQSTSDSDTTSPLRKESSNSDSLLASISPLSGTL KIKTEIEEPCDLEETQNFNEQSLFTNENQNLLNMTEEPKWDDIPCAGSPMMPRITSVFSLQSEQ ASEFLPPEVNQLLQDTLKPRSDIKEDSNNIPSKNLPLDCDQTLKKSKEEVIKSSKDFQMQDIIS VPSASVGVNVPANDLNLKCNGQEKQALSVLQDVRDPGVTTKIPSIITLLKTQSDAIITQQLVKD KLRTTTQHSGPVYVQNPLLTSEQKNPVFVQTPKGFIIPLHVANKPGLHVFSGRPVPLVNTQSVP AALLVNKKPGVVLTVNNGKPEGVPTVKTENVHSYGTVTKEPCRTPFLKAEHNRYCLTPGLCSSI GSCVNMKTCSENTLPLKGSYIIKTSVSSSVKAVPFANVLPEQQGPNVNVLDAVKQQNESLPKAS LYTLMPDGKQAVFFKCMMPNNTKLLKPRLVQNSTYQRIQPKRPAGAPQKILLKIFNPVLSMSAV NNLSVGNSASSFQKEIVPSKPTVHGEQKVPQSSRDALPVSVQDLMPANEAVLSSTAACPGSSEE PVHISERSETRVSRSKANCTIERNFNKRKTCKNKFAKIKTRISQDSETAFVSRNRSCKRKYIDN YQEPPRKKSATHRKCKERANAEDVQETFGFSRPRLPKDSGRTLRLFPFNSEQLVKCPRRNQPVV VLNHPDADAPEVERVMKTITKFNGRVLKVSLSKATINALLKPVSITSETTYSDFSKRHKMLKPV NSVKERFVLKLTLKKTSKNNYQIVKTTSEDVLKSKFNCWFCGRVFDNQDVWAGHGQRHLVEATK DWNMLE hide sequence

RefSeq Acc Id:	XP_008758662 ⟸ XM_008760440
- Peptide Label:	isoform X1
- UniProtKB:	Q499R0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPFEQTQLFCDEKQTILKKIDTRNEIPDTIKSIPIPKISEAGFHYEPKNVNICLPKINIPNEIL MKHEVEKYRKLFQSKPQTARKSVSVRTVSCAKGCAQRCESERAEDEAGKMCAKILNFTCSKCQD RTQYSPNDLQKHFEMWHHGELPSFPCEMCSFSASDFQIFKQHRKTHRNTFVKCDICNSERSYTL LDLTKHFTSKHCVNGNFQCEECRFFTQDVGTFVQHIHRHKEVHYKCGKCHHLCFTKGELQKHLR VHSGTLPFTCHYCSYGAIHKDQLVRHVITLHKEHLYAKEKLERDQYDKRVAKTTTGLKLILKRY KIGPTKTFWKRKTIASGNDESIGKNAQAFNIVSKTQTKSEDQSQEQLNEEKGGRQHCEDGDKPI ESGSEKATVLSTGQCNKADEGASAPSSVLSAVQGPTVLLVRNNKITIPANYSAKFMGFKMVDGR QHIVIKLLPANKQILPSPALQPNTEKESTANLPPQAMDNTGFATGLTAMNDTDFVKAAPLSCSS PELPRKVISEKETAFISEKNNMLQMVDDSKSVTSLPTPSESVTSVRLTTKVEARDNVDLWENPS TQSHPDLIGTSINSPDKVNLTIRPNAYSCGDMHNYCINYVNSELPAESSNCFEFSNQGSLPFHN YSKVNNKRRRFSRGAVCENLQRESSNKTVTQQSTSDSDTTSPLRKESSNSDSLLASISPLSGTL KIKTEIEEPCDLEETQNFNEQSLFTNENQNLLNMTEEPKWDDIPCAGSPMMPRITSVFSLQSEQ ASEFLPPEVNQLLQDTLKPRSDIKEDSNNIPSKNLPLDCDQTLKKSKEEVIKSSKDFQMQDIIS VPSASVGVNVPANDLNLKCNGQEKQALSVLQDVRDPGVTTKIPSIITLLKTQSDAIITQQLVKD KLRTTTQHSGPVYVQNPLLTSEQKNPVFVQTPKGFIIPLHVANKPGLHVFSGRPVPLVNTQSVP AALLVNKKPGVVLTVNNGKPEGVPTVKTENVHSYGTVTKEPCRTPFLKAEHNRYCLTPGLCSSI GSCVNMKTCSENTLPLKGSYIIKTSVSSSVKAVPFANVLPEQQGPNVNVLDAVKQQNESLPKAS LYTLMPDGKQAVFFKCMMPNNTKLLKPRLVQNSTYQRIQPKRPAGAPQKILLKIFNPVLSMSAV NNLSVGNSASSFQKEIVPSKPTVHGEQKVPQSSRDALPVSVQDLMPANEAVLSSTAACPGSSEE PVHISERSETRVSRSKANCTIERNFNKRKTCKNKFAKIKTRISQDSETAFVSRNRSCKRKYIDN YQEPPRKKSATHRKCKERANAEDVQETFGFSRPRLPKDSGRTLRLFPFNSEQLVKCPRRNQPVV VLNHPDADAPEVERVMKTITKFNGRVLKVSLSKATINALLKPVSITSETTYSDFSKRHKMLKPV NSVKERFVLKLTLKKTSKNNYQIVKTTSEDVLKSKFNCWFCGRVFDNQDVWAGHGQRHLVEATK DWNMLE hide sequence

Ensembl Acc Id:

ENSRNOP00000051600 ⟸ ENSRNOT00000054717

RefSeq Acc Id:	XP_038936539 ⟸ XM_039080611
- Peptide Label:	isoform X1
- UniProtKB:	Q499R0 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038936548 ⟸ XM_039080620
- Peptide Label:	isoform X1
- UniProtKB:	Q499R0 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000092189 ⟸ ENSRNOT00000097947

Ensembl Acc Id:

ENSRNOP00000095709 ⟸ ENSRNOT00000105629

Ensembl Acc Id:

ENSRNOP00000080397 ⟸ ENSRNOT00000111652

Ensembl Acc Id:

ENSRNOP00000096129 ⟸ ENSRNOT00000098938

Ensembl Acc Id:

ENSRNOP00000106652 ⟸ ENSRNOT00000154743

Ensembl Acc Id:

ENSRNOP00000106655 ⟸ ENSRNOT00000139822

Ensembl Acc Id:

ENSRNOP00000103958 ⟸ ENSRNOT00000126549

Ensembl Acc Id:

ENSRNOP00000102056 ⟸ ENSRNOT00000159284

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q499R0-F1-model_v2	AlphaFold	Q499R0	1-1478	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690901

Promoter ID:

EPDNEW_R1425

Type:

initiation region

Name:

Zfp518a_1

Description:

zinc finger protein 518A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	260,153,591 - 260,153,651	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305314	AgrOrtholog
BioCyc Gene	G2FUF-55697	BioCyc
Ensembl Genes	ENSRNOG00000036592	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000054717.4	UniProtKB/Swiss-Prot
	ENSRNOT00000097947	ENTREZGENE
	ENSRNOT00000097947.1	UniProtKB/Swiss-Prot
	ENSRNOT00000098938.1	UniProtKB/Swiss-Prot
	ENSRNOT00000105629.1	UniProtKB/Swiss-Prot
	ENSRNOT00000111652	ENTREZGENE
	ENSRNOT00000111652.1	UniProtKB/Swiss-Prot
	ENSRNOT00000126549	ENTREZGENE
	ENSRNOT00000139822	ENTREZGENE
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7936437	IMAGE-MGC_LOAD
InterPro	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
KEGG Report	rno:309478	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124846	IMAGE-MGC_LOAD
NCBI Gene	309478	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/Swiss-Prot
	ZINC FINGER PROTEIN 518A	UniProtKB/Swiss-Prot
PhenoGen	Zfp518a	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000036592	RatGTEx
SMART	ZnF_C2H2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot
UniProt	Q499R0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-19	Zfp518a	zinc finger protein 518A	Znf518a	zinc finger protein 518A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1305314	similar to KIAA0335	RGD1305314_predicted	similar to KIAA0335 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1305314_predicted	similar to KIAA0335 (predicted)	LOC309478_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC309478_predicted	similar to KIAA0335 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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